RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 GPR18Q14330 331 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 PCSK7Q16549 785 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 INSCQ1MX18 579 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 CRTC2Q53ET0 693 aaPredicted RBP15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 ALKBH5Q6P6C2 394 aaKnown RBP15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 C6orf15Q6UXA7 325 aaPredicted RBP15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 TMC3Q7Z5M5 1100 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 SPATA22Q8NHS9 363 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 TADA1Q96BN2 335 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 GBP4Q96PP9 640 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 TRIM55Q9BYV6 548 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 TRIT1Q9H3H1 467 aaKnown RBP15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 UCK1Q9HA47 277 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 TRIM39Q9HCM9 518 aa15.21■□□□□ 0.03
CLSTN3-213ENST00000541953 A0A1W2PQJ5 194 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 RGSL1A5PLK6 1076 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 C3orf70A6NLC5 250 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 OR5K4A6NMS3 321 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 PDZK1P1A8MUH7 402 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 KATNA1O75449 491 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 NDUFA10O95299 355 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 MT-CYBP00156 380 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 VIPP01282 170 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 GP1BBP13224 206 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 SLC2A4P14672 509 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 ZNF7P17097 686 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 CA4P22748 312 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 MAN1A1P33908 653 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 NOP2P46087 812 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 DCDC1P59894 354 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 RPS18P62269 152 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 KCNAB1Q14722 419 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 NFKBIBQ15653 356 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 HADHQ16836 314 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 TRAM1L1Q8N609 369 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 CCHCR1Q8TD31 782 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 CT55Q8WUE5 264 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 IMP4Q96G21 291 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 AGAP3Q96P47 875 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 RNF157Q96PX1 679 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 PSMG3-AS1Q96PY0 264 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 EFHD1Q9BUP0 239 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 NAT10Q9H0A0 1025 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 EPB41L1Q9H4G0 881 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 BPIFA1Q9NP55 256 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 SLC40A1Q9NP59 571 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 NFKBIL1Q9UBC1 381 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 LNPEPQ9UIQ6 1025 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 HEY1Q9Y5J3 304 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 PCSK5Q92824 1860 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 UNC79Q9P2D8 2635 aa15.2■□□□□ 0.02
CLSTN3-213ENST00000541953 IGHV5-51A0A0C4DH38 117 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 BLACEA4D250 179 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 CDC14CA4D256 554 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 SMTNL1A8MU46 457 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 SPAG6O75602 509 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 RASSF9O75901 435 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 MTA2O94776 668 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 SERPINC1P01008 464 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 GYPCP04921 128 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 KRT7P08729 469 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 FGF5P12034 268 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 AMD1P17707 334 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 KDELR1P24390 212 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 CD97P48960 835 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 FANCCQ00597 558 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 KLRB1Q12918 225 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 PDK2Q15119 407 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 ATP13A5Q4VNC0 1218 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 CPZQ66K79 652 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 IRGCQ6NXR0 463 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 FAM83HQ6ZRV2 1179 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 PRSS42Q7Z5A4 293 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 LRRTM4Q86VH4 590 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 RASGRP3Q8IV61 690 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 TRIM48Q8IWZ4 208 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 NAT14Q8WUY8 206 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 SYN2Q92777 582 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 STAMBPL1Q96FJ0 436 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 OLFM3Q96PB7 478 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 TIMM29Q9BSF4 260 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 ZSCAN5AQ9BUG6 496 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 CTTNBP2NLQ9P2B4 639 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 TLK1Q9UKI8 766 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 KCTD3Q9Y597 815 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 ICE1Q9Y2F5 2266 aa15.19■□□□□ 0.02
CLSTN3-213ENST00000541953 MED13Q9UHV7 2174 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 SPTBN1Q01082 2364 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 GOLGA6L3A6NEY3 463 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 KMOO15229 486 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 MBD3O95983 291 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 RNF224P0DH78 156 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 FOLR1P15328 257 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 MX2P20592 715 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 CTSCP53634 463 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 MC1RQ01726 317 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 AP1B1Q10567 949 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 CHAF1BQ13112 559 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 DNASE1L3Q13609 305 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 LAMB3Q13751 1172 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms