RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 KIF21BO75037 1637 aa9.46□□□□□ -0.89
VPS35-204ENST00000563884 LINC00528Q8N1L1 170 aa9.46□□□□□ -0.9
VPS35-204ENST00000563884 ARHGAP9Q9BRR9 750 aa9.46□□□□□ -0.9
VPS35-204ENST00000563884 FHAD1B1AJZ9 1412 aa9.46□□□□□ -0.9
VPS35-204ENST00000563884 ERFEQ4G0M1 354 aa9.45□□□□□ -0.9
VPS35-204ENST00000563884 PDXDC2PQ6P474 469 aa9.45□□□□□ -0.9
VPS35-204ENST00000563884 CCDC116Q8IYX3 515 aa9.45□□□□□ -0.9
VPS35-204ENST00000563884 FKBPLQ9UIM3 349 aa9.45□□□□□ -0.9
VPS35-204ENST00000563884 EMILIN1Q9Y6C2 1016 aa9.45□□□□□ -0.9
VPS35-204ENST00000563884 PLB1Q6P1J6 1458 aa9.45□□□□□ -0.9
VPS35-204ENST00000563884 KIAA0586Q9BVV6 1533 aa9.45□□□□□ -0.9
VPS35-204ENST00000563884 AP1G2O75843 785 aa9.44□□□□□ -0.9
VPS35-204ENST00000563884 NR6A1Q15406 480 aa9.44□□□□□ -0.9
VPS35-204ENST00000563884 FBXO31Q5XUX0 539 aaPredicted RBP9.44□□□□□ -0.9
VPS35-204ENST00000563884 MEIOBQ8N635 442 aa9.44□□□□□ -0.9
VPS35-204ENST00000563884 CUL7Q14999 1698 aa9.44□□□□□ -0.9
VPS35-204ENST00000563884 ERBB4Q15303 1308 aa9.43□□□□□ -0.9
VPS35-204ENST00000563884 ZBTB33Q86T24 672 aa9.43□□□□□ -0.9
VPS35-204ENST00000563884 SLC10A4Q96EP9 437 aa9.43□□□□□ -0.9
VPS35-204ENST00000563884 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS35-204ENST00000563884 ERICH3Q5RHP9 1530 aa9.42□□□□□ -0.9
VPS35-204ENST00000563884 BRPF1P55201 1214 aaPredicted RBP9.42□□□□□ -0.9
VPS35-204ENST00000563884 PPP2R2DQ66LE6 453 aa9.42□□□□□ -0.9
VPS35-204ENST00000563884 TSEN34Q9BSV6 310 aaKnown RBP9.41□□□□□ -0.9
VPS35-204ENST00000563884 PGPEP1Q9NXJ5 209 aa9.41□□□□□ -0.9
VPS35-204ENST00000563884 ADAMTSL3P82987 1691 aa9.41□□□□□ -0.9
VPS35-204ENST00000563884 ZC3H4Q9UPT8 1303 aaKnown RBP9.4□□□□□ -0.9
VPS35-204ENST00000563884 FAM181BA6NEQ2 426 aa9.4□□□□□ -0.9
VPS35-204ENST00000563884 PTK2Q05397 1052 aa9.4□□□□□ -0.9
VPS35-204ENST00000563884 PPP1R26Q5T8A7 1209 aaPredicted RBP9.4□□□□□ -0.9
VPS35-204ENST00000563884 CDV3Q9UKY7 258 aaKnown RBP9.4□□□□□ -0.9
VPS35-204ENST00000563884 PRKCSHP14314 528 aaPredicted RBP9.39□□□□□ -0.91
VPS35-204ENST00000563884 NEUROD2Q15784 382 aa9.39□□□□□ -0.91
VPS35-204ENST00000563884 ZSCAN1Q8NBB4 408 aa9.39□□□□□ -0.91
VPS35-204ENST00000563884 KCTD15Q96SI1 283 aaPredicted RBP9.39□□□□□ -0.91
VPS35-204ENST00000563884 ABCC2Q92887 1545 aa9.39□□□□□ -0.91
VPS35-204ENST00000563884 PTPRMP28827 1452 aa9.39□□□□□ -0.91
VPS35-204ENST00000563884 SOS2Q07890 1332 aaPredicted RBP9.38□□□□□ -0.91
VPS35-204ENST00000563884 PNMA1Q8ND90 353 aa9.38□□□□□ -0.91
VPS35-204ENST00000563884 COL17A1Q9UMD9 1497 aaPredicted RBP9.38□□□□□ -0.91
VPS35-204ENST00000563884 ASXL2Q76L83 1435 aa9.38□□□□□ -0.91
VPS35-204ENST00000563884 DHX9Q08211 1270 aaKnown RBP9.37□□□□□ -0.91
VPS35-204ENST00000563884 CBLBQ13191 982 aa9.37□□□□□ -0.91
VPS35-204ENST00000563884 GOPCQ9HD26 462 aa9.37□□□□□ -0.91
VPS35-204ENST00000563884 DNMT3LQ9UJW3 386 aa9.37□□□□□ -0.91
VPS35-204ENST00000563884 ADAM32Q8TC27 787 aa9.36□□□□□ -0.91
VPS35-204ENST00000563884 EPS8L1Q8TE68 723 aa9.36□□□□□ -0.91
VPS35-204ENST00000563884 GPSM3Q9Y4H4 160 aa9.36□□□□□ -0.91
VPS35-204ENST00000563884 CFAP43Q8NDM7 1665 aa9.36□□□□□ -0.91
VPS35-204ENST00000563884 TTLL8A6PVC2 850 aa9.35□□□□□ -0.91
VPS35-204ENST00000563884 PPFIA3O75145 1194 aa9.35□□□□□ -0.91
VPS35-204ENST00000563884 USP17L8P0C7I0 530 aa9.35□□□□□ -0.91
VPS35-204ENST00000563884 BCORL1Q5H9F3 1711 aa9.34□□□□□ -0.91
VPS35-204ENST00000563884 FIGNL2A6NMB9 653 aa9.34□□□□□ -0.91
VPS35-204ENST00000563884 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.34□□□□□ -0.91
VPS35-204ENST00000563884 INTS6LQ5JSJ4 861 aaKnown RBP9.34□□□□□ -0.91
VPS35-204ENST00000563884 OCSTAMPQ9BR26 566 aa9.34□□□□□ -0.91
VPS35-204ENST00000563884 HMX1Q9NP08 348 aaPredicted RBP9.34□□□□□ -0.91
VPS35-204ENST00000563884 EPRSP07814 1512 aaKnown RBP9.33□□□□□ -0.92
VPS35-204ENST00000563884 VSIG8P0DPA2 414 aa9.33□□□□□ -0.92
VPS35-204ENST00000563884 RFC5P40937 340 aa9.33□□□□□ -0.92
VPS35-204ENST00000563884 RAB15P59190 212 aa9.33□□□□□ -0.92
VPS35-204ENST00000563884 Q6ZVU0 165 aa9.33□□□□□ -0.92
VPS35-204ENST00000563884 MADDQ8WXG6 1647 aa9.32□□□□□ -0.92
VPS35-204ENST00000563884 LORP23490 312 aaPredicted RBP9.32□□□□□ -0.92
VPS35-204ENST00000563884 NBPF20Q3BBV1 942 aa9.32□□□□□ -0.92
VPS35-204ENST00000563884 PCMTD1Q96MG8 357 aaPredicted RBP9.32□□□□□ -0.92
VPS35-204ENST00000563884 WRNQ14191 1432 aaPredicted RBP eCLIP9.31□□□□□ -0.92
VPS35-204ENST00000563884 SPINT1O43278 529 aa9.31□□□□□ -0.92
VPS35-204ENST00000563884 DZIP3Q86Y13 1208 aaKnown RBP9.31□□□□□ -0.92
VPS35-204ENST00000563884 AGBL1Q96MI9 1066 aa9.31□□□□□ -0.92
VPS35-204ENST00000563884 RIMS1Q86UR5 1692 aaKnown RBP9.31□□□□□ -0.92
VPS35-204ENST00000563884 UHRF1BP1LA0JNW5 1464 aa9.3□□□□□ -0.92
VPS35-204ENST00000563884 RELBQ01201 579 aa9.3□□□□□ -0.92
VPS35-204ENST00000563884 IL27Q8NEV9 243 aa9.3□□□□□ -0.92
VPS35-204ENST00000563884 ZCCHC11Q5TAX3 1644 aaKnown RBP9.3□□□□□ -0.92
VPS35-204ENST00000563884 PTSQ03393 145 aa9.29□□□□□ -0.92
VPS35-204ENST00000563884 TMPRSS4Q9NRS4 437 aa9.29□□□□□ -0.92
VPS35-204ENST00000563884 BIVM-ERCC5R4GMW8 1640 aa9.29□□□□□ -0.92
VPS35-204ENST00000563884 PTPRGP23470 1445 aa9.29□□□□□ -0.92
VPS35-204ENST00000563884 MAGI3Q5TCQ9 1506 aa9.27□□□□□ -0.93
VPS35-204ENST00000563884 TMEM259Q4ZIN3 620 aa9.27□□□□□ -0.93
VPS35-204ENST00000563884 ZNF395Q9H8N7 513 aaPredicted RBP9.27□□□□□ -0.93
VPS35-204ENST00000563884 POLMQ9NP87 494 aaPredicted RBP9.27□□□□□ -0.93
VPS35-204ENST00000563884 IQSEC2Q5JU85 1478 aa9.27□□□□□ -0.93
VPS35-204ENST00000563884 PREX1Q8TCU6 1659 aa9.26□□□□□ -0.93
VPS35-204ENST00000563884 CARMIL2Q6F5E8 1435 aa9.26□□□□□ -0.93
VPS35-204ENST00000563884 ZNF784Q8NCA9 323 aaPredicted RBP9.26□□□□□ -0.93
VPS35-204ENST00000563884 INSM2Q96T92 566 aaPredicted RBP9.26□□□□□ -0.93
VPS35-204ENST00000563884 ERVH48-1M5A8F1 160 aa9.25□□□□□ -0.93
VPS35-204ENST00000563884 CTSOP43234 321 aaPredicted RBP9.25□□□□□ -0.93
VPS35-204ENST00000563884 CCDC155Q8N6L0 562 aa9.25□□□□□ -0.93
VPS35-204ENST00000563884 TRIM34Q9BYJ4 488 aa9.24□□□□□ -0.93
VPS35-204ENST00000563884 KDM5BQ9UGL1 1544 aa9.24□□□□□ -0.93
VPS35-204ENST00000563884 TNIKQ9UKE5 1360 aa9.24□□□□□ -0.93
VPS35-204ENST00000563884 ADH1AP07327 375 aa9.23□□□□□ -0.93
VPS35-204ENST00000563884 WDR7Q9Y4E6 1490 aa9.22□□□□□ -0.93
VPS35-204ENST00000563884 ARAP3Q8WWN8 1544 aa9.22□□□□□ -0.93
VPS35-204ENST00000563884 GPR161Q8N6U8 529 aaKnown RBP9.22□□□□□ -0.93
VPS35-204ENST00000563884 CNTNAP3BQ96NU0 1288 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms