RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 POLMQ9NP87 494 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 PCDHB9Q9Y5E1 797 aa3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 ZNF608Q9ULD9 1512 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 J3QL48 77 aa3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 SIAH2O43255 324 aa3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 MAP2K3P46734 347 aa3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 HPS1Q92902 700 aa3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 KCTD15Q96SI1 283 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 POLR3EQ9NVU0 708 aa3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 NDUFB9Q9Y6M9 179 aa3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 MAGI1Q96QZ7 1491 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-211ENST00000584897 ZBBXA8MT70 800 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 WDR44Q5JSH3 913 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 TTLL8A6PVC2 850 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 SLC27A3Q5K4L6 730 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 C6orf118Q5T5N4 469 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 TRIM67Q6ZTA4 783 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.29□□□□□ -1.881e-9■■■■■ 139.7
SMCHD1-211ENST00000584897 ST8SIA5O15466 376 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 DCAF11Q8TEB1 546 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 CARD14Q9BXL6 1004 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 GJA3Q9Y6H8 435 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 H3BM21 787 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 F12P00748 615 aaPredicted RBP3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 NR1H3Q13133 447 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 LINC00528Q8N1L1 170 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 MEIOBQ8N635 442 aa3.29□□□□□ -1.88
SMCHD1-211ENST00000584897 DNMBPQ6XZF7 1577 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 FSHRP23945 695 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 EFHC2Q5JST6 749 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 PLA2G2CQ5R387 149 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 FIGNL1Q6PIW4 674 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 LYSMD3Q7Z3D4 306 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 FNBP4Q8N3X1 1017 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 PHOX2BQ99453 314 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 ADH1AP07327 375 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 PTGIRP43119 386 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 SKOR1P84550 965 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 GUCA2AQ02747 115 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 USP4Q13107 963 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 TMEM151AQ8N4L1 468 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 KDM4CQ9H3R0 1056 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 PCDHGC3Q9UN70 934 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 CABLES1Q8TDN4 633 aa3.28□□□□□ -1.88
SMCHD1-211ENST00000584897 ARID4AP29374 1257 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 CC2D2BQ6DHV5 1058 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 SYMPKQ92797 1274 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 PURBQ96QR8 312 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 ADAMTSL3P82987 1691 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 SNAPC4Q5SXM2 1469 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 BACH1O14867 736 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 GPR37L1O60883 481 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 TIMP2P16035 220 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 SLFNL1Q499Z3 407 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 SUPT5HO00267 1087 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 MAP7D1Q3KQU3 841 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 TRIM50Q86XT4 487 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 BEND7Q8N7W2 519 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 FOXJ1Q92949 421 aa3.27□□□□□ -1.89
SMCHD1-211ENST00000584897 LCE2BO14633 110 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 ERFEQ4G0M1 354 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 EMID1Q96A84 441 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 ZFP42Q96MM3 310 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 NOP53Q9NZM5 478 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 SPINT1O43278 529 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 USP17L8P0C7I0 530 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 FLIIQ13045 1269 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 PPP1R26Q5T8A7 1209 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 SH3BP5LQ7L8J4 393 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 NEDD1Q8NHV4 660 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 GDF2Q9UK05 429 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 TOPBP1Q92547 1522 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 PBRM1Q86U86 1689 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 CFAP99D6REC4 459 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 PCF11O94913 1555 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 TATP17735 454 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 C1orf216Q8TAB5 229 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 KIAA0586Q9BVV6 1533 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 DISP3Q9P2K9 1392 aa3.26□□□□□ -1.89
SMCHD1-211ENST00000584897 SEMA3FQ13275 785 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 PTCRAQ6ISU1 281 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 PCDHB15Q9Y5E8 787 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 MAP3K4Q9Y6R4 1608 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 ATP5J2-PTCD1G3V325 749 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 TMEM214Q6NUQ4 689 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 ADAM32Q8TC27 787 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 GNRH1P01148 92 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 RFC5P40937 340 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 NANOS1Q8WY41 292 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 GPBP1L1Q9HC44 474 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 MAP10Q9P2G4 905 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 GPC6Q9Y625 555 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 TLL2Q9Y6L7 1015 aa3.25□□□□□ -1.89
SMCHD1-211ENST00000584897 CEP170Q5SW79 1584 aa3.24□□□□□ -1.89
SMCHD1-211ENST00000584897 CDC14CA4D256 554 aa3.24□□□□□ -1.89
SMCHD1-211ENST00000584897 PPFIA3O75145 1194 aa3.24□□□□□ -1.89
SMCHD1-211ENST00000584897 NFX1Q12986 1120 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-211ENST00000584897 NBPF1Q3BBV0 1214 aa3.24□□□□□ -1.89
SMCHD1-211ENST00000584897 CFHR5Q9BXR6 569 aa3.24□□□□□ -1.89
SMCHD1-211ENST00000584897 LIMD1Q9UGP4 676 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms