RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 HSP90AB3PQ58FF7 597 aa13.78□□□□□ -0.2
CDH3-203ENST00000542274 NINLQ9Y2I6 1382 aa13.78□□□□□ -0.2
CDH3-203ENST00000542274 TRIM6-TRIM34B2RNG4 842 aa13.78□□□□□ -0.2
CDH3-203ENST00000542274 PDE4AP27815 886 aa13.78□□□□□ -0.2
CDH3-203ENST00000542274 TCP11L2Q8N4U5 519 aa13.78□□□□□ -0.2
CDH3-203ENST00000542274 SIRT1Q96EB6 747 aa13.78□□□□□ -0.2
CDH3-203ENST00000542274 TRIM34Q9BYJ4 488 aa13.78□□□□□ -0.2
CDH3-203ENST00000542274 DIP2AQ14689 1571 aa13.78□□□□□ -0.2
CDH3-203ENST00000542274 XRN1Q8IZH2 1706 aaKnown RBP13.77□□□□□ -0.2
CDH3-203ENST00000542274 U2AF1L5P0DN76 240 aaPredicted RBP13.77□□□□□ -0.21
CDH3-203ENST00000542274 U2AF1Q01081 240 aaKnown RBP eCLIP13.77□□□□□ -0.21
CDH3-203ENST00000542274 ATP7BP35670 1465 aa13.77□□□□□ -0.21
CDH3-203ENST00000542274 RGPD8O14715 1765 aaPredicted RBP13.77□□□□□ -0.21
CDH3-203ENST00000542274 ZNF500O60304 480 aaPredicted RBP13.77□□□□□ -0.21
CDH3-203ENST00000542274 TRMT2AQ8IZ69 625 aaKnown RBP13.77□□□□□ -0.21
CDH3-203ENST00000542274 OFD1O75665 1012 aa13.76□□□□□ -0.21
CDH3-203ENST00000542274 KIF20BQ96Q89 1820 aa13.76□□□□□ -0.21
CDH3-203ENST00000542274 U2SURPO15042 1029 aaKnown RBP13.76□□□□□ -0.21
CDH3-203ENST00000542274 CBX1P83916 185 aa13.75□□□□□ -0.21
CDH3-203ENST00000542274 ZRANB1Q9UGI0 708 aa13.75□□□□□ -0.21
CDH3-203ENST00000542274 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.75□□□□□ -0.21
CDH3-203ENST00000542274 CHD2O14647 1828 aaKnown RBP13.74□□□□□ -0.21
CDH3-203ENST00000542274 GOLIM4O00461 696 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 CC2D2BQ6DHV5 1058 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 RUNDC1Q96C34 613 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 CCDC61Q9Y6R9 512 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 ADGRB2O60241 1585 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 ITSN1Q15811 1721 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 PTCH1Q13635 1447 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 NBPF11Q86T75 865 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 BACH2Q9BYV9 841 aa13.74□□□□□ -0.21
CDH3-203ENST00000542274 ANKRD26Q9UPS8 1709 aa13.73□□□□□ -0.21
CDH3-203ENST00000542274 UQCRHLA0A096LP55 91 aa13.73□□□□□ -0.21
CDH3-203ENST00000542274 UQCRHP07919 91 aa13.73□□□□□ -0.21
CDH3-203ENST00000542274 HSPA2P54652 639 aa13.73□□□□□ -0.21
CDH3-203ENST00000542274 RNF217Q8TC41 542 aa13.73□□□□□ -0.21
CDH3-203ENST00000542274 NPHP4O75161 1426 aaPredicted RBP13.73□□□□□ -0.21
CDH3-203ENST00000542274 NME9Q86XW9 330 aa13.73□□□□□ -0.21
CDH3-203ENST00000542274 CFAP53Q96M91 514 aa13.73□□□□□ -0.21
CDH3-203ENST00000542274 CDC42BPGQ6DT37 1551 aa13.73□□□□□ -0.21
CDH3-203ENST00000542274 FSD2A1L4K1 749 aa13.72□□□□□ -0.21
CDH3-203ENST00000542274 CT47A1Q5JQC4 288 aaPredicted RBP13.72□□□□□ -0.21
CDH3-203ENST00000542274 PMFBP1Q8TBY8 1022 aa13.72□□□□□ -0.21
CDH3-203ENST00000542274 NKTRP30414 1462 aaKnown RBP13.72□□□□□ -0.21
CDH3-203ENST00000542274 AKAP12Q02952 1782 aa13.72□□□□□ -0.21
CDH3-203ENST00000542274 MAFGO15525 162 aa13.72□□□□□ -0.21
CDH3-203ENST00000542274 BCL2L13Q9BXK5 485 aa13.72□□□□□ -0.21
CDH3-203ENST00000542274 MYH16Q9H6N6 1097 aa13.72□□□□□ -0.21
CDH3-203ENST00000542274 R3HCC1Q9Y3T6 440 aaKnown RBP13.72□□□□□ -0.21
CDH3-203ENST00000542274 CPSF1Q10570 1443 aaKnown RBP13.71□□□□□ -0.21
CDH3-203ENST00000542274 NSD2O96028 1365 aa13.71□□□□□ -0.21
CDH3-203ENST00000542274 MON2Q7Z3U7 1717 aa13.71□□□□□ -0.21
CDH3-203ENST00000542274 DYNC1I1O14576 645 aa13.71□□□□□ -0.21
CDH3-203ENST00000542274 TOPAZ1Q8N9V7 1692 aa13.71□□□□□ -0.21
CDH3-203ENST00000542274 IQSEC2Q5JU85 1478 aa13.71□□□□□ -0.22
CDH3-203ENST00000542274 TTC36A6NLP5 189 aa13.7□□□□□ -0.22
CDH3-203ENST00000542274 TNNQ9UQP3 1299 aa13.7□□□□□ -0.22
CDH3-203ENST00000542274 ACEP12821 1306 aa13.7□□□□□ -0.22
CDH3-203ENST00000542274 KDM4FA0A1W2PPD8 638 aa13.7□□□□□ -0.22
CDH3-203ENST00000542274 MAP2K1Q02750 393 aaPredicted RBP13.7□□□□□ -0.22
CDH3-203ENST00000542274 NALCNQ8IZF0 1738 aa13.7□□□□□ -0.22
CDH3-203ENST00000542274 SATB1Q01826 763 aa13.7□□□□□ -0.22
CDH3-203ENST00000542274 PIK3R4Q99570 1358 aa13.68□□□□□ -0.22
CDH3-203ENST00000542274 EDC4Q6P2E9 1401 aaKnown RBP13.68□□□□□ -0.22
CDH3-203ENST00000542274 TSR2Q969E8 191 aaKnown RBP13.68□□□□□ -0.22
CDH3-203ENST00000542274 MAP2P11137 1827 aaKnown RBP13.68□□□□□ -0.22
CDH3-203ENST00000542274 CAPN2P17655 700 aa13.68□□□□□ -0.22
CDH3-203ENST00000542274 ZBTB12Q9Y330 459 aaPredicted RBP13.68□□□□□ -0.22
CDH3-203ENST00000542274 CEP83Q9Y592 693 aa13.68□□□□□ -0.22
CDH3-203ENST00000542274 PANK1Q8TE04 598 aa13.67□□□□□ -0.22
CDH3-203ENST00000542274 PHF23Q9BUL5 403 aaPredicted RBP13.67□□□□□ -0.22
CDH3-203ENST00000542274 EMILIN1Q9Y6C2 1016 aa13.67□□□□□ -0.22
CDH3-203ENST00000542274 ZNF771Q7L3S4 317 aaPredicted RBP13.67□□□□□ -0.22
CDH3-203ENST00000542274 COL3A1P02461 1466 aaPredicted RBP13.67□□□□□ -0.22
CDH3-203ENST00000542274 PLEKHF1Q96S99 279 aa13.66□□□□□ -0.22
CDH3-203ENST00000542274 FMN2Q9NZ56 1722 aa13.65□□□□□ -0.22
CDH3-203ENST00000542274 POLKQ9UBT6 870 aa13.65□□□□□ -0.22
CDH3-203ENST00000542274 NGDNQ8NEJ9 315 aaKnown RBP13.65□□□□□ -0.22
CDH3-203ENST00000542274 COG6Q9Y2V7 657 aa13.65□□□□□ -0.22
CDH3-203ENST00000542274 HMOX1P09601 288 aa13.64□□□□□ -0.23
CDH3-203ENST00000542274 RRS1Q15050 365 aaKnown RBP13.64□□□□□ -0.23
CDH3-203ENST00000542274 NBPF9Q3BBW0 867 aa13.64□□□□□ -0.23
CDH3-203ENST00000542274 NRKQ7Z2Y5 1582 aa13.64□□□□□ -0.23
CDH3-203ENST00000542274 PLEKHG3A1L390 1219 aa13.64□□□□□ -0.23
CDH3-203ENST00000542274 DIAPH1O60610 1272 aaKnown RBP13.64□□□□□ -0.23
CDH3-203ENST00000542274 MRE11P49959 708 aa13.64□□□□□ -0.23
CDH3-203ENST00000542274 TTC21BQ7Z4L5 1316 aa13.64□□□□□ -0.23
CDH3-203ENST00000542274 TMPOP42166 694 aaKnown RBP13.63□□□□□ -0.23
CDH3-203ENST00000542274 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.63□□□□□ -0.23
CDH3-203ENST00000542274 MYCBPQ99417 103 aaPredicted RBP13.63□□□□□ -0.23
CDH3-203ENST00000542274 EFCC1Q9HA90 598 aa13.63□□□□□ -0.23
CDH3-203ENST00000542274 TRIM35Q9UPQ4 493 aa13.63□□□□□ -0.23
CDH3-203ENST00000542274 USP6P35125 1406 aa13.63□□□□□ -0.23
CDH3-203ENST00000542274 RARSP54136 660 aaKnown RBP13.63□□□□□ -0.23
CDH3-203ENST00000542274 CLUAP1Q96AJ1 413 aa13.63□□□□□ -0.23
CDH3-203ENST00000542274 KDM2BQ8NHM5 1336 aa13.63□□□□□ -0.23
CDH3-203ENST00000542274 COG3Q96JB2 828 aa13.63□□□□□ -0.23
CDH3-203ENST00000542274 TIGD1Q96MW7 591 aa13.63□□□□□ -0.23
CDH3-203ENST00000542274 TULP2O00295 520 aa13.62□□□□□ -0.23
CDH3-203ENST00000542274 RLBP1P12271 317 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms