RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 OSBPL3Q9H4L5 887 aa6.96□□□□□ -1.3
VRK1-202ENST00000553683 POTECB2RU33 542 aa6.95□□□□□ -1.3
VRK1-202ENST00000553683 PLEKHM2Q8IWE5 1019 aa6.95□□□□□ -1.3
VRK1-202ENST00000553683 NPAS3Q8IXF0 933 aa6.95□□□□□ -1.3
VRK1-202ENST00000553683 ADAMTS19Q8TE59 1207 aa6.95□□□□□ -1.3
VRK1-202ENST00000553683 SNRPBP14678 240 aaKnown RBP6.94□□□□□ -1.3
VRK1-202ENST00000553683 SCTRP47872 440 aa6.94□□□□□ -1.3
VRK1-202ENST00000553683 CLN3Q13286 438 aa6.94□□□□□ -1.3
VRK1-202ENST00000553683 GLMNQ92990 594 aa6.94□□□□□ -1.3
VRK1-202ENST00000553683 TTLL8A6PVC2 850 aa6.93□□□□□ -1.3
VRK1-202ENST00000553683 WASLO00401 505 aaPredicted RBP6.93□□□□□ -1.3
VRK1-202ENST00000553683 RNF144AP50876 292 aaPredicted RBP6.93□□□□□ -1.3
VRK1-202ENST00000553683 RELBQ01201 579 aa6.93□□□□□ -1.3
VRK1-202ENST00000553683 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.93□□□□□ -1.33e-7■□□□□ 10.2
VRK1-202ENST00000553683 EML3Q32P44 896 aa6.93□□□□□ -1.3
VRK1-202ENST00000553683 ESCO1Q5FWF5 840 aa6.93□□□□□ -1.3
VRK1-202ENST00000553683 C6orf118Q5T5N4 469 aa6.93□□□□□ -1.3
VRK1-202ENST00000553683 CDCA7Q9BWT1 371 aaPredicted RBP6.93□□□□□ -1.3
VRK1-202ENST00000553683 ATP9BO43861 1147 aa6.92□□□□□ -1.3
VRK1-202ENST00000553683 SKIP12755 728 aa6.92□□□□□ -1.3
VRK1-202ENST00000553683 TSGA10IPQ3SY00 556 aa6.92□□□□□ -1.3
VRK1-202ENST00000553683 CALR3Q96L12 384 aaKnown RBP6.92□□□□□ -1.3
VRK1-202ENST00000553683 AGBL1Q96MI9 1066 aa6.92□□□□□ -1.3
VRK1-202ENST00000553683 A0A1W2PRU2 124 aa6.91□□□□□ -1.3
VRK1-202ENST00000553683 MAN1A2O60476 641 aa6.91□□□□□ -1.3
VRK1-202ENST00000553683 WDR44Q5JSH3 913 aa6.91□□□□□ -1.3
VRK1-202ENST00000553683 UCN2Q96RP3 112 aa6.91□□□□□ -1.3
VRK1-202ENST00000553683 ESYT1Q9BSJ8 1104 aa6.91□□□□□ -1.3
VRK1-202ENST00000553683 NOD1Q9Y239 953 aa6.91□□□□□ -1.3
VRK1-202ENST00000553683 USP17L5A8MUK1 530 aa6.9□□□□□ -1.3
VRK1-202ENST00000553683 PIK3CDO00329 1044 aa6.9□□□□□ -1.3
VRK1-202ENST00000553683 OXLD1Q5BKU9 147 aa6.9□□□□□ -1.3
VRK1-202ENST00000553683 TRIM50Q86XT4 487 aa6.9□□□□□ -1.3
VRK1-202ENST00000553683 XAGE2Q96GT9 111 aa6.9□□□□□ -1.3
VRK1-202ENST00000553683 INSM2Q96T92 566 aaPredicted RBP6.9□□□□□ -1.3
VRK1-202ENST00000553683 CTSOP43234 321 aaPredicted RBP6.89□□□□□ -1.31
VRK1-202ENST00000553683 RNF217Q8TC41 542 aa6.89□□□□□ -1.31
VRK1-202ENST00000553683 NLRP3Q96P20 1036 aa6.89□□□□□ -1.31
VRK1-202ENST00000553683 ZNF395Q9H8N7 513 aaPredicted RBP6.89□□□□□ -1.31
VRK1-202ENST00000553683 POLMQ9NP87 494 aaPredicted RBP6.89□□□□□ -1.31
VRK1-202ENST00000553683 NXF1Q9UBU9 619 aaKnown RBP6.89□□□□□ -1.31
VRK1-202ENST00000553683 DNMT3LQ9UJW3 386 aa6.89□□□□□ -1.31
VRK1-202ENST00000553683 HRH3Q9Y5N1 445 aa6.89□□□□□ -1.31
VRK1-202ENST00000553683 USP17L3A6NCW0 530 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 USP17L4A6NCW7 530 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 ATP1A2P50993 1020 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 NCOA4Q13772 614 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 FOXD4L5Q5VV16 416 aaPredicted RBP6.88□□□□□ -1.31
VRK1-202ENST00000553683 USP17L2Q6R6M4 530 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 TBC1D9Q6ZT07 1266 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 USP17L1Q7RTZ2 530 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 PPP1R12CQ9BZL4 782 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 GRIP2Q9C0E4 1043 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 PCDHGA11Q9Y5H2 935 aa6.88□□□□□ -1.31
VRK1-202ENST00000553683 SPATA31C2B4DYI2 1134 aa6.87□□□□□ -1.31
VRK1-202ENST00000553683 LYSMD3Q7Z3D4 306 aa6.87□□□□□ -1.31
VRK1-202ENST00000553683 CNKSR1Q969H4 720 aa6.87□□□□□ -1.31
VRK1-202ENST00000553683 ARHGEF10LQ9HCE6 1279 aa6.87□□□□□ -1.31
VRK1-202ENST00000553683 MAFBQ9Y5Q3 323 aaPredicted RBP6.87□□□□□ -1.31
VRK1-202ENST00000553683 PALM3A6NDB9 673 aaPredicted RBP6.86□□□□□ -1.31
VRK1-202ENST00000553683 MEN1O00255 615 aa6.86□□□□□ -1.31
VRK1-202ENST00000553683 TERTO14746 1132 aaKnown RBP6.86□□□□□ -1.31
VRK1-202ENST00000553683 IL2RAP01589 272 aa6.86□□□□□ -1.31
VRK1-202ENST00000553683 INHAP05111 366 aa6.86□□□□□ -1.31
VRK1-202ENST00000553683 LARGE2Q8N3Y3 721 aa6.86□□□□□ -1.31
VRK1-202ENST00000553683 ZNF775Q96BV0 537 aaPredicted RBP6.86□□□□□ -1.31
VRK1-202ENST00000553683 SLC4A9Q96Q91 983 aa6.86□□□□□ -1.31
VRK1-202ENST00000553683 TFIP11Q9UBB9 837 aaKnown RBP6.86□□□□□ -1.31
VRK1-202ENST00000553683 ZNF777Q9ULD5 760 aaPredicted RBP6.86□□□□□ -1.31
VRK1-202ENST00000553683 SCNN1DP51172 638 aa6.85□□□□□ -1.31
VRK1-202ENST00000553683 GTF2IP78347 998 aa6.85□□□□□ -1.31
VRK1-202ENST00000553683 CENPCQ03188 943 aa6.85□□□□□ -1.31
VRK1-202ENST00000553683 SLC16A10Q8TF71 515 aa6.85□□□□□ -1.31
VRK1-202ENST00000553683 ETNK1Q9HBU6 452 aa6.85□□□□□ -1.31
VRK1-202ENST00000553683 M0R2N6 131 aa6.84□□□□□ -1.31
VRK1-202ENST00000553683 BACH1O14867 736 aa6.84□□□□□ -1.31
VRK1-202ENST00000553683 GTF2E1P29083 439 aaPredicted RBP6.84□□□□□ -1.31
VRK1-202ENST00000553683 GDF10P55107 478 aa6.84□□□□□ -1.31
VRK1-202ENST00000553683 PTSQ03393 145 aa6.84□□□□□ -1.31
VRK1-202ENST00000553683 SLC27A3Q5K4L6 730 aa6.84□□□□□ -1.31
VRK1-202ENST00000553683 TREML4Q6UXN2 200 aa6.84□□□□□ -1.31
VRK1-202ENST00000553683 C14orf37Q86TY3 774 aa6.84□□□□□ -1.31
VRK1-202ENST00000553683 FHDC1Q9C0D6 1143 aaPredicted RBP6.84□□□□□ -1.31
VRK1-202ENST00000553683 MKRN1Q9UHC7 482 aaKnown RBP6.84□□□□□ -1.31
VRK1-202ENST00000553683 SLC35F4A4IF30 521 aa6.83□□□□□ -1.32
VRK1-202ENST00000553683 FIGNL2A6NMB9 653 aa6.83□□□□□ -1.32
VRK1-202ENST00000553683 H3BM21 787 aa6.83□□□□□ -1.32
VRK1-202ENST00000553683 VSIG8P0DPA2 414 aa6.83□□□□□ -1.32
VRK1-202ENST00000553683 NFX1Q12986 1120 aaKnown RBP6.83□□□□□ -1.32
VRK1-202ENST00000553683 MTFR1Q15390 333 aa6.83□□□□□ -1.32
VRK1-202ENST00000553683 PPARGC1BQ86YN6 1023 aaKnown RBP6.83□□□□□ -1.32
VRK1-202ENST00000553683 SIX5Q8N196 739 aa6.83□□□□□ -1.32
VRK1-202ENST00000553683 GMCL1Q96IK5 515 aa6.83□□□□□ -1.32
VRK1-202ENST00000553683 SERPINA10Q9UK55 444 aa6.83□□□□□ -1.32
VRK1-202ENST00000553683 TMEM229AB2RXF0 380 aa6.82□□□□□ -1.32
VRK1-202ENST00000553683 ZBTB7BO15156 539 aaPredicted RBP6.82□□□□□ -1.32
VRK1-202ENST00000553683 SMTNP53814 917 aa6.82□□□□□ -1.32
VRK1-202ENST00000553683 DEPDC4Q8N2C3 294 aa6.82□□□□□ -1.32
VRK1-202ENST00000553683 NBPF15Q8N660 670 aa6.82□□□□□ -1.32
VRK1-202ENST00000553683 NANOS1Q8WY41 292 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms