RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 LRRC37A3O60309 1634 aa13.84□□□□□ -0.19
SYNE1-240ENST00000610489 FAM98CQ17RN3 349 aaKnown RBP13.83□□□□□ -0.19
SYNE1-240ENST00000610489 MRS2Q9HD23 443 aa13.83□□□□□ -0.19
SYNE1-240ENST00000610489 RXRBP28702 533 aa13.83□□□□□ -0.2
SYNE1-240ENST00000610489 AEBP1Q8IUX7 1158 aa13.83□□□□□ -0.2
SYNE1-240ENST00000610489 MIER1Q8N108 512 aa13.83□□□□□ -0.2
SYNE1-240ENST00000610489 BRWD3Q6RI45 1802 aa13.83□□□□□ -0.2
SYNE1-240ENST00000610489 PKD1L3Q7Z443 1732 aa13.83□□□□□ -0.2
SYNE1-240ENST00000610489 IL2RBP14784 551 aa13.82□□□□□ -0.2
SYNE1-240ENST00000610489 SULT6B1Q6IMI4 303 aa13.82□□□□□ -0.2
SYNE1-240ENST00000610489 SHANK3Q9BYB0 1731 aa13.81□□□□□ -0.2
SYNE1-240ENST00000610489 ONECUT3O60422 494 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-240ENST00000610489 HMOX1P09601 288 aa13.81□□□□□ -0.2
SYNE1-240ENST00000610489 U2AF1L5P0DN76 240 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-240ENST00000610489 U2AF1Q01081 240 aaKnown RBP eCLIP13.81□□□□□ -0.2
SYNE1-240ENST00000610489 CDCA7Q9BWT1 371 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-240ENST00000610489 OVOS2A0A0G2JMS6 1433 aa13.81□□□□□ -0.2
SYNE1-240ENST00000610489 CCER2I3L3R5 266 aa13.81□□□□□ -0.2
SYNE1-240ENST00000610489 RAPGEF4Q8WZA2 1011 aa13.81□□□□□ -0.2
SYNE1-240ENST00000610489 RGS12O14924 1447 aa13.8□□□□□ -0.2
SYNE1-240ENST00000610489 SAMD1Q6SPF0 538 aaPredicted RBP13.8□□□□□ -0.2
SYNE1-240ENST00000610489 PLEKHG2Q9H7P9 1386 aa13.79□□□□□ -0.2
SYNE1-240ENST00000610489 TNS2Q63HR2 1409 aa13.79□□□□□ -0.2
SYNE1-240ENST00000610489 WDR43Q15061 677 aaKnown RBP eCLIP13.79□□□□□ -0.2
SYNE1-240ENST00000610489 RSPH6AQ9H0K4 717 aa13.79□□□□□ -0.2
SYNE1-240ENST00000610489 A0A0G2JS52 829 aa13.78□□□□□ -0.2
SYNE1-240ENST00000610489 TATP17735 454 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-240ENST00000610489 MYT1Q01538 1121 aa13.78□□□□□ -0.2
SYNE1-240ENST00000610489 FCHSD2O94868 740 aa13.78□□□□□ -0.2
SYNE1-240ENST00000610489 SEPT12Q8IYM1 358 aa13.78□□□□□ -0.2
SYNE1-240ENST00000610489 PNISRQ8TF01 805 aaKnown RBP13.78□□□□□ -0.2
SYNE1-240ENST00000610489 PRKAR2BP31323 418 aa13.76□□□□□ -0.21
SYNE1-240ENST00000610489 DDB1Q16531 1140 aa13.76□□□□□ -0.21
SYNE1-240ENST00000610489 ADAMTS8Q9UP79 889 aa13.76□□□□□ -0.21
SYNE1-240ENST00000610489 EP400Q96L91 3159 aa13.76□□□□□ -0.21
SYNE1-240ENST00000610489 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.76□□□□□ -0.21
SYNE1-240ENST00000610489 VIRMAQ69YN4 1812 aaKnown RBP13.75□□□□□ -0.21
SYNE1-240ENST00000610489 EXOC5O00471 708 aa13.75□□□□□ -0.21
SYNE1-240ENST00000610489 ZCRB1Q8TBF4 217 aaKnown RBP13.75□□□□□ -0.21
SYNE1-240ENST00000610489 DLG5Q8TDM6 1919 aa13.74□□□□□ -0.21
SYNE1-240ENST00000610489 SPG7Q9UQ90 795 aa13.74□□□□□ -0.21
SYNE1-240ENST00000610489 U3KPZ7 1027 aaPredicted RBP13.74□□□□□ -0.21
SYNE1-240ENST00000610489 KAT6BQ8WYB5 2073 aa13.74□□□□□ -0.21
SYNE1-240ENST00000610489 AMOTQ4VCS5 1084 aa13.73□□□□□ -0.21
SYNE1-240ENST00000610489 PLEKHO1Q53GL0 409 aaPredicted RBP13.73□□□□□ -0.21
SYNE1-240ENST00000610489 PLEKHF1Q96S99 279 aa13.73□□□□□ -0.21
SYNE1-240ENST00000610489 PNNQ9H307 717 aaKnown RBP13.73□□□□□ -0.21
SYNE1-240ENST00000610489 PCDH11XQ9BZA7 1347 aa13.73□□□□□ -0.21
SYNE1-240ENST00000610489 PCDH11YQ9BZA8 1340 aa13.73□□□□□ -0.21
SYNE1-240ENST00000610489 PDE3BQ13370 1112 aa13.73□□□□□ -0.21
SYNE1-240ENST00000610489 PHACTR3Q96KR7 559 aa13.73□□□□□ -0.21
SYNE1-240ENST00000610489 KRT27Q7Z3Y8 459 aa13.72□□□□□ -0.21
SYNE1-240ENST00000610489 MAPK8IP3Q9UPT6 1336 aa13.71□□□□□ -0.21
SYNE1-240ENST00000610489 CYP27B1O15528 508 aa13.71□□□□□ -0.21
SYNE1-240ENST00000610489 NEFMP07197 916 aa13.71□□□□□ -0.21
SYNE1-240ENST00000610489 CCDC146Q8IYE0 955 aa13.71□□□□□ -0.21
SYNE1-240ENST00000610489 FAM9BQ8IZU0 186 aa13.71□□□□□ -0.21
SYNE1-240ENST00000610489 SBF2Q86WG5 1849 aa13.71□□□□□ -0.21
SYNE1-240ENST00000610489 MTHFSDQ2M296 383 aaKnown RBP13.71□□□□□ -0.22
SYNE1-240ENST00000610489 ZNF530Q6P9A1 599 aaPredicted RBP13.71□□□□□ -0.22
SYNE1-240ENST00000610489 MARCH10Q8NA82 808 aaPredicted RBP13.71□□□□□ -0.22
SYNE1-240ENST00000610489 DDX54Q8TDD1 881 aaKnown RBP13.71□□□□□ -0.22
SYNE1-240ENST00000610489 SCN11AQ9UI33 1791 aa13.7□□□□□ -0.22
SYNE1-240ENST00000610489 GAS2L2Q8NHY3 880 aa13.7□□□□□ -0.22
SYNE1-240ENST00000610489 RUNDC1Q96C34 613 aa13.7□□□□□ -0.22
SYNE1-240ENST00000610489 DOT1LQ8TEK3 1739 aa13.7□□□□□ -0.22
SYNE1-240ENST00000610489 TOGARAM1Q9Y4F4 1720 aa13.7□□□□□ -0.22
SYNE1-240ENST00000610489 PHKG2P15735 406 aa13.69□□□□□ -0.22
SYNE1-240ENST00000610489 IFNL2Q8IZJ0 200 aa13.69□□□□□ -0.22
SYNE1-240ENST00000610489 ADAMTS7Q9UKP4 1686 aa13.69□□□□□ -0.22
SYNE1-240ENST00000610489 C1orf141Q5JVX7 400 aa13.68□□□□□ -0.22
SYNE1-240ENST00000610489 FAM182BQ5T319 152 aa13.68□□□□□ -0.22
SYNE1-240ENST00000610489 ITGB4P16144 1822 aa13.68□□□□□ -0.22
SYNE1-240ENST00000610489 BCL9O00512 1426 aa13.68□□□□□ -0.22
SYNE1-240ENST00000610489 NKX1-1Q15270 411 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-240ENST00000610489 NFE2L2Q16236 605 aa13.67□□□□□ -0.22
SYNE1-240ENST00000610489 AKAP4Q5JQC9 854 aa13.67□□□□□ -0.22
SYNE1-240ENST00000610489 MAP3K5Q99683 1374 aa13.67□□□□□ -0.22
SYNE1-240ENST00000610489 NHSQ6T4R5 1651 aa13.66□□□□□ -0.22
SYNE1-240ENST00000610489 KDM6AO15550 1401 aaPredicted RBP13.66□□□□□ -0.22
SYNE1-240ENST00000610489 HSP90AB1P08238 724 aaKnown RBP13.66□□□□□ -0.22
SYNE1-240ENST00000610489 TMPOP42166 694 aaKnown RBP13.66□□□□□ -0.22
SYNE1-240ENST00000610489 FAM196AQ6ZSG2 479 aa13.66□□□□□ -0.22
SYNE1-240ENST00000610489 GNAT3A8MTJ3 354 aa13.65□□□□□ -0.22
SYNE1-240ENST00000610489 APAF1O14727 1248 aa13.65□□□□□ -0.22
SYNE1-240ENST00000610489 MPRIPQ6WCQ1 1025 aa13.64□□□□□ -0.23
SYNE1-240ENST00000610489 ILDR2Q71H61 639 aa13.64□□□□□ -0.23
SYNE1-240ENST00000610489 DCAF5Q96JK2 942 aa13.64□□□□□ -0.23
SYNE1-240ENST00000610489 RRP7AQ9Y3A4 280 aaKnown RBP13.64□□□□□ -0.23
SYNE1-240ENST00000610489 SIPA1L3O60292 1781 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-240ENST00000610489 BTAF1O14981 1849 aa13.63□□□□□ -0.23
SYNE1-240ENST00000610489 MRC1P22897 1456 aa13.63□□□□□ -0.23
SYNE1-240ENST00000610489 TNS1Q9HBL0 1735 aaKnown RBP13.63□□□□□ -0.23
SYNE1-240ENST00000610489 RIPK4P57078 832 aa13.63□□□□□ -0.23
SYNE1-240ENST00000610489 HTATSF1O43719 755 aaKnown RBP13.62□□□□□ -0.23
SYNE1-240ENST00000610489 NEUROD2Q15784 382 aa13.62□□□□□ -0.23
SYNE1-240ENST00000610489 ZNF219Q9P2Y4 722 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-240ENST00000610489 CEMIPQ8WUJ3 1361 aa13.61□□□□□ -0.23
SYNE1-240ENST00000610489 RNMTO43148 476 aaKnown RBP13.61□□□□□ -0.23
SYNE1-240ENST00000610489 IL17REQ8NFR9 667 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms