RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 PIBF1Q8WXW3 757 aa22.79■■□□□ 1.24
RAB40C-206ENST00000561781 OGFRQ9NZT2 677 aa22.79■■□□□ 1.24
RAB40C-206ENST00000561781 NPC1L1Q9UHC9 1359 aa22.79■■□□□ 1.24
RAB40C-206ENST00000561781 NEUROD2Q15784 382 aa22.79■■□□□ 1.24
RAB40C-206ENST00000561781 PROSER2Q86WR7 435 aaPredicted RBP22.79■■□□□ 1.24
RAB40C-206ENST00000561781 KIF2CQ99661 725 aa22.79■■□□□ 1.24
RAB40C-206ENST00000561781 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.79■■□□□ 1.24
RAB40C-206ENST00000561781 IGSF3O75054 1194 aa22.78■■□□□ 1.24
RAB40C-206ENST00000561781 LRSAM1Q6UWE0 723 aa22.78■■□□□ 1.24
RAB40C-206ENST00000561781 TMEM94Q12767 1356 aa22.77■■□□□ 1.24
RAB40C-206ENST00000561781 PIK3R4Q99570 1358 aa22.77■■□□□ 1.24
RAB40C-206ENST00000561781 NWD1Q149M9 1564 aa22.77■■□□□ 1.24
RAB40C-206ENST00000561781 ABCC11Q96J66 1382 aa22.76■■□□□ 1.23
RAB40C-206ENST00000561781 ANKRD7Q92527 254 aa22.76■■□□□ 1.23
RAB40C-206ENST00000561781 MINK1Q8N4C8 1332 aaPredicted RBP22.76■■□□□ 1.23
RAB40C-206ENST00000561781 NOLC1Q14978 699 aaKnown RBP eCLIP22.76■■□□□ 1.23
RAB40C-206ENST00000561781 TIGD1Q96MW7 591 aa22.76■■□□□ 1.23
RAB40C-206ENST00000561781 LMBRD1Q9NUN5 540 aa22.76■■□□□ 1.23
RAB40C-206ENST00000561781 LTBP4Q8N2S1 1624 aa22.76■■□□□ 1.23
RAB40C-206ENST00000561781 U2AF2P26368 475 aaKnown RBP eCLIP22.75■■□□□ 1.23
RAB40C-206ENST00000561781 MCTP1Q6DN14 999 aa22.75■■□□□ 1.23
RAB40C-206ENST00000561781 RRP7AQ9Y3A4 280 aaKnown RBP22.75■■□□□ 1.23
RAB40C-206ENST00000561781 ARHGEF28Q8N1W1 1705 aaKnown RBP22.75■■□□□ 1.23
RAB40C-206ENST00000561781 NUTM2FA1L443 756 aa22.74■■□□□ 1.23
RAB40C-206ENST00000561781 HDAC1Q13547 482 aaPredicted RBP22.74■■□□□ 1.23
RAB40C-206ENST00000561781 C14orf37Q86TY3 774 aa22.74■■□□□ 1.23
RAB40C-206ENST00000561781 GAS2L2Q8NHY3 880 aa22.74■■□□□ 1.23
RAB40C-206ENST00000561781 KLHL34Q8N239 644 aa22.74■■□□□ 1.23
RAB40C-206ENST00000561781 RGS22Q8NE09 1264 aa22.74■■□□□ 1.23
RAB40C-206ENST00000561781 LRRC7Q96NW7 1537 aa22.74■■□□□ 1.23
RAB40C-206ENST00000561781 MYOM1P52179 1685 aa22.73■■□□□ 1.23
RAB40C-206ENST00000561781 NUCB2P80303 420 aa22.73■■□□□ 1.23
RAB40C-206ENST00000561781 CDCA8Q53HL2 280 aa22.73■■□□□ 1.23
RAB40C-206ENST00000561781 TECPR2O15040 1411 aa22.73■■□□□ 1.23
RAB40C-206ENST00000561781 CPS1P31327 1500 aa22.73■■□□□ 1.23
RAB40C-206ENST00000561781 FKBP5Q13451 457 aaPredicted RBP22.72■■□□□ 1.23
RAB40C-206ENST00000561781 TSPYL1Q9H0U9 437 aa22.72■■□□□ 1.23
RAB40C-206ENST00000561781 PTCH1Q13635 1447 aa22.72■■□□□ 1.23
RAB40C-206ENST00000561781 DZIP1LQ8IYY4 767 aaKnown RBP22.71■■□□□ 1.23
RAB40C-206ENST00000561781 DIAPH3Q9NSV4 1193 aa22.71■■□□□ 1.23
RAB40C-206ENST00000561781 AK9Q5TCS8 1911 aa22.71■■□□□ 1.23
RAB40C-206ENST00000561781 RBM42Q9BTD8 480 aaKnown RBP22.71■■□□□ 1.23
RAB40C-206ENST00000561781 ZKSCAN2Q63HK3 967 aa22.7■■□□□ 1.22
RAB40C-206ENST00000561781 SPTLC3Q9NUV7 552 aa22.69■■□□□ 1.22
RAB40C-206ENST00000561781 KNDC1Q76NI1 1749 aa22.69■■□□□ 1.22
RAB40C-206ENST00000561781 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.69■■□□□ 1.22
RAB40C-206ENST00000561781 SLFN14P0C7P3 912 aa22.68■■□□□ 1.22
RAB40C-206ENST00000561781 CHAF1AQ13111 956 aaPredicted RBP22.68■■□□□ 1.22
RAB40C-206ENST00000561781 SECISBP2LQ93073 1101 aaKnown RBP22.68■■□□□ 1.22
RAB40C-206ENST00000561781 XIRP1Q702N8 1843 aaKnown RBP22.68■■□□□ 1.22
RAB40C-206ENST00000561781 FAM177BA6PVY3 158 aa22.68■■□□□ 1.22
RAB40C-206ENST00000561781 TULP2O00295 520 aa22.67■■□□□ 1.22
RAB40C-206ENST00000561781 BRD2P25440 801 aaKnown RBP22.67■■□□□ 1.22
RAB40C-206ENST00000561781 CALCOCO1Q9P1Z2 691 aa22.67■■□□□ 1.22
RAB40C-206ENST00000561781 NALCNQ8IZF0 1738 aa22.67■■□□□ 1.22
RAB40C-206ENST00000561781 KIF16BQ96L93 1317 aa22.67■■□□□ 1.22
RAB40C-206ENST00000561781 WDR63Q8IWG1 891 aa22.66■■□□□ 1.22
RAB40C-206ENST00000561781 TCP11L2Q8N4U5 519 aa22.66■■□□□ 1.22
RAB40C-206ENST00000561781 PHF23Q9BUL5 403 aaPredicted RBP22.66■■□□□ 1.22
RAB40C-206ENST00000561781 CHMP4AQ9BY43 222 aa22.66■■□□□ 1.22
RAB40C-206ENST00000561781 DLC1Q96QB1 1528 aa22.65■■□□□ 1.22
RAB40C-206ENST00000561781 CTIFO43310 598 aaKnown RBP22.65■■□□□ 1.22
RAB40C-206ENST00000561781 ZBTB7CA1YPR0 619 aa22.65■■□□□ 1.22
RAB40C-206ENST00000561781 RUNDC1Q96C34 613 aa22.65■■□□□ 1.22
RAB40C-206ENST00000561781 QRICH2Q9H0J4 1663 aa22.64■■□□□ 1.22
RAB40C-206ENST00000561781 FAM135BQ49AJ0 1406 aa22.64■■□□□ 1.22
RAB40C-206ENST00000561781 POLR3AO14802 1390 aaPredicted RBP22.64■■□□□ 1.22
RAB40C-206ENST00000561781 SYCE3A1L190 88 aa22.64■■□□□ 1.21
RAB40C-206ENST00000561781 LNPKQ9C0E8 428 aa22.64■■□□□ 1.21
RAB40C-206ENST00000561781 RBM27Q9P2N5 1060 aaKnown RBP22.64■■□□□ 1.21
RAB40C-206ENST00000561781 IQSEC2Q5JU85 1478 aa22.64■■□□□ 1.21
RAB40C-206ENST00000561781 GPT2Q8TD30 523 aa22.63■■□□□ 1.21
RAB40C-206ENST00000561781 CYP2E1P05181 493 aaPredicted RBP22.63■■□□□ 1.21
RAB40C-206ENST00000561781 ITPRIPQ8IWB1 547 aa22.63■■□□□ 1.21
RAB40C-206ENST00000561781 NUCB1Q02818 461 aa22.62■■□□□ 1.21
RAB40C-206ENST00000561781 MAPK8IP2Q13387 824 aaPredicted RBP22.62■■□□□ 1.21
RAB40C-206ENST00000561781 PRPF40AO75400 957 aaKnown RBP22.61■■□□□ 1.21
RAB40C-206ENST00000561781 DDX19BQ9UMR2 479 aa22.61■■□□□ 1.21
RAB40C-206ENST00000561781 TRIM27P14373 513 aa22.61■■□□□ 1.21
RAB40C-206ENST00000561781 FAM193AP78312 1265 aa22.61■■□□□ 1.21
RAB40C-206ENST00000561781 SYCP1Q15431 976 aa22.61■■□□□ 1.21
RAB40C-206ENST00000561781 TERF2Q15554 542 aa22.61■■□□□ 1.21
RAB40C-206ENST00000561781 BMP2KLQ5H9B9 411 aa22.61■■□□□ 1.21
RAB40C-206ENST00000561781 TMEM63CQ9P1W3 806 aa22.61■■□□□ 1.21
RAB40C-206ENST00000561781 SHPRHQ149N8 1683 aa22.6■■□□□ 1.21
RAB40C-206ENST00000561781 ADGRL3Q9HAR2 1447 aa22.6■■□□□ 1.21
RAB40C-206ENST00000561781 CABP2Q9NPB3 220 aa22.6■■□□□ 1.21
RAB40C-206ENST00000561781 RNF214Q8ND24 703 aa22.6■■□□□ 1.21
RAB40C-206ENST00000561781 RIOK3O14730 519 aaKnown RBP22.59■■□□□ 1.21
RAB40C-206ENST00000561781 MBD3O95983 291 aa22.59■■□□□ 1.21
RAB40C-206ENST00000561781 PKP1Q13835 747 aa22.59■■□□□ 1.21
RAB40C-206ENST00000561781 TSPY26PQ9H489 355 aa22.59■■□□□ 1.21
RAB40C-206ENST00000561781 CTNNA3Q9UI47 895 aa22.59■■□□□ 1.21
RAB40C-206ENST00000561781 TULP4Q9NRJ4 1543 aa22.59■■□□□ 1.21
RAB40C-206ENST00000561781 CERKQ8TCT0 537 aa22.58■■□□□ 1.21
RAB40C-206ENST00000561781 CARD14Q9BXL6 1004 aa22.58■■□□□ 1.21
RAB40C-206ENST00000561781 DDX41Q9UJV9 622 aaKnown RBP22.58■■□□□ 1.21
RAB40C-206ENST00000561781 CAPN2P17655 700 aa22.58■■□□□ 1.2
RAB40C-206ENST00000561781 CHD1LQ86WJ1 897 aa22.58■■□□□ 1.2
RAB40C-206ENST00000561781 TRIM6-TRIM34B2RNG4 842 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms