RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 PPP2R5AQ15172 486 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 VPS8Q8N3P4 1428 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 ERO1AQ96HE7 468 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 HDXQ7Z353 690 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 PPP1R9BQ96SB3 815 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 KINO60870 393 aaKnown RBP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 NBPF20Q3BBV1 942 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 WWC2Q6AWC2 1192 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 NBPF11Q86T75 865 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 BICD2Q8TD16 824 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 CCDC121Q6ZUS5 278 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 ZMAT2Q96NC0 199 aaKnown RBP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 KIF1BO60333 1816 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 SLU7O95391 586 aaKnown RBP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 TMF1P82094 1093 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 BIRC2Q13490 618 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 RRP7BPQ9NSQ0 103 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 INPP5BP32019 993 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 SPATS2Q86XZ4 545 aaKnown RBP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 C16orf45Q96MC5 204 aaPredicted RBP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 PIBF1Q8WXW3 757 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 SH3GL3Q99963 347 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 BAG4O95429 457 aaKnown RBP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 ODF2Q5BJF6 829 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 ZNF777Q9ULD5 760 aaPredicted RBP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 MSL1Q68DK7 614 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 NESP48681 1621 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 LUC7L3O95232 432 aaKnown RBP5.79□□□□□ -1.48
VPS13D-213ENST00000613099 SLC8A1P32418 973 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 MMS22LQ6ZRQ5 1243 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 DDX19BQ9UMR2 479 aa5.79□□□□□ -1.48
VPS13D-213ENST00000613099 EIF4G3O43432 1585 aaKnown RBP5.78□□□□□ -1.48
VPS13D-213ENST00000613099 SYCP1Q15431 976 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 SMARCE1Q969G3 411 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 TNMDQ9H2S6 317 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 CEP104O60308 925 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 TBC1D32Q96NH3 1257 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 SENP3Q9H4L4 574 aaPredicted RBP5.78□□□□□ -1.48
VPS13D-213ENST00000613099 MAP3K11Q16584 847 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 WHAMMP3Q1A5X7 153 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 LRSAM1Q6UWE0 723 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 TMX1Q9H3N1 280 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 CARMIL1Q5VZK9 1371 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 PDILTQ8N807 584 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 ANKS4BQ8N8V4 417 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 RAPGEF2Q9Y4G8 1499 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 ANKRD30AQ9BXX3 1397 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 CEP57L1Q8IYX8 460 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 INSRP06213 1382 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 MAGEA9P43362 315 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 MPNDQ8N594 471 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 FYB1O15117 783 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 TUBB2AQ13885 445 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 TUBB2BQ9BVA1 445 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 BRD4O60885 1362 aaPredicted RBP5.78□□□□□ -1.48
VPS13D-213ENST00000613099 KLHL10Q6JEL2 608 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 CCDC114Q96M63 670 aa5.78□□□□□ -1.48
VPS13D-213ENST00000613099 KIF5CO60282 957 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 NEDD9Q14511 834 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 TERF2Q15554 542 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 ZFYP08048 801 aaPredicted RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 CCDC92Q53HC0 331 aaPredicted RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 SUFUQ9UMX1 484 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 SNX21Q969T3 373 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 PUS7Q96PZ0 661 aaKnown RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 RAI14Q9P0K7 980 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 ARHGAP29Q52LW3 1261 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 COG6Q9Y2V7 657 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 PDCD2Q16342 344 aaPredicted RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 LRRFIP1Q32MZ4 808 aaKnown RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 SCLT1Q96NL6 688 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 ZKSCAN1P17029 563 aaPredicted RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 CCDC148Q8NFR7 591 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 GOPCQ9HD26 462 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 AK9Q5TCS8 1911 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 PPP1R12AO14974 1030 aaPredicted RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 CHD1O14646 1710 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 SPECC1LQ69YQ0 1117 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 EFCAB13Q8IY85 973 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 ANAPC4Q9UJX5 808 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 CFAP65Q6ZU64 1925 aaKnown RBP5.77□□□□□ -1.49
VPS13D-213ENST00000613099 PPFIBP1Q86W92 1011 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 USP25Q9UHP3 1055 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 U2AF2P26368 475 aaKnown RBP eCLIP5.77□□□□□ -1.495e-7■■■■□ 26.4
VPS13D-213ENST00000613099 CLIP2Q9UDT6 1046 aa5.77□□□□□ -1.49
VPS13D-213ENST00000613099 TOP2BQ02880 1626 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 SOX12O15370 315 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 SNW1Q13573 536 aaKnown RBP5.76□□□□□ -1.49
VPS13D-213ENST00000613099 ZNF365Q70YC5 407 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 PRDM4Q9UKN5 801 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 RAB3GAP2Q9H2M9 1393 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 FAM184BQ9ULE4 1060 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 PPFIA3O75145 1194 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 IBSPP21815 317 aaPredicted RBP5.76□□□□□ -1.49
VPS13D-213ENST00000613099 ZNF445P59923 1031 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 LMNTD2Q8IXW0 634 aa5.76□□□□□ -1.49
VPS13D-213ENST00000613099 A0A087WUV0 522 aaPredicted RBP5.76□□□□□ -1.49
VPS13D-213ENST00000613099 OPA1O60313 960 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms