RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 NBPF4Q96M43 638 aa11.54□□□□□ -0.56
TPM1-213ENST00000558400 MYOM1P52179 1685 aa11.54□□□□□ -0.56
TPM1-213ENST00000558400 APBA3O96018 575 aa11.53□□□□□ -0.56
TPM1-213ENST00000558400 MARCH10Q8NA82 808 aaPredicted RBP11.53□□□□□ -0.56
TPM1-213ENST00000558400 BCL9O00512 1426 aa11.52□□□□□ -0.56
TPM1-213ENST00000558400 TATP17735 454 aaPredicted RBP11.52□□□□□ -0.57
TPM1-213ENST00000558400 ZCRB1Q8TBF4 217 aaKnown RBP11.52□□□□□ -0.57
TPM1-213ENST00000558400 CAMKK2Q96RR4 588 aa11.52□□□□□ -0.57
TPM1-213ENST00000558400 BCL11BQ9C0K0 894 aaPredicted RBP11.52□□□□□ -0.57
TPM1-213ENST00000558400 PPP1R1BQ9UD71 204 aaPredicted RBP11.52□□□□□ -0.57
TPM1-213ENST00000558400 NPC1L1Q9UHC9 1359 aa11.52□□□□□ -0.57
TPM1-213ENST00000558400 OVOS2A0A0G2JMS6 1433 aa11.52□□□□□ -0.57
TPM1-213ENST00000558400 LTN1O94822 1766 aa11.51□□□□□ -0.57
TPM1-213ENST00000558400 CASZ1Q86V15 1759 aa11.51□□□□□ -0.57
TPM1-213ENST00000558400 RGPD5Q99666 1765 aa11.51□□□□□ -0.57
TPM1-213ENST00000558400 PLSCR1O15162 318 aa11.5□□□□□ -0.57
TPM1-213ENST00000558400 C1QTNF8P60827 252 aa11.5□□□□□ -0.57
TPM1-213ENST00000558400 DDX54Q8TDD1 881 aaKnown RBP11.5□□□□□ -0.57
TPM1-213ENST00000558400 SPON1Q9HCB6 807 aa11.5□□□□□ -0.57
TPM1-213ENST00000558400 RGPD3A6NKT7 1758 aaPredicted RBP11.49□□□□□ -0.57
TPM1-213ENST00000558400 RGPD4Q7Z3J3 1758 aa11.49□□□□□ -0.57
TPM1-213ENST00000558400 KIF20BQ96Q89 1820 aa11.49□□□□□ -0.57
TPM1-213ENST00000558400 CC2D1BQ5T0F9 858 aaKnown RBP11.49□□□□□ -0.57
TPM1-213ENST00000558400 EYA1Q99502 592 aa11.49□□□□□ -0.57
TPM1-213ENST00000558400 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.49□□□□□ -0.572e-10■■□□□ 13.7
TPM1-213ENST00000558400 PARP4Q9UKK3 1724 aaKnown RBP11.49□□□□□ -0.57
TPM1-213ENST00000558400 MTHFSP49914 203 aa11.48□□□□□ -0.57
TPM1-213ENST00000558400 EIF4A2Q14240 407 aaKnown RBP11.48□□□□□ -0.57
TPM1-213ENST00000558400 SPG7Q9UQ90 795 aa11.48□□□□□ -0.57
TPM1-213ENST00000558400 TNS2Q63HR2 1409 aa11.48□□□□□ -0.57
TPM1-213ENST00000558400 KCNQ2O43526 872 aa11.47□□□□□ -0.57
TPM1-213ENST00000558400 USHBP1Q8N6Y0 703 aa11.47□□□□□ -0.57
TPM1-213ENST00000558400 HMGB2P26583 209 aaKnown RBP11.46□□□□□ -0.57
TPM1-213ENST00000558400 NBPF14Q5TI25 921 aa11.46□□□□□ -0.57
TPM1-213ENST00000558400 SPINK5Q9NQ38 1064 aaPredicted RBP11.46□□□□□ -0.57
TPM1-213ENST00000558400 FAM208AQ9UK61 1670 aaKnown RBP11.46□□□□□ -0.58
TPM1-213ENST00000558400 PCDH11XQ9BZA7 1347 aa11.45□□□□□ -0.58
TPM1-213ENST00000558400 PCDH11YQ9BZA8 1340 aa11.45□□□□□ -0.58
TPM1-213ENST00000558400 MAP2P11137 1827 aaKnown RBP11.44□□□□□ -0.58
TPM1-213ENST00000558400 PLEKHG2Q9H7P9 1386 aa11.44□□□□□ -0.58
TPM1-213ENST00000558400 AMOTQ4VCS5 1084 aa11.44□□□□□ -0.58
TPM1-213ENST00000558400 PLEKHO1Q53GL0 409 aaPredicted RBP11.44□□□□□ -0.58
TPM1-213ENST00000558400 ACSBG1Q96GR2 724 aa11.44□□□□□ -0.58
TPM1-213ENST00000558400 IGSF1Q8N6C5 1336 aa11.43□□□□□ -0.58
TPM1-213ENST00000558400 DIAPH1O60610 1272 aaKnown RBP11.43□□□□□ -0.58
TPM1-213ENST00000558400 IL13P35225 146 aa11.43□□□□□ -0.58
TPM1-213ENST00000558400 PRIM1P49642 420 aaKnown RBP11.43□□□□□ -0.58
TPM1-213ENST00000558400 IFNL2Q8IZJ0 200 aa11.43□□□□□ -0.58
TPM1-213ENST00000558400 CFAP53Q96M91 514 aa11.43□□□□□ -0.58
TPM1-213ENST00000558400 LRRC37A3O60309 1634 aa11.42□□□□□ -0.58
TPM1-213ENST00000558400 SBF2Q86WG5 1849 aa11.42□□□□□ -0.58
TPM1-213ENST00000558400 UTRNP46939 3433 aa11.42□□□□□ -0.58
TPM1-213ENST00000558400 CNGB1Q14028 1251 aaPredicted RBP11.42□□□□□ -0.58
TPM1-213ENST00000558400 NKX1-1Q15270 411 aaPredicted RBP11.42□□□□□ -0.58
TPM1-213ENST00000558400 SYTL4Q96C24 671 aaPredicted RBP11.42□□□□□ -0.58
TPM1-213ENST00000558400 PEAK1Q9H792 1746 aa11.42□□□□□ -0.58
TPM1-213ENST00000558400 NCAPD2Q15021 1401 aa11.42□□□□□ -0.58
TPM1-213ENST00000558400 MEGF6O75095 1541 aa11.41□□□□□ -0.58
TPM1-213ENST00000558400 ANKRD26Q9UPS8 1709 aa11.41□□□□□ -0.58
TPM1-213ENST00000558400 CYP27B1O15528 508 aa11.41□□□□□ -0.58
TPM1-213ENST00000558400 HSP90AB1P08238 724 aaKnown RBP11.41□□□□□ -0.58
TPM1-213ENST00000558400 SULT6B1Q6IMI4 303 aa11.41□□□□□ -0.58
TPM1-213ENST00000558400 PTF1AQ7RTS3 328 aa11.41□□□□□ -0.58
TPM1-213ENST00000558400 NUDCQ9Y266 331 aa11.41□□□□□ -0.58
TPM1-213ENST00000558400 TXNRD1Q16881 649 aa11.4□□□□□ -0.58
TPM1-213ENST00000558400 PROM2Q8N271 834 aa11.4□□□□□ -0.58
TPM1-213ENST00000558400 DDX10Q13206 875 aaKnown RBP11.39□□□□□ -0.59
TPM1-213ENST00000558400 SLC27A3Q5K4L6 730 aa11.39□□□□□ -0.59
TPM1-213ENST00000558400 WNK3Q9BYP7 1800 aa11.38□□□□□ -0.59
TPM1-213ENST00000558400 PHKG2P15735 406 aa11.38□□□□□ -0.59
TPM1-213ENST00000558400 PPP2R1AP30153 589 aa11.38□□□□□ -0.59
TPM1-213ENST00000558400 RALBP1Q15311 655 aa11.38□□□□□ -0.59
TPM1-213ENST00000558400 C1orf141Q5JVX7 400 aa11.38□□□□□ -0.59
TPM1-213ENST00000558400 SMARCC1Q92922 1105 aaPredicted RBP11.38□□□□□ -0.59
TPM1-213ENST00000558400 DCAF5Q96JK2 942 aa11.38□□□□□ -0.59
TPM1-213ENST00000558400 KAT6BQ8WYB5 2073 aa11.38□□□□□ -0.59
TPM1-213ENST00000558400 ERVV-2B6SEH9 535 aa11.37□□□□□ -0.59
TPM1-213ENST00000558400 GIGYF1O75420 1035 aaPredicted RBP11.37□□□□□ -0.59
TPM1-213ENST00000558400 MPRIPQ6WCQ1 1025 aa11.37□□□□□ -0.59
TPM1-213ENST00000558400 KDRP35968 1356 aa11.37□□□□□ -0.59
TPM1-213ENST00000558400 SHANK3Q9BYB0 1731 aa11.37□□□□□ -0.59
TPM1-213ENST00000558400 RGPD2P0DJD1 1756 aa11.36□□□□□ -0.59
TPM1-213ENST00000558400 CEP350Q5VT06 3117 aa11.36□□□□□ -0.59
TPM1-213ENST00000558400 U2SURPO15042 1029 aaKnown RBP11.36□□□□□ -0.59
TPM1-213ENST00000558400 ZNF530Q6P9A1 599 aaPredicted RBP11.36□□□□□ -0.59
TPM1-213ENST00000558400 AEBP1Q8IUX7 1158 aa11.36□□□□□ -0.59
TPM1-213ENST00000558400 STK32BQ9NY57 414 aa11.36□□□□□ -0.59
TPM1-213ENST00000558400 CAPN15O75808 1086 aa11.35□□□□□ -0.59
TPM1-213ENST00000558400 HMOX1P09601 288 aa11.35□□□□□ -0.59
TPM1-213ENST00000558400 TMOD3Q9NYL9 352 aa11.35□□□□□ -0.59
TPM1-213ENST00000558400 FCHSD2O94868 740 aa11.34□□□□□ -0.59
TPM1-213ENST00000558400 SLC15A2Q16348 729 aa11.34□□□□□ -0.59
TPM1-213ENST00000558400 AKAP4Q5JQC9 854 aa11.34□□□□□ -0.59
TPM1-213ENST00000558400 PIGBQ92521 554 aa11.34□□□□□ -0.59
TPM1-213ENST00000558400 ANO8Q9HCE9 1232 aaPredicted RBP11.34□□□□□ -0.59
TPM1-213ENST00000558400 DSG3P32926 999 aa11.33□□□□□ -0.6
TPM1-213ENST00000558400 PTGER2P43116 358 aa11.33□□□□□ -0.6
TPM1-213ENST00000558400 CABP4P57796 275 aa11.33□□□□□ -0.6
TPM1-213ENST00000558400 SYT17Q9BSW7 474 aa11.33□□□□□ -0.6
TPM1-213ENST00000558400 PNNQ9H307 717 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms