RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 RBM22Q9NW64 420 aaKnown RBP eCLIP8.65□□□□□ -1.02
CAPN3-208ENST00000397204 KCND3Q9UK17 655 aa8.65□□□□□ -1.02
CAPN3-208ENST00000397204 CHKBQ9Y259 395 aa8.65□□□□□ -1.02
CAPN3-208ENST00000397204 DYRK1BQ9Y463 629 aa8.65□□□□□ -1.02
CAPN3-208ENST00000397204 PRKAB1Q9Y478 270 aa8.65□□□□□ -1.02
CAPN3-208ENST00000397204 OAS3Q9Y6K5 1087 aaKnown RBP8.65□□□□□ -1.02
CAPN3-208ENST00000397204 RPS6KL1Q9Y6S9 549 aa8.65□□□□□ -1.02
CAPN3-208ENST00000397204 ANKRD36A6QL64 1941 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 MN1Q10571 1320 aaPredicted RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 LILRA5A6NI73 299 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 LRRC53A6NM62 1247 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 ANKRD66B4E2M5 251 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 DDX3XO00571 662 aaKnown RBP eCLIP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 GRID2O43424 1007 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 SNX2O60749 519 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 C9P02748 559 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 ACP5P13686 325 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 TCF4P15884 667 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 GARSP41250 739 aaKnown RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 ZNF165P49910 485 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 UBE2IP63279 158 aaKnown RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 FOXM1Q08050 763 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 KLHL30Q0D2K2 578 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 IHHQ14623 411 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 TLR1Q15399 786 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 IFI16Q16666 785 aaKnown RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 SMTNL2Q2TAL5 461 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 C4orf17Q53FE4 359 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 CCDC122Q5T0U0 273 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 TIGD7Q6NT04 549 aaPredicted RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 TMEM214Q6NUQ4 689 aaKnown RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 PHYKPLQ8IUZ5 450 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 CCDC13Q8IYE1 715 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 NIPA2Q8N8Q9 360 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 ARRDC2Q8TBH0 407 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 FAM71BQ8TC56 605 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 MIB2Q96AX9 1013 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 PLEKHG4BQ96PX9 1271 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 TBC1D10AQ9BXI6 508 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 TDRD1Q9BXT4 1180 aaKnown RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 ULBP3Q9BZM4 244 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 HSD3B7Q9H2F3 369 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 PCDH9Q9HC56 1237 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 LRRC4CQ9HCJ2 640 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 TRIM39Q9HCM9 518 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 TIMMDC1Q9NPL8 285 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 SIDT1Q9NXL6 827 aaKnown RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 PKD2L2Q9NZM6 624 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 MYO1AQ9UBC5 1043 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 IP6K2Q9UHH9 426 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 PADI1Q9ULC6 663 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 KCNK6Q9Y257 313 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 PLAAQ9Y263 795 aa8.64□□□□□ -1.03
CAPN3-208ENST00000397204 PCYT1BQ9Y5K3 369 aaPredicted RBP8.64□□□□□ -1.03
CAPN3-208ENST00000397204 ZFC3H1O60293 1989 aaKnown RBP8.63□□□□□ -1.03
CAPN3-208ENST00000397204 ICE1Q9Y2F5 2266 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 C1orf232A0A0U1RR37 186 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 GOLGA6L3A6NEY3 463 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 UBXN7O94888 489 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 VIPP01282 170 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 MT-ND3P03897 115 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 LORP23490 312 aaPredicted RBP8.63□□□□□ -1.03
CAPN3-208ENST00000397204 F8A1P23610 371 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 DLSTP36957 453 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 MAPK9P45984 424 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 DSC2Q02487 901 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 GALNT2Q10471 571 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 KRT81Q14533 505 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 PAFAH1B3Q15102 231 aaKnown RBP8.63□□□□□ -1.03
CAPN3-208ENST00000397204 STX1AQ16623 288 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 HADHQ16836 314 aaKnown RBP8.63□□□□□ -1.03
CAPN3-208ENST00000397204 FILIP1LQ4L180 1135 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 HENMT1Q5T8I9 393 aaKnown RBP8.63□□□□□ -1.03
CAPN3-208ENST00000397204 TXNRD3NBQ6F5E7 133 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 TMEM26Q6ZUK4 368 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 ASB18Q6ZVZ8 466 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 RBM12BQ8IXT5 1001 aaKnown RBP8.63□□□□□ -1.03
CAPN3-208ENST00000397204 FCRL4Q96PJ5 515 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 MLPHQ9BV36 600 aaPredicted RBP8.63□□□□□ -1.03
CAPN3-208ENST00000397204 ADGRE3Q9BY15 652 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 PRDM8Q9NQV8 689 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 RAD18Q9NS91 495 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 KLC4Q9NSK0 619 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 ATXN10Q9UBB4 475 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 EPHA6Q9UF33 1036 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 KLHL3Q9UH77 587 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 CROTQ9UKG9 612 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 POLHQ9Y253 713 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 TP53TG5Q9Y2B4 290 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 PCDHGA6Q9Y5G7 932 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 PCDHGA11Q9Y5H2 935 aa8.63□□□□□ -1.03
CAPN3-208ENST00000397204 BZW2Q9Y6E2 419 aaKnown RBP8.63□□□□□ -1.03
CAPN3-208ENST00000397204 PIPSLA2A3N6 862 aa8.62□□□□□ -1.03
CAPN3-208ENST00000397204 FADS2P1A8MWK0 482 aa8.62□□□□□ -1.03
CAPN3-208ENST00000397204 TMEM229AB2RXF0 380 aa8.62□□□□□ -1.03
CAPN3-208ENST00000397204 MYO1FO00160 1098 aa8.62□□□□□ -1.03
CAPN3-208ENST00000397204 CHUKO15111 745 aa8.62□□□□□ -1.03
CAPN3-208ENST00000397204 MTSS1O43312 755 aa8.62□□□□□ -1.03
CAPN3-208ENST00000397204 KATNA1O75449 491 aa8.62□□□□□ -1.03
CAPN3-208ENST00000397204 SPAG6O75602 509 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms