RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 SH3BP5LQ7L8J4 393 aa8.5□□□□□ -1.05
CPSF7-220ENST00000541963 SPNS2Q8IVW8 549 aa8.5□□□□□ -1.05
CPSF7-220ENST00000541963 CEP126Q9P2H0 1117 aa8.5□□□□□ -1.05
CPSF7-220ENST00000541963 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.49□□□□□ -1.05
CPSF7-220ENST00000541963 RNF135Q8IUD6 432 aa8.49□□□□□ -1.05
CPSF7-220ENST00000541963 ZNF511Q8NB15 262 aa8.49□□□□□ -1.05
CPSF7-220ENST00000541963 UCN2Q96RP3 112 aa8.49□□□□□ -1.05
CPSF7-220ENST00000541963 VRTNQ9H8Y1 702 aa8.49□□□□□ -1.05
CPSF7-220ENST00000541963 MAFBQ9Y5Q3 323 aaPredicted RBP8.49□□□□□ -1.05
CPSF7-220ENST00000541963 KDM6BO15054 1643 aa8.49□□□□□ -1.05
CPSF7-220ENST00000541963 ARHGAP35Q9NRY4 1499 aa8.49□□□□□ -1.05
CPSF7-220ENST00000541963 MAP3K4Q9Y6R4 1608 aa8.48□□□□□ -1.05
CPSF7-220ENST00000541963 ANKLE1Q8NAG6 615 aa8.48□□□□□ -1.05
CPSF7-220ENST00000541963 SLC10A4Q96EP9 437 aa8.48□□□□□ -1.05
CPSF7-220ENST00000541963 NUP153P49790 1475 aaKnown RBP8.48□□□□□ -1.05
CPSF7-220ENST00000541963 CFAP43Q8NDM7 1665 aa8.47□□□□□ -1.05
CPSF7-220ENST00000541963 ZBTB7CA1YPR0 619 aa8.47□□□□□ -1.05
CPSF7-220ENST00000541963 PPEF1O14829 653 aaPredicted RBP8.47□□□□□ -1.05
CPSF7-220ENST00000541963 LZTS3O60299 673 aaPredicted RBP8.47□□□□□ -1.05
CPSF7-220ENST00000541963 RNF20Q5VTR2 975 aa8.47□□□□□ -1.05
CPSF7-220ENST00000541963 RETREG2Q8NC44 543 aa8.47□□□□□ -1.05
CPSF7-220ENST00000541963 PHLDB1Q86UU1 1377 aa8.47□□□□□ -1.05
CPSF7-220ENST00000541963 MAGI3Q5TCQ9 1506 aa8.46□□□□□ -1.05
CPSF7-220ENST00000541963 RNF223E7ERA6 249 aa8.46□□□□□ -1.06
CPSF7-220ENST00000541963 MAP7D1Q3KQU3 841 aa8.46□□□□□ -1.06
CPSF7-220ENST00000541963 FOXJ1Q92949 421 aa8.46□□□□□ -1.06
CPSF7-220ENST00000541963 TRAIPQ9BWF2 469 aa8.46□□□□□ -1.06
CPSF7-220ENST00000541963 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.46□□□□□ -1.06
CPSF7-220ENST00000541963 CDV3Q9UKY7 258 aaKnown RBP8.46□□□□□ -1.06
CPSF7-220ENST00000541963 CLIP1P30622 1438 aa8.46□□□□□ -1.06
CPSF7-220ENST00000541963 HECW1Q76N89 1606 aa8.45□□□□□ -1.06
CPSF7-220ENST00000541963 CD2BP2O95400 341 aaKnown RBP8.45□□□□□ -1.06
CPSF7-220ENST00000541963 NBPF20Q3BBV1 942 aa8.45□□□□□ -1.06
CPSF7-220ENST00000541963 CDCA8Q53HL2 280 aa8.45□□□□□ -1.06
CPSF7-220ENST00000541963 OCSTAMPQ9BR26 566 aa8.45□□□□□ -1.06
CPSF7-220ENST00000541963 PPRC1Q5VV67 1664 aaKnown RBP8.44□□□□□ -1.06
CPSF7-220ENST00000541963 USP17L5A8MUK1 530 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 PIK3CDO00329 1044 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 SH3BP2P78314 561 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 ERFEQ4G0M1 354 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 SH3RF1Q7Z6J0 888 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 CCDC125Q86Z20 511 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 PLEKHM2Q8IWE5 1019 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 KCTD17Q8N5Z5 321 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 FAM174AQ8TBP5 190 aa8.44□□□□□ -1.06
CPSF7-220ENST00000541963 USP17L3A6NCW0 530 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 USP17L4A6NCW7 530 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 RPIAP49247 311 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 WNT7BP56706 349 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 TRIM32Q13049 653 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 EML3Q32P44 896 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 PPP1R18Q6NYC8 613 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 LARP1Q6PKG0 1096 aaKnown RBP8.43□□□□□ -1.06
CPSF7-220ENST00000541963 USP17L2Q6R6M4 530 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 USP17L1Q7RTZ2 530 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 PLPP7Q8NBV4 271 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 TRIM52Q96A61 297 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 USTQ9Y2C2 406 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 ABCA9Q8IUA7 1624 aa8.43□□□□□ -1.06
CPSF7-220ENST00000541963 ATP5J2-PTCD1G3V325 749 aa8.42□□□□□ -1.06
CPSF7-220ENST00000541963 ATG7O95352 703 aa8.42□□□□□ -1.06
CPSF7-220ENST00000541963 VARSP26640 1264 aaKnown RBP8.42□□□□□ -1.06
CPSF7-220ENST00000541963 SRPK2P78362 688 aaKnown RBP8.42□□□□□ -1.06
CPSF7-220ENST00000541963 MKRN1Q9UHC7 482 aaKnown RBP8.42□□□□□ -1.06
CPSF7-220ENST00000541963 CASKIN1Q8WXD9 1431 aa8.42□□□□□ -1.06
CPSF7-220ENST00000541963 CCDC18Q5T9S5 1454 aa8.41□□□□□ -1.06
CPSF7-220ENST00000541963 LOC105371045A0A1W2PR82 267 aa8.41□□□□□ -1.06
CPSF7-220ENST00000541963 TRIM50Q86XT4 487 aa8.41□□□□□ -1.06
CPSF7-220ENST00000541963 DEPDC4Q8N2C3 294 aa8.41□□□□□ -1.06
CPSF7-220ENST00000541963 PHTF2Q8N3S3 785 aa8.41□□□□□ -1.06
CPSF7-220ENST00000541963 SIRT1Q96EB6 747 aa8.41□□□□□ -1.06
CPSF7-220ENST00000541963 ESF1Q9H501 851 aaKnown RBP8.41□□□□□ -1.06
CPSF7-220ENST00000541963 DOLKQ9UPQ8 538 aa8.41□□□□□ -1.06
CPSF7-220ENST00000541963 CDK13Q14004 1512 aaKnown RBP8.4□□□□□ -1.06
CPSF7-220ENST00000541963 NEO1Q92859 1461 aa8.4□□□□□ -1.06
CPSF7-220ENST00000541963 GIGYF1O75420 1035 aaPredicted RBP8.4□□□□□ -1.06
CPSF7-220ENST00000541963 NCOA4Q13772 614 aa8.4□□□□□ -1.06
CPSF7-220ENST00000541963 EFCAB2Q5VUJ9 269 aa8.4□□□□□ -1.06
CPSF7-220ENST00000541963 TRMT44Q8IYL2 757 aaKnown RBP8.4□□□□□ -1.06
CPSF7-220ENST00000541963 EHBP1Q8NDI1 1231 aa8.4□□□□□ -1.06
CPSF7-220ENST00000541963 NOD1Q9Y239 953 aa8.4□□□□□ -1.06
CPSF7-220ENST00000541963 RBM19Q9Y4C8 960 aaKnown RBP8.4□□□□□ -1.06
CPSF7-220ENST00000541963 ARAP3Q8WWN8 1544 aa8.39□□□□□ -1.07
CPSF7-220ENST00000541963 COL17A1Q9UMD9 1497 aaPredicted RBP8.39□□□□□ -1.07
CPSF7-220ENST00000541963 TROQ12816 1431 aaPredicted RBP8.39□□□□□ -1.07
CPSF7-220ENST00000541963 PATL2C9JE40 543 aaKnown RBP8.39□□□□□ -1.07
CPSF7-220ENST00000541963 RASA1P20936 1047 aa8.39□□□□□ -1.07
CPSF7-220ENST00000541963 KANK4Q5T7N3 995 aaPredicted RBP8.39□□□□□ -1.07
CPSF7-220ENST00000541963 AEBP1Q8IUX7 1158 aa8.39□□□□□ -1.07
CPSF7-220ENST00000541963 SEPT12Q8IYM1 358 aa8.39□□□□□ -1.07
CPSF7-220ENST00000541963 C1QTNF2Q9BXJ5 285 aa8.39□□□□□ -1.07
CPSF7-220ENST00000541963 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.39□□□□□ -1.07
CPSF7-220ENST00000541963 FYCO1Q9BQS8 1478 aa8.38□□□□□ -1.07
CPSF7-220ENST00000541963 CEP162Q5TB80 1403 aa8.38□□□□□ -1.07
CPSF7-220ENST00000541963 ATP1A2P50993 1020 aa8.38□□□□□ -1.07
CPSF7-220ENST00000541963 TRIM26Q12899 539 aaPredicted RBP8.38□□□□□ -1.07
CPSF7-220ENST00000541963 C4orf48Q5BLP8 95 aa8.38□□□□□ -1.07
CPSF7-220ENST00000541963 VASH1Q7L8A9 365 aaPredicted RBP8.38□□□□□ -1.07
CPSF7-220ENST00000541963 PLCH2O75038 1416 aa8.37□□□□□ -1.07
CPSF7-220ENST00000541963 AKNAQ7Z591 1439 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms