RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 SPATA31A7Q8IWB4 1347 aa12.18□□□□□ -0.46
USP48-212ENST00000527823 EZH2Q15910 746 aaKnown RBP12.18□□□□□ -0.46
USP48-212ENST00000527823 TOPAZ1Q8N9V7 1692 aa12.18□□□□□ -0.46
USP48-212ENST00000527823 PARD3Q8TEW0 1356 aa12.18□□□□□ -0.46
USP48-212ENST00000527823 PARP4Q9UKK3 1724 aaKnown RBP12.17□□□□□ -0.46
USP48-212ENST00000527823 LMO7Q8WWI1 1683 aa12.17□□□□□ -0.46
USP48-212ENST00000527823 WNK3Q9BYP7 1800 aa12.17□□□□□ -0.46
USP48-212ENST00000527823 PSME1Q06323 249 aa12.17□□□□□ -0.46
USP48-212ENST00000527823 PDIA6Q15084 440 aa12.17□□□□□ -0.46
USP48-212ENST00000527823 DOK7Q18PE1 504 aa12.17□□□□□ -0.46
USP48-212ENST00000527823 LMOD2Q6P5Q4 547 aa12.17□□□□□ -0.46
USP48-212ENST00000527823 PCDHGA4Q9Y5G9 962 aa12.17□□□□□ -0.46
USP48-212ENST00000527823 ARHGEF28Q8N1W1 1705 aaKnown RBP12.17□□□□□ -0.46
USP48-212ENST00000527823 PEAK1Q9H792 1746 aa12.17□□□□□ -0.46
USP48-212ENST00000527823 TBC1D12O60347 775 aa12.16□□□□□ -0.46
USP48-212ENST00000527823 YY1P25490 414 aa12.16□□□□□ -0.46
USP48-212ENST00000527823 PPARGC1BQ86YN6 1023 aaKnown RBP12.16□□□□□ -0.46
USP48-212ENST00000527823 MYOM1P52179 1685 aa12.16□□□□□ -0.46
USP48-212ENST00000527823 SBF2Q86WG5 1849 aa12.16□□□□□ -0.46
USP48-212ENST00000527823 SPDYE16A6NNV3 312 aaPredicted RBP12.15□□□□□ -0.46
USP48-212ENST00000527823 PMFBP1Q8TBY8 1022 aa12.15□□□□□ -0.46
USP48-212ENST00000527823 CAMKK2Q96RR4 588 aa12.15□□□□□ -0.46
USP48-212ENST00000527823 LRRC37A3O60309 1634 aa12.15□□□□□ -0.47
USP48-212ENST00000527823 TESPA1A2RU30 521 aaPredicted RBP12.14□□□□□ -0.47
USP48-212ENST00000527823 EVI5O60447 810 aa12.14□□□□□ -0.47
USP48-212ENST00000527823 RGL3Q3MIN7 710 aa12.14□□□□□ -0.47
USP48-212ENST00000527823 SIRT1Q96EB6 747 aa12.14□□□□□ -0.47
USP48-212ENST00000527823 ATP7BP35670 1465 aa12.14□□□□□ -0.47
USP48-212ENST00000527823 PRR36Q9H6K5 1346 aa12.13□□□□□ -0.47
USP48-212ENST00000527823 ACIN1Q9UKV3 1341 aaKnown RBP12.13□□□□□ -0.47
USP48-212ENST00000527823 TRIM37O94972 964 aa12.13□□□□□ -0.47
USP48-212ENST00000527823 MLLT3P42568 568 aaPredicted RBP12.13□□□□□ -0.47
USP48-212ENST00000527823 SAFB2Q14151 953 aaKnown RBP eCLIP12.13□□□□□ -0.47
USP48-212ENST00000527823 ZNF710Q8N1W2 664 aa12.13□□□□□ -0.47
USP48-212ENST00000527823 KHSRPQ92945 711 aaKnown RBP eCLIP12.13□□□□□ -0.475e-7■□□□□ 11.2
USP48-212ENST00000527823 PRAM1Q96QH2 718 aa12.13□□□□□ -0.47
USP48-212ENST00000527823 SPATA31A1Q5TZJ5 1347 aa12.12□□□□□ -0.47
USP48-212ENST00000527823 ARSIQ5FYB1 569 aa12.12□□□□□ -0.47
USP48-212ENST00000527823 KIAA0232Q92628 1395 aa12.12□□□□□ -0.47
USP48-212ENST00000527823 NINLQ9Y2I6 1382 aa12.12□□□□□ -0.47
USP48-212ENST00000527823 DHX57Q6P158 1386 aaKnown RBP12.11□□□□□ -0.47
USP48-212ENST00000527823 RIMBP2O15034 1052 aa12.11□□□□□ -0.47
USP48-212ENST00000527823 SNPHO15079 494 aa12.11□□□□□ -0.47
USP48-212ENST00000527823 SSH2Q76I76 1423 aa12.11□□□□□ -0.47
USP48-212ENST00000527823 GPRASP1Q5JY77 1395 aa12.1□□□□□ -0.47
USP48-212ENST00000527823 C14orf93Q9H972 538 aaKnown RBP12.1□□□□□ -0.47
USP48-212ENST00000527823 PRDM11Q9NQV5 511 aa12.1□□□□□ -0.47
USP48-212ENST00000527823 EIF3AQ14152 1382 aaKnown RBP12.09□□□□□ -0.47
USP48-212ENST00000527823 CFAP70Q5T0N1 1121 aa12.09□□□□□ -0.47
USP48-212ENST00000527823 FAM196AQ6ZSG2 479 aa12.09□□□□□ -0.47
USP48-212ENST00000527823 CHD4Q14839 1912 aa12.09□□□□□ -0.47
USP48-212ENST00000527823 AKAP12Q02952 1782 aa12.08□□□□□ -0.48
USP48-212ENST00000527823 APBA3O96018 575 aa12.08□□□□□ -0.48
USP48-212ENST00000527823 GPR153Q6NV75 609 aa12.08□□□□□ -0.48
USP48-212ENST00000527823 GRXCR2A6NFK2 248 aa12.07□□□□□ -0.48
USP48-212ENST00000527823 NUDT7P0C024 238 aa12.07□□□□□ -0.48
USP48-212ENST00000527823 DDX12PQ92771 950 aa12.07□□□□□ -0.48
USP48-212ENST00000527823 HIRIP3Q9BW71 556 aaPredicted RBP12.07□□□□□ -0.48
USP48-212ENST00000527823 ZNF316A6NFI3 1004 aaPredicted RBP12.06□□□□□ -0.48
USP48-212ENST00000527823 CHRNA2Q15822 529 aa12.06□□□□□ -0.48
USP48-212ENST00000527823 ZSWIM6Q9HCJ5 1215 aa12.06□□□□□ -0.48
USP48-212ENST00000527823 STRN4Q9NRL3 753 aa12.06□□□□□ -0.48
USP48-212ENST00000527823 TULP1O00294 542 aaPredicted RBP12.05□□□□□ -0.48
USP48-212ENST00000527823 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.05□□□□□ -0.48
USP48-212ENST00000527823 ANO8Q9HCE9 1232 aaPredicted RBP12.05□□□□□ -0.48
USP48-212ENST00000527823 COL5A2P05997 1499 aaPredicted RBP12.05□□□□□ -0.48
USP48-212ENST00000527823 MINK1Q8N4C8 1332 aaPredicted RBP12.05□□□□□ -0.48
USP48-212ENST00000527823 SMYD5Q6GMV2 418 aa12.04□□□□□ -0.48
USP48-212ENST00000527823 SPON1Q9HCB6 807 aa12.04□□□□□ -0.48
USP48-212ENST00000527823 POGKQ9P215 609 aa12.04□□□□□ -0.48
USP48-212ENST00000527823 OVOS2A0A0G2JMS6 1433 aa12.03□□□□□ -0.48
USP48-212ENST00000527823 OVOS2A0A0J9YW53 1432 aa12.03□□□□□ -0.48
USP48-212ENST00000527823 OVOS2Q6IE36 1432 aa12.03□□□□□ -0.48
USP48-212ENST00000527823 KCNQ2O43526 872 aa12.03□□□□□ -0.48
USP48-212ENST00000527823 BARGINQ6ZT62 677 aa12.03□□□□□ -0.48
USP48-212ENST00000527823 MPHOSPH9Q99550 1183 aa12.03□□□□□ -0.48
USP48-212ENST00000527823 USP35Q9P2H5 1018 aa12.03□□□□□ -0.48
USP48-212ENST00000527823 PPP1R1BQ9UD71 204 aaPredicted RBP12.03□□□□□ -0.48
USP48-212ENST00000527823 PTGER2P43116 358 aa12.02□□□□□ -0.49
USP48-212ENST00000527823 CPDO75976 1380 aa12.02□□□□□ -0.49
USP48-212ENST00000527823 PAPPAQ13219 1627 aa12.01□□□□□ -0.49
USP48-212ENST00000527823 COL18A1P39060 1754 aa12.01□□□□□ -0.49
USP48-212ENST00000527823 WASLO00401 505 aaPredicted RBP12.01□□□□□ -0.49
USP48-212ENST00000527823 NBPF8Q3BBV2 869 aa12.01□□□□□ -0.49
USP48-212ENST00000527823 NBPF14Q5TI25 921 aa12.01□□□□□ -0.49
USP48-212ENST00000527823 TRAK1Q9UPV9 953 aa12.01□□□□□ -0.49
USP48-212ENST00000527823 POLR3AO14802 1390 aaPredicted RBP12.01□□□□□ -0.49
USP48-212ENST00000527823 GOLGB1Q14789 3259 aaKnown RBP12□□□□□ -0.49
USP48-212ENST00000527823 ZC3H6P61129 1189 aaKnown RBP12□□□□□ -0.49
USP48-212ENST00000527823 RBM26Q5T8P6 1007 aaKnown RBP12□□□□□ -0.49
USP48-212ENST00000527823 LARP1Q6PKG0 1096 aaKnown RBP12□□□□□ -0.49
USP48-212ENST00000527823 NGDNQ8NEJ9 315 aaKnown RBP12□□□□□ -0.49
USP48-212ENST00000527823 USP19O94966 1318 aa12□□□□□ -0.49
USP48-212ENST00000527823 SLIT3O75094 1523 aa12□□□□□ -0.49
USP48-212ENST00000527823 PIK3C2AO00443 1686 aa12□□□□□ -0.49
USP48-212ENST00000527823 CEP350Q5VT06 3117 aa12□□□□□ -0.49
USP48-212ENST00000527823 HOXB1P14653 301 aaPredicted RBP11.99□□□□□ -0.49
USP48-212ENST00000527823 PDE3BQ13370 1112 aa11.99□□□□□ -0.49
USP48-212ENST00000527823 NUTM2GQ5VZR2 741 aa11.99□□□□□ -0.49
USP48-212ENST00000527823 ZNF784Q8NCA9 323 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms