RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PNMA1Q8ND90 353 aa9.35□□□□□ -0.91
SCFD1-218ENST00000556256 CYLDQ9NQC7 956 aa9.35□□□□□ -0.91
SCFD1-218ENST00000556256 ZNF837Q96EG3 531 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-218ENST00000556256 ENAMQ9NRM1 1142 aa9.34□□□□□ -0.91
SCFD1-218ENST00000556256 DBN1Q16643 649 aa9.33□□□□□ -0.92
SCFD1-218ENST00000556256 TRIM22Q8IYM9 498 aa9.33□□□□□ -0.92
SCFD1-218ENST00000556256 FAM117AQ9C073 453 aa9.33□□□□□ -0.92
SCFD1-218ENST00000556256 GPR25O00155 361 aa9.32□□□□□ -0.92
SCFD1-218ENST00000556256 USP17L8P0C7I0 530 aa9.32□□□□□ -0.92
SCFD1-218ENST00000556256 SEPT12Q8IYM1 358 aa9.32□□□□□ -0.92
SCFD1-218ENST00000556256 GMCL1Q96IK5 515 aa9.32□□□□□ -0.92
SCFD1-218ENST00000556256 MBIPQ9NS73 344 aa9.32□□□□□ -0.92
SCFD1-218ENST00000556256 CNTNAP5Q8WYK1 1306 aa9.31□□□□□ -0.92
SCFD1-218ENST00000556256 KDM4CQ9H3R0 1056 aa9.31□□□□□ -0.92
SCFD1-218ENST00000556256 GPBP1L1Q9HC44 474 aaPredicted RBP9.31□□□□□ -0.92
SCFD1-218ENST00000556256 IGF1RP08069 1367 aa9.3□□□□□ -0.92
SCFD1-218ENST00000556256 FOXR1Q6PIV2 292 aa9.3□□□□□ -0.92
SCFD1-218ENST00000556256 RIPOR1Q6ZS17 1223 aa9.3□□□□□ -0.92
SCFD1-218ENST00000556256 ATP5J2-PTCD1G3V325 749 aa9.29□□□□□ -0.92
SCFD1-218ENST00000556256 DDRGK1Q96HY6 314 aa9.29□□□□□ -0.92
SCFD1-218ENST00000556256 DCAF5Q96JK2 942 aa9.29□□□□□ -0.92
SCFD1-218ENST00000556256 A0A1W2PRU2 124 aa9.28□□□□□ -0.92
SCFD1-218ENST00000556256 PHF20L1A8MW92 1017 aa9.28□□□□□ -0.92
SCFD1-218ENST00000556256 MEN1O00255 615 aa9.28□□□□□ -0.92
SCFD1-218ENST00000556256 GIGYF1O75420 1035 aaPredicted RBP9.28□□□□□ -0.92
SCFD1-218ENST00000556256 BCRP11274 1271 aa9.28□□□□□ -0.92
SCFD1-218ENST00000556256 GPC1P35052 558 aa9.28□□□□□ -0.92
SCFD1-218ENST00000556256 PLA2G4EQ3MJ16 856 aa9.28□□□□□ -0.92
SCFD1-218ENST00000556256 BEND7Q8N7W2 519 aaPredicted RBP9.28□□□□□ -0.92
SCFD1-218ENST00000556256 MSTNO14793 375 aa9.27□□□□□ -0.93
SCFD1-218ENST00000556256 POU4F2Q12837 409 aa9.27□□□□□ -0.93
SCFD1-218ENST00000556256 GTPBP3Q969Y2 492 aaKnown RBP9.27□□□□□ -0.93
SCFD1-218ENST00000556256 TRIM52Q96A61 297 aa9.27□□□□□ -0.93
SCFD1-218ENST00000556256 ACDQ96AP0 544 aa9.27□□□□□ -0.93
SCFD1-218ENST00000556256 TRIM34Q9BYJ4 488 aa9.27□□□□□ -0.93
SCFD1-218ENST00000556256 DYRK1BQ9Y463 629 aa9.27□□□□□ -0.93
SCFD1-218ENST00000556256 ITGB2P05107 769 aa9.26□□□□□ -0.93
SCFD1-218ENST00000556256 NEDD1Q8NHV4 660 aa9.26□□□□□ -0.93
SCFD1-218ENST00000556256 GAS2L1Q99501 681 aaPredicted RBP9.26□□□□□ -0.93
SCFD1-218ENST00000556256 RFC5P40937 340 aa9.25□□□□□ -0.93
SCFD1-218ENST00000556256 SPOCK3Q9BQ16 436 aa9.25□□□□□ -0.93
SCFD1-218ENST00000556256 H7C1W4 665 aa9.24□□□□□ -0.93
SCFD1-218ENST00000556256 PCDHB9Q9Y5E1 797 aa9.24□□□□□ -0.93
SCFD1-218ENST00000556256 ZBBXA8MT70 800 aa9.23□□□□□ -0.93
SCFD1-218ENST00000556256 ERVK-9P63128 1117 aa9.23□□□□□ -0.93
SCFD1-218ENST00000556256 SLC27A3Q5K4L6 730 aa9.23□□□□□ -0.93
SCFD1-218ENST00000556256 PODNQ7Z5L7 613 aa9.23□□□□□ -0.93
SCFD1-218ENST00000556256 GRIP2Q9C0E4 1043 aa9.23□□□□□ -0.93
SCFD1-218ENST00000556256 ADAM23O75077 832 aa9.22□□□□□ -0.93
SCFD1-218ENST00000556256 NBPF10Q6P3W6 841 aaKnown RBP9.22□□□□□ -0.93
SCFD1-218ENST00000556256 NBPF15Q8N660 670 aa9.22□□□□□ -0.93
SCFD1-218ENST00000556256 NLRP3Q96P20 1036 aa9.22□□□□□ -0.93
SCFD1-218ENST00000556256 TRERF1Q96PN7 1200 aa9.22□□□□□ -0.93
SCFD1-218ENST00000556256 FBXO45P0C2W1 286 aa9.21□□□□□ -0.94
SCFD1-218ENST00000556256 MX2P20592 715 aa9.21□□□□□ -0.94
SCFD1-218ENST00000556256 CC2D2BQ6DHV5 1058 aa9.21□□□□□ -0.94
SCFD1-218ENST00000556256 LRRC4BQ9NT99 713 aa9.21□□□□□ -0.94
SCFD1-218ENST00000556256 PROCP04070 461 aa9.2□□□□□ -0.94
SCFD1-218ENST00000556256 CLN3Q13286 438 aa9.2□□□□□ -0.94
SCFD1-218ENST00000556256 CCDC125Q86Z20 511 aa9.2□□□□□ -0.94
SCFD1-218ENST00000556256 SPATA31C2B4DYI2 1134 aa9.19□□□□□ -0.94
SCFD1-218ENST00000556256 OIP5O43482 229 aa9.19□□□□□ -0.94
SCFD1-218ENST00000556256 SCTRP47872 440 aa9.19□□□□□ -0.94
SCFD1-218ENST00000556256 WDR44Q5JSH3 913 aa9.19□□□□□ -0.94
SCFD1-218ENST00000556256 XP32Q5T750 250 aa9.19□□□□□ -0.94
SCFD1-218ENST00000556256 F11P03951 625 aa9.18□□□□□ -0.94
SCFD1-218ENST00000556256 TMEM259Q4ZIN3 620 aa9.18□□□□□ -0.94
SCFD1-218ENST00000556256 RNF20Q5VTR2 975 aa9.18□□□□□ -0.94
SCFD1-218ENST00000556256 TIMMDC1Q9NPL8 285 aa9.18□□□□□ -0.94
SCFD1-218ENST00000556256 NSFL1CQ9UNZ2 370 aaKnown RBP9.18□□□□□ -0.94
SCFD1-218ENST00000556256 NUCKS1Q9H1E3 243 aaKnown RBP9.17□□□□□ -0.94
SCFD1-218ENST00000556256 SNRPNP63162 240 aaKnown RBP9.16□□□□□ -0.94
SCFD1-218ENST00000556256 TAS1R3Q7RTX0 852 aa9.16□□□□□ -0.94
SCFD1-218ENST00000556256 CYP2U1Q7Z449 544 aa9.16□□□□□ -0.94
SCFD1-218ENST00000556256 GJD4Q96KN9 370 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-218ENST00000556256 OXCT2Q9BYC2 517 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-218ENST00000556256 TRAK2O60296 914 aa9.15□□□□□ -0.94
SCFD1-218ENST00000556256 GALNT6Q8NCL4 622 aa9.15□□□□□ -0.94
SCFD1-218ENST00000556256 OSBPL3Q9H4L5 887 aa9.15□□□□□ -0.94
SCFD1-218ENST00000556256 ARHGEF10LQ9HCE6 1279 aa9.15□□□□□ -0.94
SCFD1-218ENST00000556256 WASLO00401 505 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-218ENST00000556256 THBS1P07996 1170 aa9.14□□□□□ -0.95
SCFD1-218ENST00000556256 CFHR5Q9BXR6 569 aa9.14□□□□□ -0.95
SCFD1-218ENST00000556256 PCDHB11Q9Y5F2 797 aa9.14□□□□□ -0.95
SCFD1-218ENST00000556256 MAP2K3P46734 347 aa9.13□□□□□ -0.95
SCFD1-218ENST00000556256 KRBA1A5PL33 1030 aa9.12□□□□□ -0.95
SCFD1-218ENST00000556256 SHISA8B8ZZ34 492 aa9.12□□□□□ -0.95
SCFD1-218ENST00000556256 MCCD1P59942 119 aaPredicted RBP9.12□□□□□ -0.95
SCFD1-218ENST00000556256 C1orf229Q6ZS94 237 aaPredicted RBP9.12□□□□□ -0.95
SCFD1-218ENST00000556256 KLRG1Q96E93 195 aa9.12□□□□□ -0.95
SCFD1-218ENST00000556256 ESF1Q9H501 851 aaKnown RBP9.12□□□□□ -0.95
SCFD1-218ENST00000556256 GOPCQ9HD26 462 aa9.12□□□□□ -0.95
SCFD1-218ENST00000556256 RAB6BQ9NRW1 208 aa9.12□□□□□ -0.95
SCFD1-218ENST00000556256 CENPCQ03188 943 aa9.11□□□□□ -0.95
SCFD1-218ENST00000556256 NR1H3Q13133 447 aa9.11□□□□□ -0.95
SCFD1-218ENST00000556256 CNKSR1Q969H4 720 aa9.11□□□□□ -0.95
SCFD1-218ENST00000556256 PCMTD1Q96MG8 357 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-218ENST00000556256 GPAMQ9HCL2 828 aa9.11□□□□□ -0.95
SCFD1-218ENST00000556256 GNRH1P01148 92 aa9.1□□□□□ -0.95
SCFD1-218ENST00000556256 PHKA2P46019 1235 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms