RNA–Protein interactions for RNA: snR54

snR54, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR54, Length 86 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR54	snR54	YLR257W	Q06146	321 aa	Known RBP	4.61	□□□□□ -1.67
snR54	snR54	PUS7	Q08647	676 aa	Known RBP	4.61	□□□□□ -1.67
snR54	snR54	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
snR54	snR54	VMA4	P22203	233 aa	Known RBP	4.6	□□□□□ -1.67
snR54	snR54	PRO1	P32264	428 aa		4.6	□□□□□ -1.67
snR54	snR54	HSP78	P33416	811 aa		4.6	□□□□□ -1.67
snR54	snR54	PEX7	P39108	375 aa		4.6	□□□□□ -1.67
snR54	snR54	PIC2	P40035	300 aa		4.6	□□□□□ -1.67
snR54	snR54	SSY1	Q03770	852 aa		4.6	□□□□□ -1.67
snR54	snR54	TRE1	Q08919	783 aa		4.6	□□□□□ -1.67
snR54	snR54	ATE1	P16639	503 aa		4.59	□□□□□ -1.67
snR54	snR54	RET1	P22276	1149 aa	Known RBP	4.59	□□□□□ -1.67
snR54	snR54	SEG2	P34250	1132 aa		4.59	□□□□□ -1.67
snR54	snR54	RDH54	P38086	958 aa		4.59	□□□□□ -1.67
snR54	snR54	RSA3	Q05942	220 aa	Known RBP	4.59	□□□□□ -1.67
snR54	snR54	RNQ1	P25367	405 aa		4.58	□□□□□ -1.68
snR54	snR54	ADP1	P25371	1049 aa		4.58	□□□□□ -1.68
snR54	snR54	PTC7	P38797	343 aa		4.58	□□□□□ -1.68
snR54	snR54	IRC24	P40580	263 aa		4.58	□□□□□ -1.68
snR54	snR54	POL32	P47110	350 aa		4.58	□□□□□ -1.68
snR54	snR54	DFG16	Q99234	619 aa		4.58	□□□□□ -1.68
snR54	snR54	DED1	P06634	604 aa	Known RBP	4.57	□□□□□ -1.68
snR54	snR54	SEC23	P15303	768 aa	Known RBP	4.57	□□□□□ -1.68
snR54	snR54	MCM2	P29469	868 aa		4.57	□□□□□ -1.68
snR54	snR54	SLD2	P34252	453 aa		4.57	□□□□□ -1.68
snR54	snR54	ATG14	P38270	344 aa		4.57	□□□□□ -1.68
snR54	snR54	YGR122W	P53272	402 aa		4.57	□□□□□ -1.68
snR54	snR54	ELM1	P32801	640 aa		4.56	□□□□□ -1.68
snR54	snR54	ADD66	P36040	267 aa		4.56	□□□□□ -1.68
snR54	snR54	HSE1	P38753	452 aa		4.56	□□□□□ -1.68
snR54	snR54	RPS26A	P39938	119 aa	Known RBP	4.56	□□□□□ -1.68
snR54	snR54	RPS26B	P39939	119 aa	Known RBP	4.56	□□□□□ -1.68
snR54	snR54	GTS1	P40956	396 aa		4.56	□□□□□ -1.68
snR54	snR54	YJL045W	P47052	634 aa		4.56	□□□□□ -1.68
snR54	snR54	NOP8	Q08287	484 aa	Predicted RBP	4.56	□□□□□ -1.68
snR54	snR54	LAP2	Q10740	671 aa		4.56	□□□□□ -1.68
snR54	snR54	LPX1	Q12405	387 aa	Known RBP	4.56	□□□□□ -1.68
snR54	snR54	SAM35	P14693	329 aa		4.55	□□□□□ -1.68
snR54	snR54	PRE9	P23638	258 aa	Known RBP	4.55	□□□□□ -1.68
snR54	snR54	AFG2	P32794	780 aa		4.55	□□□□□ -1.68
snR54	snR54	YHL012W	P38709	493 aa		4.55	□□□□□ -1.68
snR54	snR54	QNS1	P38795	714 aa	Known RBP	4.55	□□□□□ -1.68
snR54	snR54	FYV10	P40492	516 aa		4.55	□□□□□ -1.68
snR54	snR54	SPR28	Q04921	423 aa		4.55	□□□□□ -1.68
snR54	snR54	EST2	Q06163	884 aa		4.55	□□□□□ -1.68
snR54	snR54	AOS1	Q06624	347 aa		4.55	□□□□□ -1.68
snR54	snR54	HRK1	Q08732	759 aa	Known RBP	4.55	□□□□□ -1.68
snR54	snR54	RAD2	P07276	1031 aa		4.54	□□□□□ -1.68
snR54	snR54	CYC8	P14922	966 aa		4.54	□□□□□ -1.68
snR54	snR54	GAS1	P22146	559 aa	Known RBP	4.54	□□□□□ -1.68
snR54	snR54	MRPS18	P42847	217 aa		4.54	□□□□□ -1.68
snR54	snR54	ECL1	P48235	211 aa		4.54	□□□□□ -1.68
snR54	snR54	RKM2	Q03942	479 aa		4.54	□□□□□ -1.68
snR54	snR54	RRP15	Q06511	250 aa	Predicted RBP	4.54	□□□□□ -1.68
snR54	snR54	HDA2	Q06629	674 aa		4.54	□□□□□ -1.68
snR54	snR54	MGE1	P38523	228 aa		4.53	□□□□□ -1.68
snR54	snR54	GPB2	P39717	880 aa		4.53	□□□□□ -1.68
snR54	snR54	ROD1	Q02805	837 aa		4.53	□□□□□ -1.68
snR54	snR54	MCD1	Q12158	566 aa		4.53	□□□□□ -1.68
snR54	snR54	RAT1	Q02792	1006 aa	Known RBP	4.52	□□□□□ -1.69
snR54	snR54	KIP1	P28742	1111 aa		4.51	□□□□□ -1.69
snR54	snR54	ALG3	P38179	458 aa		4.51	□□□□□ -1.69
snR54	snR54	VPS53	P47061	822 aa		4.51	□□□□□ -1.69
snR54	snR54	YJR107W	P47145	328 aa		4.51	□□□□□ -1.69
snR54	snR54	ORC3	P54790	616 aa		4.51	□□□□□ -1.69
snR54	snR54	CDA2	Q06703	312 aa		4.51	□□□□□ -1.69
snR54	snR54	MRL1	Q06815	381 aa		4.51	□□□□□ -1.69
snR54	snR54	RCL1	Q08096	367 aa	Predicted RBP	4.51	□□□□□ -1.69
snR54	snR54	YDL177C	Q12257	170 aa		4.51	□□□□□ -1.69
snR54	snR54	PTC5	Q12511	572 aa		4.51	□□□□□ -1.69
snR54	snR54	YSC84	P32793	468 aa		4.5	□□□□□ -1.69
snR54	snR54	AIM26	P32858	118 aa		4.5	□□□□□ -1.69
snR54	snR54	TSA1	P34760	196 aa	Known RBP	4.5	□□□□□ -1.69
snR54	snR54	ETP1	P38748	585 aa	Known RBP	4.5	□□□□□ -1.69
snR54	snR54	MDL2	P33311	773 aa		4.49	□□□□□ -1.69
snR54	snR54	HXT13	P39924	564 aa		4.49	□□□□□ -1.69
snR54	snR54	NIT1	P40447	199 aa		4.49	□□□□□ -1.69
snR54	snR54	GNP1	P48813	663 aa		4.49	□□□□□ -1.69
snR54	snR54	PRP43	P53131	767 aa	Known RBP	4.49	□□□□□ -1.69
snR54	snR54	HXT17	P53631	564 aa		4.49	□□□□□ -1.69
snR54	snR54	HXT15	P54854	567 aa		4.49	□□□□□ -1.69
snR54	snR54	GCR1	P07261	785 aa		4.48	□□□□□ -1.69
snR54	snR54	HEM3	P28789	327 aa		4.48	□□□□□ -1.69
snR54	snR54	MKK2	P32491	506 aa		4.48	□□□□□ -1.69
snR54	snR54	SEC8	P32855	1065 aa		4.48	□□□□□ -1.69
snR54	snR54	UBP5	P39944	805 aa		4.48	□□□□□ -1.69
snR54	snR54	SIW14	P53965	281 aa		4.48	□□□□□ -1.69
snR54	snR54	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.48	□□□□□ -1.69	not detected
snR54	snR54	TAF13	P11747	167 aa		4.47	□□□□□ -1.69
snR54	snR54	PEP7	P32609	515 aa		4.47	□□□□□ -1.69
snR54	snR54	SRO9	P25567	434 aa	Known RBP	4.46	□□□□□ -1.7
snR54	snR54	YFL054C	P43549	646 aa		4.46	□□□□□ -1.7
snR54	snR54	MRPL22	P53881	309 aa		4.46	□□□□□ -1.7
snR54	snR54	OYE2	Q03558	400 aa	Known RBP	4.46	□□□□□ -1.7
snR54	snR54	ESF1	Q06344	628 aa	Known RBP	4.46	□□□□□ -1.7
snR54	snR54	RSC58	Q07979	502 aa		4.46	□□□□□ -1.7
snR54	snR54	SPO21	Q12411	609 aa		4.46	□□□□□ -1.7
snR54	snR54	COQ4	O13525	335 aa		4.45	□□□□□ -1.7
snR54	snR54	AIM3	P38266	947 aa	Known RBP	4.45	□□□□□ -1.7
snR54	snR54	SPS1	P08458	490 aa		4.44	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 111.2 ms