RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 GANCQ8TET4 914 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 DNAJA4Q8WW22 397 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SLC5A11Q8WWX8 675 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 NELL1Q92832 810 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 YIPF6Q96EC8 236 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TRMT61AQ96FX7 289 aaKnown RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 PPP1R36Q96LQ0 422 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 NT5C1BQ96P26 610 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 MOGAT1Q96PD6 335 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TSGA13Q96PP4 275 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TMEM39BQ9GZU3 492 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TMEM117Q9H0C3 514 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 UNC93B1Q9H1C4 597 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF385DQ9H6B1 395 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CHRAC1Q9NRG0 131 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 KCNH7Q9NS40 1196 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SRRDQ9UH36 339 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 PGAP2Q9UHJ9 254 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 ELF5Q9UKW6 265 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 KLHL20Q9Y2M5 609 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 DERAQ9Y315 318 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SIPA1L1O43166 1804 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 PMS2P1A4D2B8 440 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 H0YAE9 185 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 STMND1H3BQB6 276 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 RGS20O76081 388 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 SNX4O95219 450 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 C1QBP02746 253 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 FTH1P02794 183 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 FASP25445 335 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 POU1F1P28069 291 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 CSKP41240 450 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 RPS5P46782 204 aaKnown RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 FMO1Q01740 532 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 KCNC3Q14003 757 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF169Q14929 603 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 PTPRRQ15256 657 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 ZMAT1Q5H9K5 638 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 TREML2Q5T2D2 321 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 LDLRAD1Q5T700 205 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 N4BP2L1Q5TBK1 243 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 TMEM198Q66K66 360 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 LRRC8EQ6NSJ5 796 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 CASC4Q6P4E1 433 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 BEND4Q6ZU67 534 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 RETREG3Q86VR2 466 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 DHFR2Q86XF0 187 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 APOBEC3FQ8IUX4 373 aaKnown RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 SLC44A5Q8NCS7 719 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 AGR3Q8TD06 166 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 OR2A14Q96R47 310 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 SDHCQ99643 169 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 GAL3ST1Q99999 423 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF577Q9BSK1 485 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 REPIN1Q9BWE0 567 aaKnown RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 MS4A7Q9GZW8 240 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 TNKS2Q9H2K2 1166 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 SMOC2Q9H3U7 446 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 PDZD7Q9H5P4 517 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 ESRP2Q9H6T0 727 aaKnown RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 SNX5Q9Y5X3 404 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 COL2A1P02458 1487 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 A0A0U1RQS6 177 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 SLC37A4O43826 429 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 KRT1P04264 644 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 FGRP09769 529 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 GDI2P50395 445 aaKnown RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 DAB2P98082 770 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 IKZF1Q13422 519 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 CCINQ13939 588 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 AMHR2Q16671 573 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 ZIK1Q3SY52 487 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 C16orf86Q6ZW13 317 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 KRT25Q7Z3Z0 450 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 FAM35AQ86V20 835 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 CDAN1Q8IWY9 1227 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 CNTD1Q8N815 330 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 GJA10Q969M2 543 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 LGALS12Q96DT0 336 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 NPAS1Q99742 590 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 SLC19A3Q9BZV2 496 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 SHARPINQ9H0F6 387 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 RACGAP1Q9H0H5 632 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 DEFB129Q9H1M3 183 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 UCK1Q9HA47 277 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 ZBTB26Q9HCK0 441 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 UBE2TQ9NPD8 197 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-214ENST00000540539 PPP1R14DQ9NXH3 145 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 BFARQ9NZS9 450 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 PDE10AQ9Y233 779 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 CSADQ9Y600 493 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 CDY1Q9Y6F8 540 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 U3KQV3 271 aa9.38□□□□□ -0.91
CLIP1-214ENST00000540539 A0A0B4J293 547 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 PITPNM1O00562 1244 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 PLIN3O60664 434 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 HPGDP15428 266 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 PSMA3P25788 255 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ACVR2AP27037 513 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CDK8P49336 464 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms