RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 WWC1Q8IX03 1113 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 PPP1R12CQ9BZL4 782 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 ALG2Q9H553 416 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 TOR4AQ9NXH8 423 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 LAS1LQ9Y4W2 734 aaKnown RBP3.43□□□□□ -1.86
PRPF39-207ENST00000554439 PRDM2Q13029 1718 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 MAGI3Q5TCQ9 1506 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 TMEM88BA6NKF7 163 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 RFX1P22670 979 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 SKAP1Q86WV1 359 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 HLA-CQ95604 372 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 EMID1Q96A84 441 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-207ENST00000554439 DACH1Q9UI36 760 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 NUDCQ9Y266 331 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 CADPSQ9ULU8 1353 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 SMG6Q86US8 1419 aaKnown RBP3.42□□□□□ -1.86
PRPF39-207ENST00000554439 HOXA2O43364 376 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 ZPR1O75312 459 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 DNAJB2P25686 324 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 HDGFP51858 240 aaKnown RBP3.42□□□□□ -1.86
PRPF39-207ENST00000554439 VAC14Q08AM6 782 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 ZNF326Q5BKZ1 582 aaKnown RBP3.42□□□□□ -1.86
PRPF39-207ENST00000554439 EPS8L1Q8TE68 723 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 KRTAP9-4Q9BYQ2 154 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 EFCAB5A4FU69 1503 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 PALM3A6NDB9 673 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-207ENST00000554439 PDE4CQ08493 712 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 PRM3Q9NNZ6 103 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 CTTNBP2Q8WZ74 1663 aa3.42□□□□□ -1.86
PRPF39-207ENST00000554439 RNF123Q5XPI4 1314 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 DHX29Q7Z478 1369 aaKnown RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 HECW1Q76N89 1606 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 SPATA31E1Q6ZUB1 1445 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 SUPT6HQ7KZ85 1726 aaKnown RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 NUTM2BA6NNL0 878 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 NUTM2EB1AL46 878 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 IGSF3O75054 1194 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 KDM4AO75164 1064 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 RBM25P49756 843 aaKnown RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 GUCA2AQ02747 115 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 NUTM2DQ5VT03 806 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 LIAT1Q6ZQX7 453 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 NUTM2AQ8IVF1 878 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 CYP4X1Q8N118 509 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 EXOC6Q8TAG9 804 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 TATDN2Q93075 761 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 ZBTB3Q9H5J0 574 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 POLA1P09884 1462 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 GRIN2BQ13224 1484 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 UGGT2Q9NYU1 1516 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 NEFMP07197 916 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 SNRPBP14678 240 aaKnown RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 GCGRP47871 477 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 WASHC4Q2M389 1173 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 PRR7Q8TB68 274 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 LRRN4Q8WUT4 740 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 PKD2L1Q9P0L9 805 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 SEPT9Q9UHD8 586 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-207ENST00000554439 ANKRD30BQ9BXX2 1392 aa3.41□□□□□ -1.86
PRPF39-207ENST00000554439 FANCD2Q9BXW9 1451 aa3.4□□□□□ -1.86
PRPF39-207ENST00000554439 PATL2C9JE40 543 aaKnown RBP3.4□□□□□ -1.86
PRPF39-207ENST00000554439 CFAP99D6REC4 459 aa3.4□□□□□ -1.86
PRPF39-207ENST00000554439 NKX2-3Q8TAU0 364 aa3.4□□□□□ -1.86
PRPF39-207ENST00000554439 GCC2Q8IWJ2 1684 aa3.4□□□□□ -1.86
PRPF39-207ENST00000554439 ZNF644Q9H582 1327 aaPredicted RBP3.4□□□□□ -1.86
PRPF39-207ENST00000554439 BCORL1Q5H9F3 1711 aa3.4□□□□□ -1.86
PRPF39-207ENST00000554439 TDRD9Q8NDG6 1382 aaKnown RBP3.4□□□□□ -1.86
PRPF39-207ENST00000554439 TEX14Q8IWB6 1497 aa3.4□□□□□ -1.87
PRPF39-207ENST00000554439 SMAPO00193 183 aa3.4□□□□□ -1.87
PRPF39-207ENST00000554439 TNFRSF10AO00220 468 aa3.4□□□□□ -1.87
PRPF39-207ENST00000554439 PNISRQ8TF01 805 aaKnown RBP3.4□□□□□ -1.87
PRPF39-207ENST00000554439 TFIP11Q9UBB9 837 aaKnown RBP3.4□□□□□ -1.87
PRPF39-207ENST00000554439 PNMA3Q9UL41 463 aa3.4□□□□□ -1.87
PRPF39-207ENST00000554439 RPRD2Q5VT52 1461 aaKnown RBP3.4□□□□□ -1.87
PRPF39-207ENST00000554439 ABCA10Q8WWZ4 1543 aa3.4□□□□□ -1.87
PRPF39-207ENST00000554439 SLC10A3P09131 477 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 CSB-PGBD3P0DP91 1061 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 TMC1Q8TDI8 760 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 KRTAP4-7Q9BYR0 210 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 IVNS1ABPQ9Y6Y0 642 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 ARHGEF11O15085 1522 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 EHBP1L1Q8N3D4 1523 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 NESP48681 1621 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 PLIN1O60240 522 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 VSIG8P0DPA2 414 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 FDX1P10109 184 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 LMOD1P29536 600 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-207ENST00000554439 SLC4A3P48751 1232 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 CDK13Q14004 1512 aaKnown RBP3.39□□□□□ -1.87
PRPF39-207ENST00000554439 TOPBP1Q92547 1522 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 SAMD9Q5K651 1589 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 POLR1AO95602 1720 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-207ENST00000554439 CUL7Q14999 1698 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 ABCA5Q8WWZ7 1642 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 TCOF1Q13428 1488 aaKnown RBP3.39□□□□□ -1.87
PRPF39-207ENST00000554439 USP47Q96K76 1375 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 NBPF26B4DH59 902 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 ATG7O95352 703 aa3.39□□□□□ -1.87
PRPF39-207ENST00000554439 RRP1P56182 461 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms