RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 BARGINQ6ZT62 677 aa13.2□□□□□ -0.3
PSEN1-213ENST00000555386 DDB1Q16531 1140 aa13.19□□□□□ -0.3
PSEN1-213ENST00000555386 KRT27Q7Z3Y8 459 aa13.19□□□□□ -0.3
PSEN1-213ENST00000555386 RAPGEF4Q8WZA2 1011 aa13.19□□□□□ -0.3
PSEN1-213ENST00000555386 PRKRIP1Q9H875 184 aaPredicted RBP13.19□□□□□ -0.3
PSEN1-213ENST00000555386 THSD7AQ9UPZ6 1657 aa13.19□□□□□ -0.3
PSEN1-213ENST00000555386 ONECUT3O60422 494 aaPredicted RBP13.18□□□□□ -0.3
PSEN1-213ENST00000555386 HMOX1P09601 288 aa13.18□□□□□ -0.3
PSEN1-213ENST00000555386 IL13P35225 146 aa13.18□□□□□ -0.3
PSEN1-213ENST00000555386 AEBP1Q8IUX7 1158 aa13.18□□□□□ -0.3
PSEN1-213ENST00000555386 EXOC5O00471 708 aa13.17□□□□□ -0.3
PSEN1-213ENST00000555386 TATP17735 454 aaPredicted RBP13.17□□□□□ -0.3
PSEN1-213ENST00000555386 SULT6B1Q6IMI4 303 aa13.17□□□□□ -0.3
PSEN1-213ENST00000555386 DDX54Q8TDD1 881 aaKnown RBP13.17□□□□□ -0.3
PSEN1-213ENST00000555386 PARP4Q9UKK3 1724 aaKnown RBP13.17□□□□□ -0.3
PSEN1-213ENST00000555386 MEGF6O75095 1541 aa13.17□□□□□ -0.3
PSEN1-213ENST00000555386 MYBBP1AQ9BQG0 1328 aaKnown RBP13.17□□□□□ -0.3
PSEN1-213ENST00000555386 LRRC37A3O60309 1634 aa13.16□□□□□ -0.3
PSEN1-213ENST00000555386 CDCA7Q9BWT1 371 aaPredicted RBP13.16□□□□□ -0.3
PSEN1-213ENST00000555386 DISP2A7MBM2 1401 aa13.15□□□□□ -0.3
PSEN1-213ENST00000555386 COL3A1P02461 1466 aaPredicted RBP13.14□□□□□ -0.31
PSEN1-213ENST00000555386 IGSF1Q8N6C5 1336 aa13.14□□□□□ -0.31
PSEN1-213ENST00000555386 U2AF1L5P0DN76 240 aaPredicted RBP13.14□□□□□ -0.31
PSEN1-213ENST00000555386 U2AF1Q01081 240 aaKnown RBP eCLIP13.14□□□□□ -0.31
PSEN1-213ENST00000555386 ZCRB1Q8TBF4 217 aaKnown RBP13.14□□□□□ -0.31
PSEN1-213ENST00000555386 NUDCQ9Y266 331 aa13.14□□□□□ -0.31
PSEN1-213ENST00000555386 MARCH10Q8NA82 808 aaPredicted RBP13.13□□□□□ -0.31
PSEN1-213ENST00000555386 RGPD1P0DJD0 1748 aa13.13□□□□□ -0.31
PSEN1-213ENST00000555386 TNS2Q63HR2 1409 aa13.12□□□□□ -0.31
PSEN1-213ENST00000555386 SUPT16HQ9Y5B9 1047 aaKnown RBP13.12□□□□□ -0.31
PSEN1-213ENST00000555386 OVOS2A0A0G2JMS6 1433 aa13.12□□□□□ -0.31
PSEN1-213ENST00000555386 ACSBG1Q96GR2 724 aa13.11□□□□□ -0.31
PSEN1-213ENST00000555386 SHANK3Q9BYB0 1731 aa13.1□□□□□ -0.31
PSEN1-213ENST00000555386 TRIM37O94972 964 aa13.1□□□□□ -0.31
PSEN1-213ENST00000555386 CCDC184Q52MB2 194 aa13.1□□□□□ -0.31
PSEN1-213ENST00000555386 FAM196AQ6ZSG2 479 aa13.1□□□□□ -0.31
PSEN1-213ENST00000555386 RTN4Q9NQC3 1192 aaKnown RBP13.1□□□□□ -0.31
PSEN1-213ENST00000555386 SPG7Q9UQ90 795 aa13.1□□□□□ -0.31
PSEN1-213ENST00000555386 NCAPD2Q15021 1401 aa13.09□□□□□ -0.31
PSEN1-213ENST00000555386 PRKAR2BP31323 418 aa13.09□□□□□ -0.31
PSEN1-213ENST00000555386 WDR43Q15061 677 aaKnown RBP eCLIP13.09□□□□□ -0.31
PSEN1-213ENST00000555386 PLEKHO1Q53GL0 409 aaPredicted RBP13.09□□□□□ -0.31
PSEN1-213ENST00000555386 ZNF530Q6P9A1 599 aaPredicted RBP13.09□□□□□ -0.31
PSEN1-213ENST00000555386 SBF2Q86WG5 1849 aa13.08□□□□□ -0.32
PSEN1-213ENST00000555386 PKD1L3Q7Z443 1732 aa13.08□□□□□ -0.32
PSEN1-213ENST00000555386 SYTL4Q96C24 671 aaPredicted RBP13.08□□□□□ -0.32
PSEN1-213ENST00000555386 PCDH11XQ9BZA7 1347 aa13.08□□□□□ -0.32
PSEN1-213ENST00000555386 PCDH11YQ9BZA8 1340 aa13.08□□□□□ -0.32
PSEN1-213ENST00000555386 CYP27B1O15528 508 aa13.07□□□□□ -0.32
PSEN1-213ENST00000555386 UPF1Q92900 1129 aaKnown RBP eCLIP13.07□□□□□ -0.32
PSEN1-213ENST00000555386 MRS2Q9HD23 443 aa13.07□□□□□ -0.32
PSEN1-213ENST00000555386 KDRP35968 1356 aa13.07□□□□□ -0.32
PSEN1-213ENST00000555386 SOCS7O14512 581 aa13.06□□□□□ -0.32
PSEN1-213ENST00000555386 KCNQ2O43526 872 aa13.06□□□□□ -0.32
PSEN1-213ENST00000555386 SF3B2Q13435 895 aaKnown RBP13.06□□□□□ -0.32
PSEN1-213ENST00000555386 PTF1AQ7RTS3 328 aa13.06□□□□□ -0.32
PSEN1-213ENST00000555386 RSPH6AQ9H0K4 717 aa13.06□□□□□ -0.32
PSEN1-213ENST00000555386 DOT1LQ8TEK3 1739 aa13.05□□□□□ -0.32
PSEN1-213ENST00000555386 C1orf141Q5JVX7 400 aa13.05□□□□□ -0.32
PSEN1-213ENST00000555386 CCDC146Q8IYE0 955 aa13.05□□□□□ -0.32
PSEN1-213ENST00000555386 PHACTR3Q96KR7 559 aa13.05□□□□□ -0.32
PSEN1-213ENST00000555386 SENP3-EIF4A1A0A087X0R7 540 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 PHKG2P15735 406 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 MTHFSDQ2M296 383 aaKnown RBP13.04□□□□□ -0.32
PSEN1-213ENST00000555386 AMOTQ4VCS5 1084 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 IFNL2Q8IZJ0 200 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 VIRMAQ69YN4 1812 aaKnown RBP13.04□□□□□ -0.32
PSEN1-213ENST00000555386 FCHSD2O94868 740 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 APBA3O96018 575 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 NEFMP07197 916 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 PRIM1P49642 420 aaKnown RBP13.04□□□□□ -0.32
PSEN1-213ENST00000555386 MPRIPQ6WCQ1 1025 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 DEFB132Q7Z7B7 95 aa13.04□□□□□ -0.32
PSEN1-213ENST00000555386 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.04□□□□□ -0.326e-6■□□□□ 8.9
PSEN1-213ENST00000555386 ADAMTS8Q9UP79 889 aa13.03□□□□□ -0.32
PSEN1-213ENST00000555386 ITGB4P16144 1822 aa13.02□□□□□ -0.33
PSEN1-213ENST00000555386 MAPK8IP3Q9UPT6 1336 aa13.02□□□□□ -0.33
PSEN1-213ENST00000555386 NEFLP07196 543 aa13.01□□□□□ -0.33
PSEN1-213ENST00000555386 EN1Q05925 392 aaPredicted RBP13.01□□□□□ -0.33
PSEN1-213ENST00000555386 FAM9BQ8IZU0 186 aa13.01□□□□□ -0.33
PSEN1-213ENST00000555386 TNS1Q9HBL0 1735 aaKnown RBP13.01□□□□□ -0.33
PSEN1-213ENST00000555386 TOGARAM1Q9Y4F4 1720 aa13.01□□□□□ -0.33
PSEN1-213ENST00000555386 BTAF1O14981 1849 aa13.01□□□□□ -0.33
PSEN1-213ENST00000555386 DLG5Q8TDM6 1919 aa13□□□□□ -0.33
PSEN1-213ENST00000555386 NHSQ6T4R5 1651 aa13□□□□□ -0.33
PSEN1-213ENST00000555386 NEUROD2Q15784 382 aa13□□□□□ -0.33
PSEN1-213ENST00000555386 AKAP4Q5JQC9 854 aa13□□□□□ -0.33
PSEN1-213ENST00000555386 GAS2L2Q8NHY3 880 aa13□□□□□ -0.33
PSEN1-213ENST00000555386 BCL11BQ9C0K0 894 aaPredicted RBP13□□□□□ -0.33
PSEN1-213ENST00000555386 RRP7AQ9Y3A4 280 aaKnown RBP13□□□□□ -0.33
PSEN1-213ENST00000555386 BAG6P46379 1132 aa12.99□□□□□ -0.33
PSEN1-213ENST00000555386 PNNQ9H307 717 aaKnown RBP12.99□□□□□ -0.33
PSEN1-213ENST00000555386 LGR6Q9HBX8 967 aa12.99□□□□□ -0.33
PSEN1-213ENST00000555386 HSP90AB1P08238 724 aaKnown RBP12.98□□□□□ -0.33
PSEN1-213ENST00000555386 HNRNPUQ00839 825 aaKnown RBP eCLIP12.98□□□□□ -0.33
PSEN1-213ENST00000555386 FKBP8Q14318 412 aa12.98□□□□□ -0.33
PSEN1-213ENST00000555386 POTEDQ86YR6 584 aa12.98□□□□□ -0.33
PSEN1-213ENST00000555386 PLEKHF1Q96S99 279 aa12.98□□□□□ -0.33
PSEN1-213ENST00000555386 SCN11AQ9UI33 1791 aa12.98□□□□□ -0.33
PSEN1-213ENST00000555386 MAP3K5Q99683 1374 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms