RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 U2SURPO15042 1029 aaKnown RBP17.44■□□□□ 0.38
CCDC42-202ENST00000539522 VIRMAQ69YN4 1812 aaKnown RBP17.43■□□□□ 0.38
CCDC42-202ENST00000539522 MIER1Q8N108 512 aa17.43■□□□□ 0.38
CCDC42-202ENST00000539522 CDCA7Q9BWT1 371 aaPredicted RBP17.43■□□□□ 0.38
CCDC42-202ENST00000539522 CYP27B1O15528 508 aa17.42■□□□□ 0.38
CCDC42-202ENST00000539522 DDB1Q16531 1140 aa17.42■□□□□ 0.38
CCDC42-202ENST00000539522 PHACTR3Q96KR7 559 aa17.42■□□□□ 0.38
CCDC42-202ENST00000539522 PLEKHF1Q96S99 279 aa17.42■□□□□ 0.38
CCDC42-202ENST00000539522 ADAMTS7Q9UKP4 1686 aa17.42■□□□□ 0.38
CCDC42-202ENST00000539522 DOT1LQ8TEK3 1739 aa17.41■□□□□ 0.38
CCDC42-202ENST00000539522 TATP17735 454 aaPredicted RBP17.41■□□□□ 0.38
CCDC42-202ENST00000539522 KRT27Q7Z3Y8 459 aa17.41■□□□□ 0.38
CCDC42-202ENST00000539522 PNISRQ8TF01 805 aaKnown RBP17.41■□□□□ 0.38
CCDC42-202ENST00000539522 RAPGEF4Q8WZA2 1011 aa17.41■□□□□ 0.38
CCDC42-202ENST00000539522 TNS1Q9HBL0 1735 aaKnown RBP17.41■□□□□ 0.38
CCDC42-202ENST00000539522 DLG5Q8TDM6 1919 aa17.41■□□□□ 0.38
CCDC42-202ENST00000539522 PLEKHG2Q9H7P9 1386 aa17.4■□□□□ 0.38
CCDC42-202ENST00000539522 U2AF1L5P0DN76 240 aaPredicted RBP17.4■□□□□ 0.38
CCDC42-202ENST00000539522 U2AF1Q01081 240 aaKnown RBP eCLIP17.4■□□□□ 0.38
CCDC42-202ENST00000539522 ZCRB1Q8TBF4 217 aaKnown RBP17.4■□□□□ 0.38
CCDC42-202ENST00000539522 ADAMTS8Q9UP79 889 aa17.4■□□□□ 0.38
CCDC42-202ENST00000539522 A0A0G2JS52 829 aa17.39■□□□□ 0.37
CCDC42-202ENST00000539522 EXOC5O00471 708 aa17.39■□□□□ 0.37
CCDC42-202ENST00000539522 PRKAR2BP31323 418 aa17.39■□□□□ 0.37
CCDC42-202ENST00000539522 MYT1Q01538 1121 aa17.39■□□□□ 0.37
CCDC42-202ENST00000539522 PTF1AQ7RTS3 328 aa17.39■□□□□ 0.37
CCDC42-202ENST00000539522 BCL9O00512 1426 aa17.38■□□□□ 0.37
CCDC42-202ENST00000539522 MTHFSDQ2M296 383 aaKnown RBP17.38■□□□□ 0.37
CCDC42-202ENST00000539522 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCDC42-202ENST00000539522 NHSQ6T4R5 1651 aa17.38■□□□□ 0.37
CCDC42-202ENST00000539522 SCN11AQ9UI33 1791 aa17.38■□□□□ 0.37
CCDC42-202ENST00000539522 ITGB4P16144 1822 aa17.37■□□□□ 0.37
CCDC42-202ENST00000539522 FCHSD2O94868 740 aa17.37■□□□□ 0.37
CCDC42-202ENST00000539522 MRS2Q9HD23 443 aa17.37■□□□□ 0.37
CCDC42-202ENST00000539522 NUDCQ9Y266 331 aa17.37■□□□□ 0.37
CCDC42-202ENST00000539522 KDM6AO15550 1401 aaPredicted RBP17.37■□□□□ 0.37
CCDC42-202ENST00000539522 DDX54Q8TDD1 881 aaKnown RBP17.36■□□□□ 0.37
CCDC42-202ENST00000539522 PHKG2P15735 406 aa17.35■□□□□ 0.37
CCDC42-202ENST00000539522 PDE3BQ13370 1112 aa17.35■□□□□ 0.37
CCDC42-202ENST00000539522 NKX1-1Q15270 411 aaPredicted RBP17.35■□□□□ 0.37
CCDC42-202ENST00000539522 PCDH11XQ9BZA7 1347 aa17.34■□□□□ 0.37
CCDC42-202ENST00000539522 PCDH11YQ9BZA8 1340 aa17.34■□□□□ 0.37
CCDC42-202ENST00000539522 SIPA1L3O60292 1781 aaPredicted RBP17.33■□□□□ 0.37
CCDC42-202ENST00000539522 CCDC146Q8IYE0 955 aa17.33■□□□□ 0.36
CCDC42-202ENST00000539522 BTAF1O14981 1849 aa17.33■□□□□ 0.36
CCDC42-202ENST00000539522 CCER2I3L3R5 266 aa17.32■□□□□ 0.36
CCDC42-202ENST00000539522 KCNQ2O43526 872 aa17.32■□□□□ 0.36
CCDC42-202ENST00000539522 PLEKHO1Q53GL0 409 aaPredicted RBP17.32■□□□□ 0.36
CCDC42-202ENST00000539522 ZNF530Q6P9A1 599 aaPredicted RBP17.32■□□□□ 0.36
CCDC42-202ENST00000539522 SPG7Q9UQ90 795 aa17.32■□□□□ 0.36
CCDC42-202ENST00000539522 AMOTQ4VCS5 1084 aa17.31■□□□□ 0.36
CCDC42-202ENST00000539522 IFNL2Q8IZJ0 200 aa17.3■□□□□ 0.36
CCDC42-202ENST00000539522 MRC1P22897 1456 aa17.3■□□□□ 0.36
CCDC42-202ENST00000539522 WDR43Q15061 677 aaKnown RBP eCLIP17.29■□□□□ 0.36
CCDC42-202ENST00000539522 FAM196AQ6ZSG2 479 aa17.29■□□□□ 0.36
CCDC42-202ENST00000539522 ACSBG1Q96GR2 724 aa17.29■□□□□ 0.36
CCDC42-202ENST00000539522 LGR6Q9HBX8 967 aa17.29■□□□□ 0.36
CCDC42-202ENST00000539522 AKAP4Q5JQC9 854 aa17.28■□□□□ 0.36
CCDC42-202ENST00000539522 UPF1Q92900 1129 aaKnown RBP eCLIP17.28■□□□□ 0.36
CCDC42-202ENST00000539522 PAPPAQ13219 1627 aa17.28■□□□□ 0.36
CCDC42-202ENST00000539522 TRIM37O94972 964 aa17.27■□□□□ 0.36
CCDC42-202ENST00000539522 MPRIPQ6WCQ1 1025 aa17.27■□□□□ 0.36
CCDC42-202ENST00000539522 IL17REQ8NFR9 667 aa17.27■□□□□ 0.36
CCDC42-202ENST00000539522 MAP3K5Q99683 1374 aa17.27■□□□□ 0.35
CCDC42-202ENST00000539522 SENP3-EIF4A1A0A087X0R7 540 aa17.26■□□□□ 0.35
CCDC42-202ENST00000539522 RUNDC1Q96C34 613 aa17.26■□□□□ 0.35
CCDC42-202ENST00000539522 CEMIPQ8WUJ3 1361 aa17.26■□□□□ 0.35
CCDC42-202ENST00000539522 LY75O60449 1722 aa17.25■□□□□ 0.35
CCDC42-202ENST00000539522 TMPOP42166 694 aaKnown RBP17.25■□□□□ 0.35
CCDC42-202ENST00000539522 PRIM1P49642 420 aaKnown RBP17.25■□□□□ 0.35
CCDC42-202ENST00000539522 NFE2L2Q16236 605 aa17.25■□□□□ 0.35
CCDC42-202ENST00000539522 GAS2L2Q8NHY3 880 aa17.25■□□□□ 0.35
CCDC42-202ENST00000539522 RRP7AQ9Y3A4 280 aaKnown RBP17.25■□□□□ 0.35
CCDC42-202ENST00000539522 RNMTO43148 476 aaKnown RBP17.24■□□□□ 0.35
CCDC42-202ENST00000539522 DCTN1Q14203 1278 aa17.24■□□□□ 0.35
CCDC42-202ENST00000539522 FAM9BQ8IZU0 186 aa17.24■□□□□ 0.35
CCDC42-202ENST00000539522 DCAF5Q96JK2 942 aa17.24■□□□□ 0.35
CCDC42-202ENST00000539522 TRIM35Q9UPQ4 493 aa17.24■□□□□ 0.35
CCDC42-202ENST00000539522 RGPD3A6NKT7 1758 aaPredicted RBP17.24■□□□□ 0.35
CCDC42-202ENST00000539522 RGPD4Q7Z3J3 1758 aa17.24■□□□□ 0.35
CCDC42-202ENST00000539522 PIGBQ92521 554 aa17.23■□□□□ 0.35
CCDC42-202ENST00000539522 BCL11BQ9C0K0 894 aaPredicted RBP17.23■□□□□ 0.35
CCDC42-202ENST00000539522 RREB1Q92766 1687 aa17.23■□□□□ 0.35
CCDC42-202ENST00000539522 UBR2Q8IWV8 1755 aa17.23■□□□□ 0.35
CCDC42-202ENST00000539522 KAT6BQ8WYB5 2073 aa17.22■□□□□ 0.35
CCDC42-202ENST00000539522 GNAT3A8MTJ3 354 aa17.22■□□□□ 0.35
CCDC42-202ENST00000539522 APAF1O14727 1248 aa17.22■□□□□ 0.35
CCDC42-202ENST00000539522 C1orf141Q5JVX7 400 aa17.22■□□□□ 0.35
CCDC42-202ENST00000539522 MCM10Q7L590 875 aa17.22■□□□□ 0.35
CCDC42-202ENST00000539522 THUMPD2Q9BTF0 503 aaKnown RBP17.22■□□□□ 0.35
CCDC42-202ENST00000539522 MAPK8IP3Q9UPT6 1336 aa17.21■□□□□ 0.34
CCDC42-202ENST00000539522 KDM3BQ7LBC6 1761 aa17.2■□□□□ 0.34
CCDC42-202ENST00000539522 ERVV-2B6SEH9 535 aa17.2■□□□□ 0.34
CCDC42-202ENST00000539522 DEFB132Q7Z7B7 95 aa17.2■□□□□ 0.34
CCDC42-202ENST00000539522 NUP188Q5SRE5 1749 aa17.19■□□□□ 0.34
CCDC42-202ENST00000539522 HSP90AB1P08238 724 aaKnown RBP17.19■□□□□ 0.34
CCDC42-202ENST00000539522 RIPK4P57078 832 aa17.19■□□□□ 0.34
CCDC42-202ENST00000539522 PROM2Q8N271 834 aa17.19■□□□□ 0.34
CCDC42-202ENST00000539522 NFATC2IPQ8NCF5 419 aa17.19■□□□□ 0.34
CCDC42-202ENST00000539522 PNNQ9H307 717 aaKnown RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms