RNA–Protein interactions for RNA: ENST00000617432.4

CUL3-216, Transcript of cullin 3, humanhuman

TSL 5 BASIC

Gene CUL3, Length 1,426 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL3-216ENST00000617432 PLCB2Q00722 1185 aa8.85□□□□□ -0.99
CUL3-216ENST00000617432 NSFL1CQ9UNZ2 370 aaKnown RBP8.85□□□□□ -0.99
CUL3-216ENST00000617432 DBN1Q16643 649 aa8.84□□□□□ -0.99
CUL3-216ENST00000617432 QPCTQ16769 361 aa8.84□□□□□ -0.99
CUL3-216ENST00000617432 KDM2AQ9Y2K7 1162 aa8.84□□□□□ -0.99
CUL3-216ENST00000617432 H7C1W4 665 aa8.83□□□□□ -1
CUL3-216ENST00000617432 ZBTB33Q86T24 672 aa8.83□□□□□ -1
CUL3-216ENST00000617432 TRERF1Q96PN7 1200 aa8.83□□□□□ -1
CUL3-216ENST00000617432 MKL2Q9ULH7 1088 aa8.83□□□□□ -1
CUL3-216ENST00000617432 SMARCA4P51532 1647 aa8.82□□□□□ -1
CUL3-216ENST00000617432 RNF144AP50876 292 aaPredicted RBP8.82□□□□□ -1
CUL3-216ENST00000617432 PRICKLE2Q7Z3G6 844 aa8.82□□□□□ -1
CUL3-216ENST00000617432 MX2P20592 715 aa8.81□□□□□ -1
CUL3-216ENST00000617432 SNRPNP63162 240 aaKnown RBP8.81□□□□□ -1
CUL3-216ENST00000617432 RIPOR1Q6ZS17 1223 aa8.81□□□□□ -1
CUL3-216ENST00000617432 BARGINQ6ZT62 677 aa8.81□□□□□ -1
CUL3-216ENST00000617432 KDF1Q8NAX2 398 aaPredicted RBP8.81□□□□□ -1
CUL3-216ENST00000617432 ZNF784Q8NCA9 323 aaPredicted RBP8.81□□□□□ -1
CUL3-216ENST00000617432 GTPBP3Q969Y2 492 aaKnown RBP8.81□□□□□ -1
CUL3-216ENST00000617432 TMPRSS4Q9NRS4 437 aa8.81□□□□□ -1
CUL3-216ENST00000617432 LIMD1Q9UGP4 676 aa8.81□□□□□ -1
CUL3-216ENST00000617432 RHOQP17081 205 aa8.8□□□□□ -1
CUL3-216ENST00000617432 LILRA1O75019 489 aa8.8□□□□□ -1
CUL3-216ENST00000617432 ADD1P35611 737 aaKnown RBP8.8□□□□□ -1
CUL3-216ENST00000617432 FKBPLQ9UIM3 349 aa8.8□□□□□ -1
CUL3-216ENST00000617432 COL8A1P27658 744 aa8.79□□□□□ -1
CUL3-216ENST00000617432 NBPF20Q3BBV1 942 aa8.79□□□□□ -1
CUL3-216ENST00000617432 RTL5Q5HYW3 569 aaPredicted RBP8.79□□□□□ -1
CUL3-216ENST00000617432 PARP9Q8IXQ6 854 aa8.79□□□□□ -1
CUL3-216ENST00000617432 DYRK1BQ9Y463 629 aa8.79□□□□□ -1
CUL3-216ENST00000617432 ATAD2BQ9ULI0 1458 aa8.79□□□□□ -1
CUL3-216ENST00000617432 ZC3H4Q9UPT8 1303 aaKnown RBP8.78□□□□□ -1
CUL3-216ENST00000617432 MAP2K3P46734 347 aa8.78□□□□□ -1
CUL3-216ENST00000617432 OXCT2Q9BYC2 517 aaPredicted RBP8.78□□□□□ -1
CUL3-216ENST00000617432 MROH2BQ7Z745 1585 aa8.77□□□□□ -1.01
CUL3-216ENST00000617432 MYSM1Q5VVJ2 828 aa8.77□□□□□ -1.01
CUL3-216ENST00000617432 HAP1P54257 671 aaPredicted RBP8.76□□□□□ -1.01
CUL3-216ENST00000617432 PTK2Q05397 1052 aa8.76□□□□□ -1.01
CUL3-216ENST00000617432 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.76□□□□□ -1.01
CUL3-216ENST00000617432 TRIM52Q96A61 297 aa8.76□□□□□ -1.01
CUL3-216ENST00000617432 NCAPD3P42695 1498 aa8.76□□□□□ -1.01
CUL3-216ENST00000617432 ERVH48-1M5A8F1 160 aa8.75□□□□□ -1.01
CUL3-216ENST00000617432 GPC1P35052 558 aa8.75□□□□□ -1.01
CUL3-216ENST00000617432 GPSM3Q9Y4H4 160 aa8.75□□□□□ -1.01
CUL3-216ENST00000617432 BAZ1AQ9NRL2 1556 aaPredicted RBP8.75□□□□□ -1.01
CUL3-216ENST00000617432 ZMYND10O75800 440 aa8.74□□□□□ -1.01
CUL3-216ENST00000617432 LCE3BQ5TA77 95 aa8.74□□□□□ -1.01
CUL3-216ENST00000617432 GAS2L1Q99501 681 aaPredicted RBP8.74□□□□□ -1.01
CUL3-216ENST00000617432 SHISA8B8ZZ34 492 aa8.73□□□□□ -1.01
CUL3-216ENST00000617432 OCSTAMPQ9BR26 566 aa8.73□□□□□ -1.01
CUL3-216ENST00000617432 RRAGCQ9HB90 399 aa8.73□□□□□ -1.01
CUL3-216ENST00000617432 RAB15P59190 212 aa8.72□□□□□ -1.01
CUL3-216ENST00000617432 CTDSPL2Q05D32 466 aa8.72□□□□□ -1.01
CUL3-216ENST00000617432 ADAM32Q8TC27 787 aa8.72□□□□□ -1.01
CUL3-216ENST00000617432 SMARCA2P51531 1590 aa8.72□□□□□ -1.01
CUL3-216ENST00000617432 HMGXB3Q12766 1538 aa8.71□□□□□ -1.01
CUL3-216ENST00000617432 C1QTNF9BB2RNN3 333 aa8.71□□□□□ -1.01
CUL3-216ENST00000617432 PIK3R2O00459 728 aa8.71□□□□□ -1.01
CUL3-216ENST00000617432 GRIN2CQ14957 1233 aa8.71□□□□□ -1.01
CUL3-216ENST00000617432 GDF2Q9UK05 429 aaPredicted RBP8.71□□□□□ -1.01
CUL3-216ENST00000617432 ITGB7P26010 798 aa8.71□□□□□ -1.02
CUL3-216ENST00000617432 KRTAP4-12Q9BQ66 201 aa8.71□□□□□ -1.02
CUL3-216ENST00000617432 CFHR5Q9BXR6 569 aa8.71□□□□□ -1.02
CUL3-216ENST00000617432 NUCKS1Q9H1E3 243 aaKnown RBP8.71□□□□□ -1.02
CUL3-216ENST00000617432 PEG3Q9GZU2 1588 aa8.7□□□□□ -1.02
CUL3-216ENST00000617432 ESPNB1AK53 854 aa8.7□□□□□ -1.02
CUL3-216ENST00000617432 POU4F2Q12837 409 aa8.7□□□□□ -1.02
CUL3-216ENST00000617432 ZMYM1Q5SVZ6 1142 aa8.7□□□□□ -1.02
CUL3-216ENST00000617432 EDARADDQ8WWZ3 215 aa8.7□□□□□ -1.02
CUL3-216ENST00000617432 KLRG1Q96E93 195 aa8.7□□□□□ -1.02
CUL3-216ENST00000617432 BAZ1BQ9UIG0 1483 aaKnown RBP8.69□□□□□ -1.02
CUL3-216ENST00000617432 WIZO95785 1651 aa8.69□□□□□ -1.02
CUL3-216ENST00000617432 WDR44Q5JSH3 913 aa8.69□□□□□ -1.02
CUL3-216ENST00000617432 PPP2R2DQ66LE6 453 aa8.69□□□□□ -1.02
CUL3-216ENST00000617432 LINC00114Q6XXX2 140 aa8.69□□□□□ -1.02
CUL3-216ENST00000617432 C1orf229Q6ZS94 237 aaPredicted RBP8.69□□□□□ -1.02
CUL3-216ENST00000617432 CD163Q86VB7 1156 aa8.69□□□□□ -1.02
CUL3-216ENST00000617432 SEMA6BQ9H3T3 888 aa8.69□□□□□ -1.02
CUL3-216ENST00000617432 NESP48681 1621 aa8.68□□□□□ -1.02
CUL3-216ENST00000617432 ATP5J2-PTCD1G3V325 749 aa8.68□□□□□ -1.02
CUL3-216ENST00000617432 DZIP3Q86Y13 1208 aaKnown RBP8.68□□□□□ -1.02
CUL3-216ENST00000617432 SUV39H2Q9H5I1 410 aa8.68□□□□□ -1.02
CUL3-216ENST00000617432 CYLDQ9NQC7 956 aa8.68□□□□□ -1.02
CUL3-216ENST00000617432 MEN1O00255 615 aa8.67□□□□□ -1.02
CUL3-216ENST00000617432 TRIM66O15016 1216 aa8.67□□□□□ -1.02
CUL3-216ENST00000617432 SEPT12Q8IYM1 358 aa8.67□□□□□ -1.02
CUL3-216ENST00000617432 F11P03951 625 aa8.66□□□□□ -1.02
CUL3-216ENST00000617432 CLK2P49760 499 aaKnown RBP8.66□□□□□ -1.02
CUL3-216ENST00000617432 NR6A1Q15406 480 aa8.66□□□□□ -1.02
CUL3-216ENST00000617432 SLC27A3Q5K4L6 730 aa8.66□□□□□ -1.02
CUL3-216ENST00000617432 NBPF10Q6P3W6 841 aaKnown RBP8.66□□□□□ -1.02
CUL3-216ENST00000617432 NBPF15Q8N660 670 aa8.66□□□□□ -1.02
CUL3-216ENST00000617432 GOLGA6L1Q8N7Z2 621 aa8.66□□□□□ -1.02
CUL3-216ENST00000617432 LRRN4Q8WUT4 740 aa8.66□□□□□ -1.02
CUL3-216ENST00000617432 PHF24Q9UPV7 400 aa8.66□□□□□ -1.02
CUL3-216ENST00000617432 GNB5O14775 395 aa8.65□□□□□ -1.02
CUL3-216ENST00000617432 HOXB4P17483 251 aaPredicted RBP8.65□□□□□ -1.02
CUL3-216ENST00000617432 A0A1W2PRU2 124 aa8.64□□□□□ -1.03
CUL3-216ENST00000617432 SPATA31C2B4DYI2 1134 aa8.64□□□□□ -1.03
CUL3-216ENST00000617432 GRIP2Q9C0E4 1043 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms