RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 LRRC37A3O60309 1634 aa18.79■□□□□ 0.6
USF1-209ENST00000529476 U2SURPO15042 1029 aaKnown RBP18.79■□□□□ 0.6
USF1-209ENST00000529476 IL2RBP14784 551 aa18.79■□□□□ 0.6
USF1-209ENST00000529476 EZH2Q15910 746 aaKnown RBP18.79■□□□□ 0.6
USF1-209ENST00000529476 AEBP1Q8IUX7 1158 aa18.78■□□□□ 0.6
USF1-209ENST00000529476 CDCA7Q9BWT1 371 aaPredicted RBP18.78■□□□□ 0.6
USF1-209ENST00000529476 SULT6B1Q6IMI4 303 aa18.77■□□□□ 0.6
USF1-209ENST00000529476 HMOX1P09601 288 aa18.76■□□□□ 0.59
USF1-209ENST00000529476 CCDC184Q52MB2 194 aa18.76■□□□□ 0.59
USF1-209ENST00000529476 RAPGEF4Q8WZA2 1011 aa18.76■□□□□ 0.59
USF1-209ENST00000529476 NUDCQ9Y266 331 aa18.76■□□□□ 0.59
USF1-209ENST00000529476 OVOS2A0A0G2JMS6 1433 aa18.75■□□□□ 0.59
USF1-209ENST00000529476 KDRP35968 1356 aa18.75■□□□□ 0.59
USF1-209ENST00000529476 U2AF1L5P0DN76 240 aaPredicted RBP18.74■□□□□ 0.59
USF1-209ENST00000529476 TATP17735 454 aaPredicted RBP18.74■□□□□ 0.59
USF1-209ENST00000529476 U2AF1Q01081 240 aaKnown RBP eCLIP18.74■□□□□ 0.59
USF1-209ENST00000529476 DDB1Q16531 1140 aa18.74■□□□□ 0.59
USF1-209ENST00000529476 CAMKK2Q96RR4 588 aa18.74■□□□□ 0.59
USF1-209ENST00000529476 SHANK3Q9BYB0 1731 aa18.74■□□□□ 0.59
USF1-209ENST00000529476 TNS1Q9HBL0 1735 aaKnown RBP18.74■□□□□ 0.59
USF1-209ENST00000529476 TNS2Q63HR2 1409 aa18.74■□□□□ 0.59
USF1-209ENST00000529476 PKD1L3Q7Z443 1732 aa18.72■□□□□ 0.59
USF1-209ENST00000529476 EXOC5O00471 708 aa18.72■□□□□ 0.59
USF1-209ENST00000529476 PDE3BQ13370 1112 aa18.71■□□□□ 0.59
USF1-209ENST00000529476 ZCRB1Q8TBF4 217 aaKnown RBP18.7■□□□□ 0.58
USF1-209ENST00000529476 MRS2Q9HD23 443 aa18.7■□□□□ 0.58
USF1-209ENST00000529476 TRIM37O94972 964 aa18.69■□□□□ 0.58
USF1-209ENST00000529476 RSPH6AQ9H0K4 717 aa18.69■□□□□ 0.58
USF1-209ENST00000529476 MARCH10Q8NA82 808 aaPredicted RBP18.68■□□□□ 0.58
USF1-209ENST00000529476 DDX54Q8TDD1 881 aaKnown RBP18.68■□□□□ 0.58
USF1-209ENST00000529476 PRKAR2BP31323 418 aa18.67■□□□□ 0.58
USF1-209ENST00000529476 WDR43Q15061 677 aaKnown RBP eCLIP18.67■□□□□ 0.58
USF1-209ENST00000529476 SPG7Q9UQ90 795 aa18.67■□□□□ 0.58
USF1-209ENST00000529476 FCHSD2O94868 740 aa18.66■□□□□ 0.58
USF1-209ENST00000529476 MIER1Q8N108 512 aa18.66■□□□□ 0.58
USF1-209ENST00000529476 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.66■□□□□ 0.58
USF1-209ENST00000529476 PLEKHG2Q9H7P9 1386 aa18.66■□□□□ 0.58
USF1-209ENST00000529476 PLEKHO1Q53GL0 409 aaPredicted RBP18.65■□□□□ 0.58
USF1-209ENST00000529476 PCDH11XQ9BZA7 1347 aa18.65■□□□□ 0.58
USF1-209ENST00000529476 PCDH11YQ9BZA8 1340 aa18.65■□□□□ 0.58
USF1-209ENST00000529476 CYP27B1O15528 508 aa18.64■□□□□ 0.57
USF1-209ENST00000529476 APBA3O96018 575 aa18.64■□□□□ 0.57
USF1-209ENST00000529476 AMOTQ4VCS5 1084 aa18.64■□□□□ 0.57
USF1-209ENST00000529476 PHACTR3Q96KR7 559 aa18.64■□□□□ 0.57
USF1-209ENST00000529476 ADAMTS8Q9UP79 889 aa18.64■□□□□ 0.57
USF1-209ENST00000529476 PNISRQ8TF01 805 aaKnown RBP18.63■□□□□ 0.57
USF1-209ENST00000529476 MTHFSDQ2M296 383 aaKnown RBP18.62■□□□□ 0.57
USF1-209ENST00000529476 ZNF530Q6P9A1 599 aaPredicted RBP18.62■□□□□ 0.57
USF1-209ENST00000529476 FAM196AQ6ZSG2 479 aa18.62■□□□□ 0.57
USF1-209ENST00000529476 PLEKHF1Q96S99 279 aa18.62■□□□□ 0.57
USF1-209ENST00000529476 SBF2Q86WG5 1849 aa18.62■□□□□ 0.57
USF1-209ENST00000529476 PHKG2P15735 406 aa18.61■□□□□ 0.57
USF1-209ENST00000529476 CCER2I3L3R5 266 aa18.6■□□□□ 0.57
USF1-209ENST00000529476 CCDC146Q8IYE0 955 aa18.6■□□□□ 0.57
USF1-209ENST00000529476 IFNL2Q8IZJ0 200 aa18.6■□□□□ 0.57
USF1-209ENST00000529476 PPP1R1BQ9UD71 204 aaPredicted RBP18.6■□□□□ 0.57
USF1-209ENST00000529476 NUP188Q5SRE5 1749 aa18.6■□□□□ 0.57
USF1-209ENST00000529476 DOT1LQ8TEK3 1739 aa18.6■□□□□ 0.57
USF1-209ENST00000529476 RREB1Q92766 1687 aa18.6■□□□□ 0.57
USF1-209ENST00000529476 PNNQ9H307 717 aaKnown RBP18.59■□□□□ 0.57
USF1-209ENST00000529476 SPON1Q9HCB6 807 aa18.59■□□□□ 0.57
USF1-209ENST00000529476 KAT6BQ8WYB5 2073 aa18.59■□□□□ 0.57
USF1-209ENST00000529476 BCL9O00512 1426 aa18.58■□□□□ 0.57
USF1-209ENST00000529476 TOGARAM1Q9Y4F4 1720 aa18.58■□□□□ 0.57
USF1-209ENST00000529476 KCNQ2O43526 872 aa18.58■□□□□ 0.56
USF1-209ENST00000529476 C1orf141Q5JVX7 400 aa18.58■□□□□ 0.56
USF1-209ENST00000529476 VIRMAQ69YN4 1812 aaKnown RBP18.58■□□□□ 0.56
USF1-209ENST00000529476 MAPK8IP3Q9UPT6 1336 aa18.57■□□□□ 0.56
USF1-209ENST00000529476 DCAF8L1A6NGE4 600 aa18.57■□□□□ 0.56
USF1-209ENST00000529476 NEFMP07197 916 aa18.57■□□□□ 0.56
USF1-209ENST00000529476 NKX1-1Q15270 411 aaPredicted RBP18.57■□□□□ 0.56
USF1-209ENST00000529476 NBPF14Q5TI25 921 aa18.57■□□□□ 0.56
USF1-209ENST00000529476 GAS2L2Q8NHY3 880 aa18.57■□□□□ 0.56
USF1-209ENST00000529476 ACSBG1Q96GR2 724 aa18.57■□□□□ 0.56
USF1-209ENST00000529476 DLG5Q8TDM6 1919 aa18.57■□□□□ 0.56
USF1-209ENST00000529476 AKAP4Q5JQC9 854 aa18.56■□□□□ 0.56
USF1-209ENST00000529476 RUNDC1Q96C34 613 aa18.56■□□□□ 0.56
USF1-209ENST00000529476 NHSQ6T4R5 1651 aa18.56■□□□□ 0.56
USF1-209ENST00000529476 FAM9BQ8IZU0 186 aa18.55■□□□□ 0.56
USF1-209ENST00000529476 KDM6AO15550 1401 aaPredicted RBP18.55■□□□□ 0.56
USF1-209ENST00000529476 SCN11AQ9UI33 1791 aa18.55■□□□□ 0.56
USF1-209ENST00000529476 MAP3K5Q99683 1374 aa18.55■□□□□ 0.56
USF1-209ENST00000529476 ITGB4P16144 1822 aa18.54■□□□□ 0.56
USF1-209ENST00000529476 HSP90AB1P08238 724 aaKnown RBP18.54■□□□□ 0.56
USF1-209ENST00000529476 MPRIPQ6WCQ1 1025 aa18.54■□□□□ 0.56
USF1-209ENST00000529476 PTF1AQ7RTS3 328 aa18.54■□□□□ 0.56
USF1-209ENST00000529476 ZNF784Q8NCA9 323 aaPredicted RBP18.54■□□□□ 0.56
USF1-209ENST00000529476 PRIM1P49642 420 aaKnown RBP18.53■□□□□ 0.56
USF1-209ENST00000529476 ADAMTS7Q9UKP4 1686 aa18.53■□□□□ 0.56
USF1-209ENST00000529476 GNAT3A8MTJ3 354 aa18.52■□□□□ 0.56
USF1-209ENST00000529476 NFE2L2Q16236 605 aa18.52■□□□□ 0.56
USF1-209ENST00000529476 DCAF5Q96JK2 942 aa18.52■□□□□ 0.56
USF1-209ENST00000529476 LGR6Q9HBX8 967 aa18.52■□□□□ 0.56
USF1-209ENST00000529476 SYTL4Q96C24 671 aaPredicted RBP18.51■□□□□ 0.55
USF1-209ENST00000529476 RRP7AQ9Y3A4 280 aaKnown RBP18.51■□□□□ 0.55
USF1-209ENST00000529476 BTAF1O14981 1849 aa18.51■□□□□ 0.55
USF1-209ENST00000529476 SENP3-EIF4A1A0A087X0R7 540 aa18.5■□□□□ 0.55
USF1-209ENST00000529476 RNMTO43148 476 aaKnown RBP18.5■□□□□ 0.55
USF1-209ENST00000529476 TMPOP42166 694 aaKnown RBP18.5■□□□□ 0.55
USF1-209ENST00000529476 BCL11BQ9C0K0 894 aaPredicted RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms