RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 IL22RA2Q969J5 263 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 HDAC11Q96DB2 347 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 WDFY2Q96P53 400 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 CLSTN3Q9BQT9 956 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 TRIM9Q9C026 710 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 Q9N2J8 555 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 SMPD3Q9NY59 655 aaPredicted RBP-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 SNTG2Q9NY99 539 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 SERPINB13Q9UIV8 391 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 PPP1R3CQ9UQK1 317 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 APOBEC2Q9Y235 224 aaKnown RBP-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 WDR37Q9Y2I8 494 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 PUS1Q9Y606 427 aaKnown RBP eCLIP-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 MUC17Q685J3 4493 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 PDE4DIPQ5VU43 2346 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 A0A087WV48 116 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM8BA6NDV4 472 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 RHPN2P1A8MT19 583 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 TRIM49D1C9J1S8 452 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 SH3BGRLO75368 114 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 KHDRBS3O75525 346 aaKnown RBP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 LARGE1O95461 756 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 PNPP00491 289 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 C1QCP02747 245 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF688P0C7X2 276 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 P0C880 135 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAM106CPP0CH98 169 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 ACP2P11117 423 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 FCGR2AP12318 317 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF23P17027 643 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 POLR2CP19387 275 aaPredicted RBP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 COL8A2P25067 703 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 APLNRP35414 380 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 AHRP35869 848 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 OPRL1P41146 370 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 HDAC4P56524 1084 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 MEF2CQ06413 473 aaPredicted RBP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 SS18Q15532 418 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 C21orf62-AS1Q17RA5 79 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 VWA2Q5GFL6 755 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 LELP1Q5T871 98 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM268Q5VZI3 342 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 PLAG1Q6DJT9 500 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 RPUSD3Q6P087 351 aaKnown RBP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 TLDC1Q6P9B6 456 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 SLC25A34Q6PIV7 304 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 MFSD7Q6UXD7 560 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 B3GNT6Q6ZMB0 384 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 Q75L30 129 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 HAUS6Q7Z4H7 955 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM135Q86UB9 458 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 HOGA1Q86XE5 327 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 PHOSPHO2Q8TCD6 241 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 PPM1EQ8WY54 764 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 SUSD6Q92537 303 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 ATOH1Q92858 354 aaPredicted RBP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 PIGTQ969N2 578 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF597Q96LX8 424 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 FRG2BQ96QU4 278 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 DNAJC2Q99543 621 aaKnown RBP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 CMKLR1Q99788 373 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 UBAC1Q9BSL1 405 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 STK31Q9BXU1 1019 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAM126AQ9BYI3 521 aaPredicted RBP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 TRIM54Q9BYV2 358 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 SLC13A1Q9BZW2 595 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 HOXD1Q9GZZ0 328 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 XRN2Q9H0D6 950 aaKnown RBP eCLIP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 SLC25A32Q9H2D1 315 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 PDE11AQ9HCR9 933 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 EXOSC3Q9NQT5 275 aaKnown RBP-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 FBXO28Q9NVF7 368 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 CLEC4EQ9ULY5 219 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 PSG11Q9UQ72 335 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 SMCHD1A6NHR9 2005 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 SMARCA4P51532 1647 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 DCHS2Q6V1P9 2916 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 MGAQ8IWI9 3026 aa-0.83□□□□□ -2.54
RNU6-540P-201ENST00000384622 PKHD1P08F94 4074 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 DYNC1H1Q14204 4646 aaKnown RBP-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 CACNA1DQ01668 2161 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 IGKV1D-8A0A087WSZ0 117 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 ANO9A1A5B4 782 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM247A6NEH6 219 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 C3orf84H3BNL1 204 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF197O14709 1029 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 TNFSF11O14788 317 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF217O75362 1048 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 STK10O94804 968 aaKnown RBP-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 GIG44P09565 113 aaPredicted RBP-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 HOXB7P09629 217 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 MT1HL1P0DM35 61 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 TFPIP10646 304 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 ACHEP22303 614 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 CSTF2P33240 577 aaKnown RBP eCLIP-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 ARCN1P48444 511 aaKnown RBP-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 ERFP50548 548 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 ARFIP2P53365 341 aa-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 CYCSP99999 105 aaKnown RBP-0.84□□□□□ -2.54
RNU6-540P-201ENST00000384622 DEFA5Q01523 94 aa-0.84□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms