RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 ZCRB1Q8TBF4 217 aaKnown RBP14.2□□□□□ -0.14
LIG1-210ENST00000596332 PNISRQ8TF01 805 aaKnown RBP14.2□□□□□ -0.14
LIG1-210ENST00000596332 TNS2Q63HR2 1409 aa14.19□□□□□ -0.14
LIG1-210ENST00000596332 EXOC5O00471 708 aa14.19□□□□□ -0.14
LIG1-210ENST00000596332 U2SURPO15042 1029 aaKnown RBP14.19□□□□□ -0.14
LIG1-210ENST00000596332 KRT27Q7Z3Y8 459 aa14.19□□□□□ -0.14
LIG1-210ENST00000596332 MIER1Q8N108 512 aa14.19□□□□□ -0.14
LIG1-210ENST00000596332 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.19□□□□□ -0.14
LIG1-210ENST00000596332 FCHSD2O94868 740 aa14.18□□□□□ -0.14
LIG1-210ENST00000596332 TATP17735 454 aaPredicted RBP14.18□□□□□ -0.14
LIG1-210ENST00000596332 ADRA2BP18089 450 aa14.18□□□□□ -0.14
LIG1-210ENST00000596332 PTF1AQ7RTS3 328 aa14.18□□□□□ -0.14
LIG1-210ENST00000596332 RAPGEF4Q8WZA2 1011 aa14.18□□□□□ -0.14
LIG1-210ENST00000596332 ADAMTS8Q9UP79 889 aa14.18□□□□□ -0.14
LIG1-210ENST00000596332 PLEKHG2Q9H7P9 1386 aa14.18□□□□□ -0.14
LIG1-210ENST00000596332 PKD1L3Q7Z443 1732 aa14.18□□□□□ -0.14
LIG1-210ENST00000596332 BCL9O00512 1426 aa14.17□□□□□ -0.14
LIG1-210ENST00000596332 U2AF1L5P0DN76 240 aaPredicted RBP14.17□□□□□ -0.14
LIG1-210ENST00000596332 U2AF1Q01081 240 aaKnown RBP eCLIP14.17□□□□□ -0.14
LIG1-210ENST00000596332 EP400Q96L91 3159 aa14.17□□□□□ -0.14
LIG1-210ENST00000596332 PRKAR2BP31323 418 aa14.16□□□□□ -0.14
LIG1-210ENST00000596332 NKX1-1Q15270 411 aaPredicted RBP14.16□□□□□ -0.14
LIG1-210ENST00000596332 MTHFSDQ2M296 383 aaKnown RBP14.16□□□□□ -0.14
LIG1-210ENST00000596332 NUDCQ9Y266 331 aa14.16□□□□□ -0.14
LIG1-210ENST00000596332 PHKG2P15735 406 aa14.15□□□□□ -0.14
LIG1-210ENST00000596332 DDX54Q8TDD1 881 aaKnown RBP14.15□□□□□ -0.14
LIG1-210ENST00000596332 PDE3BQ13370 1112 aa14.14□□□□□ -0.15
LIG1-210ENST00000596332 A0A0G2JS52 829 aa14.13□□□□□ -0.15
LIG1-210ENST00000596332 MYT1Q01538 1121 aa14.13□□□□□ -0.15
LIG1-210ENST00000596332 PLEKHO1Q53GL0 409 aaPredicted RBP14.13□□□□□ -0.15
LIG1-210ENST00000596332 MRS2Q9HD23 443 aa14.13□□□□□ -0.15
LIG1-210ENST00000596332 KCNQ2O43526 872 aa14.12□□□□□ -0.15
LIG1-210ENST00000596332 AMOTQ4VCS5 1084 aa14.12□□□□□ -0.15
LIG1-210ENST00000596332 SPG7Q9UQ90 795 aa14.12□□□□□ -0.15
LIG1-210ENST00000596332 CCER2I3L3R5 266 aa14.11□□□□□ -0.15
LIG1-210ENST00000596332 KDM6AO15550 1401 aaPredicted RBP14.11□□□□□ -0.15
LIG1-210ENST00000596332 FAM196AQ6ZSG2 479 aa14.11□□□□□ -0.15
LIG1-210ENST00000596332 UPF1Q92900 1129 aaKnown RBP eCLIP14.11□□□□□ -0.15
LIG1-210ENST00000596332 PCDH11XQ9BZA7 1347 aa14.11□□□□□ -0.15
LIG1-210ENST00000596332 PCDH11YQ9BZA8 1340 aa14.11□□□□□ -0.15
LIG1-210ENST00000596332 ZNF530Q6P9A1 599 aaPredicted RBP14.1□□□□□ -0.15
LIG1-210ENST00000596332 IFNL2Q8IZJ0 200 aa14.1□□□□□ -0.15
LIG1-210ENST00000596332 LGR6Q9HBX8 967 aa14.1□□□□□ -0.15
LIG1-210ENST00000596332 ADAMTS7Q9UKP4 1686 aa14.1□□□□□ -0.15
LIG1-210ENST00000596332 TOGARAM1Q9Y4F4 1720 aa14.1□□□□□ -0.15
LIG1-210ENST00000596332 CCDC146Q8IYE0 955 aa14.09□□□□□ -0.15
LIG1-210ENST00000596332 IL17REQ8NFR9 667 aa14.09□□□□□ -0.15
LIG1-210ENST00000596332 AKAP4Q5JQC9 854 aa14.08□□□□□ -0.16
LIG1-210ENST00000596332 ACSBG1Q96GR2 724 aa14.08□□□□□ -0.16
LIG1-210ENST00000596332 SBF2Q86WG5 1849 aa14.08□□□□□ -0.16
LIG1-210ENST00000596332 TRIM37O94972 964 aa14.07□□□□□ -0.16
LIG1-210ENST00000596332 PRIM1P49642 420 aaKnown RBP14.07□□□□□ -0.16
LIG1-210ENST00000596332 MPRIPQ6WCQ1 1025 aa14.07□□□□□ -0.16
LIG1-210ENST00000596332 RUNDC1Q96C34 613 aa14.07□□□□□ -0.16
LIG1-210ENST00000596332 RNMTO43148 476 aaKnown RBP14.06□□□□□ -0.16
LIG1-210ENST00000596332 WDR43Q15061 677 aaKnown RBP eCLIP14.06□□□□□ -0.16
LIG1-210ENST00000596332 DCAF5Q96JK2 942 aa14.06□□□□□ -0.16
LIG1-210ENST00000596332 BCL11BQ9C0K0 894 aaPredicted RBP14.06□□□□□ -0.16
LIG1-210ENST00000596332 CEMIPQ8WUJ3 1361 aa14.06□□□□□ -0.16
LIG1-210ENST00000596332 TMPOP42166 694 aaKnown RBP14.05□□□□□ -0.16
LIG1-210ENST00000596332 NFE2L2Q16236 605 aa14.05□□□□□ -0.16
LIG1-210ENST00000596332 PROM2Q8N271 834 aa14.05□□□□□ -0.16
LIG1-210ENST00000596332 GAS2L2Q8NHY3 880 aa14.05□□□□□ -0.16
LIG1-210ENST00000596332 PIGBQ92521 554 aa14.05□□□□□ -0.16
LIG1-210ENST00000596332 TRIM35Q9UPQ4 493 aa14.05□□□□□ -0.16
LIG1-210ENST00000596332 GNAT3A8MTJ3 354 aa14.04□□□□□ -0.16
LIG1-210ENST00000596332 DCTN1Q14203 1278 aa14.04□□□□□ -0.16
LIG1-210ENST00000596332 NHSQ6T4R5 1651 aa14.04□□□□□ -0.16
LIG1-210ENST00000596332 TNS1Q9HBL0 1735 aaKnown RBP14.04□□□□□ -0.16
LIG1-210ENST00000596332 ERVV-2B6SEH9 535 aa14.03□□□□□ -0.16
LIG1-210ENST00000596332 SOCS7O14512 581 aa14.03□□□□□ -0.16
LIG1-210ENST00000596332 APAF1O14727 1248 aa14.03□□□□□ -0.16
LIG1-210ENST00000596332 FAM9BQ8IZU0 186 aa14.03□□□□□ -0.16
LIG1-210ENST00000596332 RRP7AQ9Y3A4 280 aaKnown RBP14.03□□□□□ -0.16
LIG1-210ENST00000596332 MAP3K5Q99683 1374 aa14.03□□□□□ -0.16
LIG1-210ENST00000596332 DOT1LQ8TEK3 1739 aa14.03□□□□□ -0.16
LIG1-210ENST00000596332 MRC1P22897 1456 aa14.02□□□□□ -0.16
LIG1-210ENST00000596332 HTATSF1O43719 755 aaKnown RBP14.02□□□□□ -0.17
LIG1-210ENST00000596332 C1orf141Q5JVX7 400 aa14.02□□□□□ -0.17
LIG1-210ENST00000596332 MCM10Q7L590 875 aa14.02□□□□□ -0.17
LIG1-210ENST00000596332 NFATC2IPQ8NCF5 419 aa14.02□□□□□ -0.17
LIG1-210ENST00000596332 CAMKK2Q96RR4 588 aa14.02□□□□□ -0.17
LIG1-210ENST00000596332 PNNQ9H307 717 aaKnown RBP14.02□□□□□ -0.17
LIG1-210ENST00000596332 SCN11AQ9UI33 1791 aa14.01□□□□□ -0.17
LIG1-210ENST00000596332 SENP3-EIF4A1A0A087X0R7 540 aa14.01□□□□□ -0.17
LIG1-210ENST00000596332 HSP90AB1P08238 724 aaKnown RBP14.01□□□□□ -0.17
LIG1-210ENST00000596332 RIPK4P57078 832 aa14.01□□□□□ -0.17
LIG1-210ENST00000596332 DEFB132Q7Z7B7 95 aa14.01□□□□□ -0.17
LIG1-210ENST00000596332 THUMPD2Q9BTF0 503 aaKnown RBP14.01□□□□□ -0.17
LIG1-210ENST00000596332 SLC52A2Q9HAB3 445 aa14.01□□□□□ -0.17
LIG1-210ENST00000596332 ITGB4P16144 1822 aa14.01□□□□□ -0.17
LIG1-210ENST00000596332 DLG5Q8TDM6 1919 aa14□□□□□ -0.17
LIG1-210ENST00000596332 PLSCR1O15162 318 aa14□□□□□ -0.17
LIG1-210ENST00000596332 CCDC125Q86Z20 511 aa14□□□□□ -0.17
LIG1-210ENST00000596332 SLC4A9Q96Q91 983 aa14□□□□□ -0.17
LIG1-210ENST00000596332 ATG3Q9NT62 314 aa14□□□□□ -0.17
LIG1-210ENST00000596332 ASAP1Q9ULH1 1129 aa14□□□□□ -0.17
LIG1-210ENST00000596332 APBA3O96018 575 aa13.99□□□□□ -0.17
LIG1-210ENST00000596332 BTAF1O14981 1849 aa13.99□□□□□ -0.17
LIG1-210ENST00000596332 MAPK8IP3Q9UPT6 1336 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms