RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 FOXK1P85037 733 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 FILIP1Q7Z7B0 1213 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 RPUSD2Q8IZ73 545 aaKnown RBP8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 COL4A3BPQ9Y5P4 624 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 CEP170Q5SW79 1584 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 MYOM3Q5VTT5 1437 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 SEMA3FQ13275 785 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 PDCL3Q9H2J4 239 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 SH3BP5O60239 455 aa8.54□□□□□ -1.04
TSPAN3-209ENST00000560715 OS9Q13438 667 aaPredicted RBP8.54□□□□□ -1.04
TSPAN3-209ENST00000560715 MKNK1Q9BUB5 465 aa8.54□□□□□ -1.04
TSPAN3-209ENST00000560715 MAGI3Q5TCQ9 1506 aa8.54□□□□□ -1.04
TSPAN3-209ENST00000560715 C2orf72A6NCS6 295 aa8.54□□□□□ -1.04
TSPAN3-209ENST00000560715 GUCA2AQ02747 115 aa8.54□□□□□ -1.04
TSPAN3-209ENST00000560715 SCAMP3O14828 347 aaKnown RBP8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 LILRB3O75022 631 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 CHMP7Q8WUX9 453 aaPredicted RBP8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 IFT57Q9NWB7 429 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 NUP160Q12769 1436 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 RAPGEF6Q8TEU7 1601 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 USP17L3A6NCW0 530 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 USP17L4A6NCW7 530 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 MAFGO15525 162 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 KCNH2Q12809 1159 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 USP17L2Q6R6M4 530 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 USP17L1Q7RTZ2 530 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 PTPN23Q9H3S7 1636 aa8.53□□□□□ -1.04
TSPAN3-209ENST00000560715 SMG6Q86US8 1419 aaKnown RBP8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 GOLGA2Q08379 1002 aa8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 MRPL58Q14197 206 aaKnown RBP8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 FMNL3Q8IVF7 1028 aa8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 TMC2Q8TDI7 906 aa8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 L3MBTL3Q96JM7 780 aaPredicted RBP8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 RIMBP3CA6NJZ7 1639 aa8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 RIMBP3BA6NNM3 1639 aa8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 RIMBP3Q9UFD9 1639 aa8.52□□□□□ -1.05
TSPAN3-209ENST00000560715 HOXA2O43364 376 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 PTMSP20962 102 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 RGS3P49796 1198 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 L1TD1Q5T7N2 865 aaKnown RBP8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 GLYCTKQ8IVS8 523 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 SETDB2Q96T68 719 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 IRF2BPLQ9H1B7 796 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 METTL14Q9HCE5 456 aaKnown RBP8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 IBSPP21815 317 aaPredicted RBP8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 ZFYVE27Q5T4F4 411 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 NME8Q8N427 588 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 TMX4Q9H1E5 349 aaPredicted RBP8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 TCOF1Q13428 1488 aaKnown RBP8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 KIF4AO95239 1232 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 P4HBP07237 508 aaKnown RBP8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 RAVER1Q8IY67 606 aaKnown RBP8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 PXYLP1Q8TE99 480 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 SEPT3Q9UH03 358 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 TRPC6Q9Y210 931 aa8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 CDK13Q14004 1512 aaKnown RBP8.51□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L15C9J2P7 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L10C9JJH3 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L13C9JLJ4 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L12C9JPN9 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L11C9JVI0 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L21D6R901 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L18D6R9N7 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L22D6RA61 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L17D6RBQ6 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L19D6RCP7 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L20D6RJB6 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 USP17L24Q0WX57 530 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 ENOX2Q16206 610 aaKnown RBP8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 EAPPQ56P03 285 aaPredicted RBP8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 JDP2Q8WYK2 163 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 PRIMPOLQ96LW4 560 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 CCSER2Q9H7U1 834 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 PCDH12Q9NPG4 1184 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 FRAT2O75474 233 aaPredicted RBP8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 CBLBQ13191 982 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 PLEKHG6Q3KR16 790 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 ZNF394Q53GI3 561 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 TSR2Q969E8 191 aaKnown RBP8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 CARMIL2Q6F5E8 1435 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 AKNAQ7Z591 1439 aa8.5□□□□□ -1.05
TSPAN3-209ENST00000560715 TBX4P57082 545 aa8.49□□□□□ -1.05
TSPAN3-209ENST00000560715 PADI6Q6TGC4 694 aa8.49□□□□□ -1.05
TSPAN3-209ENST00000560715 MIA2Q96PC5 1412 aa8.49□□□□□ -1.05
TSPAN3-209ENST00000560715 NUP153P49790 1475 aaKnown RBP8.49□□□□□ -1.05
TSPAN3-209ENST00000560715 RASA1P20936 1047 aa8.49□□□□□ -1.05
TSPAN3-209ENST00000560715 HFM1A2PYH4 1435 aa8.49□□□□□ -1.05
TSPAN3-209ENST00000560715 TPM2P07951 284 aa8.48□□□□□ -1.05
TSPAN3-209ENST00000560715 FANCCQ00597 558 aa8.48□□□□□ -1.05
TSPAN3-209ENST00000560715 SPTLC1O15269 473 aa8.48□□□□□ -1.05
TSPAN3-209ENST00000560715 FAM174AQ8TBP5 190 aa8.48□□□□□ -1.05
TSPAN3-209ENST00000560715 MKRN1Q9UHC7 482 aaKnown RBP8.48□□□□□ -1.05
TSPAN3-209ENST00000560715 PTPRKQ15262 1439 aa8.47□□□□□ -1.05
TSPAN3-209ENST00000560715 CCDC85CA6NKD9 419 aa8.47□□□□□ -1.05
TSPAN3-209ENST00000560715 SKIP12755 728 aa8.47□□□□□ -1.05
TSPAN3-209ENST00000560715 SETQ01105 290 aaPredicted RBP8.47□□□□□ -1.05
TSPAN3-209ENST00000560715 NR6A1Q15406 480 aa8.47□□□□□ -1.05
TSPAN3-209ENST00000560715 JPH4Q96JJ6 628 aa8.47□□□□□ -1.05
TSPAN3-209ENST00000560715 CUEDC1Q9NWM3 386 aaPredicted RBP8.47□□□□□ -1.05
TSPAN3-209ENST00000560715 CCDC189A1A4V9 331 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms