RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 CYP2U1Q7Z449 544 aa8.37□□□□□ -1.07
NUP88-202ENST00000570937 PLPP7Q8NBV4 271 aa8.37□□□□□ -1.07
NUP88-202ENST00000570937 ATP5J2-PTCD1G3V325 749 aa8.36□□□□□ -1.07
NUP88-202ENST00000570937 PIK3CDO00329 1044 aa8.36□□□□□ -1.07
NUP88-202ENST00000570937 MYCP01106 439 aaPredicted RBP8.36□□□□□ -1.07
NUP88-202ENST00000570937 USP4Q13107 963 aa8.36□□□□□ -1.07
NUP88-202ENST00000570937 SIRT1Q96EB6 747 aa8.36□□□□□ -1.07
NUP88-202ENST00000570937 LZTS3O60299 673 aaPredicted RBP8.35□□□□□ -1.07
NUP88-202ENST00000570937 GLMNQ92990 594 aa8.35□□□□□ -1.07
NUP88-202ENST00000570937 TTLL8A6PVC2 850 aa8.34□□□□□ -1.07
NUP88-202ENST00000570937 UCN2Q96RP3 112 aa8.34□□□□□ -1.07
NUP88-202ENST00000570937 ZMYND15Q9H091 742 aa8.34□□□□□ -1.07
NUP88-202ENST00000570937 ESF1Q9H501 851 aaKnown RBP8.34□□□□□ -1.07
NUP88-202ENST00000570937 ZNF395Q9H8N7 513 aaPredicted RBP8.34□□□□□ -1.07
NUP88-202ENST00000570937 GNRH1P01148 92 aa8.33□□□□□ -1.08
NUP88-202ENST00000570937 INSM2Q96T92 566 aaPredicted RBP8.33□□□□□ -1.08
NUP88-202ENST00000570937 DNMT3LQ9UJW3 386 aa8.33□□□□□ -1.08
NUP88-202ENST00000570937 A0A1W2PRU2 124 aa8.32□□□□□ -1.08
NUP88-202ENST00000570937 SKIP12755 728 aa8.32□□□□□ -1.08
NUP88-202ENST00000570937 GPC1P35052 558 aa8.32□□□□□ -1.08
NUP88-202ENST00000570937 CTSOP43234 321 aaPredicted RBP8.32□□□□□ -1.08
NUP88-202ENST00000570937 OXLD1Q5BKU9 147 aa8.32□□□□□ -1.08
NUP88-202ENST00000570937 MAN1A2O60476 641 aa8.31□□□□□ -1.08
NUP88-202ENST00000570937 RNF144AP50876 292 aaPredicted RBP8.31□□□□□ -1.08
NUP88-202ENST00000570937 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.31□□□□□ -1.08
NUP88-202ENST00000570937 SOBPA7XYQ1 873 aa8.3□□□□□ -1.08
NUP88-202ENST00000570937 ATP9BO43861 1147 aa8.3□□□□□ -1.08
NUP88-202ENST00000570937 CLN3Q13286 438 aa8.3□□□□□ -1.08
NUP88-202ENST00000570937 EML3Q32P44 896 aa8.3□□□□□ -1.08
NUP88-202ENST00000570937 FOXD4L5Q5VV16 416 aaPredicted RBP8.3□□□□□ -1.08
NUP88-202ENST00000570937 TREML4Q6UXN2 200 aa8.3□□□□□ -1.08
NUP88-202ENST00000570937 PLEKHM2Q8IWE5 1019 aa8.3□□□□□ -1.08
NUP88-202ENST00000570937 RNF217Q8TC41 542 aa8.3□□□□□ -1.08
NUP88-202ENST00000570937 CALR3Q96L12 384 aaKnown RBP8.3□□□□□ -1.08
NUP88-202ENST00000570937 POLMQ9NP87 494 aaPredicted RBP8.3□□□□□ -1.08
NUP88-202ENST00000570937 USP17L5A8MUK1 530 aa8.29□□□□□ -1.08
NUP88-202ENST00000570937 NCOA4Q13772 614 aa8.29□□□□□ -1.08
NUP88-202ENST00000570937 LCE2AQ5TA79 106 aaPredicted RBP8.29□□□□□ -1.08
NUP88-202ENST00000570937 TBC1D9Q6ZT07 1266 aa8.29□□□□□ -1.08
NUP88-202ENST00000570937 NPAS3Q8IXF0 933 aa8.29□□□□□ -1.08
NUP88-202ENST00000570937 ARHGEF10LQ9HCE6 1279 aa8.29□□□□□ -1.08
NUP88-202ENST00000570937 XAGE2Q96GT9 111 aa8.28□□□□□ -1.08
NUP88-202ENST00000570937 ESYT1Q9BSJ8 1104 aa8.28□□□□□ -1.08
NUP88-202ENST00000570937 NXF1Q9UBU9 619 aaKnown RBP8.28□□□□□ -1.08
NUP88-202ENST00000570937 ZNF777Q9ULD5 760 aaPredicted RBP8.28□□□□□ -1.08
NUP88-202ENST00000570937 NOD1Q9Y239 953 aa8.28□□□□□ -1.08
NUP88-202ENST00000570937 HRH3Q9Y5N1 445 aa8.28□□□□□ -1.08
NUP88-202ENST00000570937 USP17L3A6NCW0 530 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 USP17L4A6NCW7 530 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 FIGNL2A6NMB9 653 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 MEN1O00255 615 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 IL2RAP01589 272 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 USP17L2Q6R6M4 530 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 USP17L1Q7RTZ2 530 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 NLRP3Q96P20 1036 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 PCDHGA11Q9Y5H2 935 aa8.27□□□□□ -1.09
NUP88-202ENST00000570937 WASLO00401 505 aaPredicted RBP8.26□□□□□ -1.09
NUP88-202ENST00000570937 TERTO14746 1132 aaKnown RBP8.26□□□□□ -1.09
NUP88-202ENST00000570937 ESCO1Q5FWF5 840 aa8.26□□□□□ -1.09
NUP88-202ENST00000570937 CNKSR1Q969H4 720 aa8.26□□□□□ -1.09
NUP88-202ENST00000570937 PPP1R12CQ9BZL4 782 aa8.26□□□□□ -1.09
NUP88-202ENST00000570937 GRIP2Q9C0E4 1043 aa8.26□□□□□ -1.09
NUP88-202ENST00000570937 ETNK1Q9HBU6 452 aa8.26□□□□□ -1.09
NUP88-202ENST00000570937 PALM3A6NDB9 673 aaPredicted RBP8.25□□□□□ -1.09
NUP88-202ENST00000570937 WFS1O76024 890 aa8.25□□□□□ -1.09
NUP88-202ENST00000570937 SCNN1DP51172 638 aa8.25□□□□□ -1.09
NUP88-202ENST00000570937 NFX1Q12986 1120 aaKnown RBP8.25□□□□□ -1.09
NUP88-202ENST00000570937 LYSMD3Q7Z3D4 306 aa8.25□□□□□ -1.09
NUP88-202ENST00000570937 DEPDC4Q8N2C3 294 aa8.25□□□□□ -1.09
NUP88-202ENST00000570937 RAB6BQ9NRW1 208 aa8.25□□□□□ -1.09
NUP88-202ENST00000570937 TFIP11Q9UBB9 837 aaKnown RBP8.25□□□□□ -1.09
NUP88-202ENST00000570937 MAFBQ9Y5Q3 323 aaPredicted RBP8.25□□□□□ -1.09
NUP88-202ENST00000570937 INHAP05111 366 aa8.24□□□□□ -1.09
NUP88-202ENST00000570937 PTSQ03393 145 aa8.24□□□□□ -1.09
NUP88-202ENST00000570937 TRIM50Q86XT4 487 aa8.24□□□□□ -1.09
NUP88-202ENST00000570937 SLC35F4A4IF30 521 aa8.23□□□□□ -1.09
NUP88-202ENST00000570937 SPATA31C2B4DYI2 1134 aa8.23□□□□□ -1.09
NUP88-202ENST00000570937 GDF10P55107 478 aa8.23□□□□□ -1.09
NUP88-202ENST00000570937 GTF2IP78347 998 aa8.23□□□□□ -1.09
NUP88-202ENST00000570937 CENPCQ03188 943 aa8.23□□□□□ -1.09
NUP88-202ENST00000570937 FHDC1Q9C0D6 1143 aaPredicted RBP8.23□□□□□ -1.09
NUP88-202ENST00000570937 TMEM229AB2RXF0 380 aa8.22□□□□□ -1.09
NUP88-202ENST00000570937 H3BM21 787 aa8.22□□□□□ -1.09
NUP88-202ENST00000570937 STAU1O95793 577 aaKnown RBP8.22□□□□□ -1.09
NUP88-202ENST00000570937 WDR44Q5JSH3 913 aa8.22□□□□□ -1.09
NUP88-202ENST00000570937 SLC27A3Q5K4L6 730 aa8.22□□□□□ -1.09
NUP88-202ENST00000570937 MKRN1Q9UHC7 482 aaKnown RBP8.22□□□□□ -1.09
NUP88-202ENST00000570937 SENP3-EIF4A1A0A087X0R7 540 aa8.21□□□□□ -1.1
NUP88-202ENST00000570937 ATP1A2P50993 1020 aa8.21□□□□□ -1.1
NUP88-202ENST00000570937 PRICKLE2Q7Z3G6 844 aa8.21□□□□□ -1.1
NUP88-202ENST00000570937 C14orf37Q86TY3 774 aa8.21□□□□□ -1.1
NUP88-202ENST00000570937 SLC4A9Q96Q91 983 aa8.21□□□□□ -1.1
NUP88-202ENST00000570937 ZBTB7BO15156 539 aaPredicted RBP8.2□□□□□ -1.1
NUP88-202ENST00000570937 PPFIA3O75145 1194 aa8.2□□□□□ -1.1
NUP88-202ENST00000570937 ERICH6Q7L0X2 663 aa8.2□□□□□ -1.1
NUP88-202ENST00000570937 CCDC155Q8N6L0 562 aa8.2□□□□□ -1.1
NUP88-202ENST00000570937 SLC16A10Q8TF71 515 aa8.2□□□□□ -1.1
NUP88-202ENST00000570937 ZSCAN10Q96SZ4 725 aaPredicted RBP8.2□□□□□ -1.1
NUP88-202ENST00000570937 CLDN10P78369 228 aa8.19□□□□□ -1.1
NUP88-202ENST00000570937 CFAP70Q5T0N1 1121 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms