RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 TSPY1Q01534 308 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 PPP4R3AQ6IN85 833 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 ZKSCAN4Q969J2 545 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 UIMC1Q96RL1 719 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 GADD45BO75293 160 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 NFX1Q12986 1120 aaKnown RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 ANKRD18AQ8IVF6 992 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC155Q8N6L0 562 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 NGDNQ8NEJ9 315 aaKnown RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 RTF1Q92541 710 aaKnown RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 NUCKS1Q9H1E3 243 aaKnown RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 SEPT11Q9NVA2 429 aaKnown RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 IQCA1LA6NCM1 817 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 COLEC12Q5KU26 742 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 KCNH4Q9UQ05 1017 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 SLFN14P0C7P3 912 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 PTPAQ15257 358 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 CERKQ8TCT0 537 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 PRG4Q92954 1404 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 SRGAP2CP0DJJ0 459 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 MLLT1Q03111 559 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-207ENST00000493303 C1orf141Q5JVX7 400 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 TTC5Q8N0Z6 440 aa4.37□□□□□ -1.71
CSMD3-207ENST00000493303 TNNI2P48788 182 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC144BQ3MJ40 725 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC158Q5M9N0 1113 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 ERICH6BQ5W0A0 696 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 TNS1Q9HBL0 1735 aaKnown RBP4.36□□□□□ -1.71
CSMD3-207ENST00000493303 CA12O43570 354 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 APOBRQ0VD83 1088 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 ODR4Q5SWX8 454 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 SAP130Q9H0E3 1048 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 ATP10BO94823 1461 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 CTCFP49711 727 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-207ENST00000493303 VPS37DQ86XT2 251 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 SLF2Q8IX21 1173 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 USP26Q9BXU7 913 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 ANKFY1Q9P2R3 1169 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 WWC3Q9ULE0 1092 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 SAMD9LQ8IVG5 1584 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 TNNT3P45378 269 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-207ENST00000493303 AKAP4Q5JQC9 854 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 PPP4R3BQ5MIZ7 849 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 MFSD1Q9H3U5 465 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 EHMT1Q9H9B1 1298 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 WRNQ14191 1432 aaPredicted RBP eCLIP4.36□□□□□ -1.71
CSMD3-207ENST00000493303 NSD3Q9BZ95 1437 aa4.36□□□□□ -1.71
CSMD3-207ENST00000493303 WNK3Q9BYP7 1800 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 TRPM1Q7Z4N2 1603 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 PABPN1LA6NDY0 278 aaKnown RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 PYGBP11216 843 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 PAX3P23760 479 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 UTP14CQ5TAP6 766 aaKnown RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 TPTE2Q6XPS3 522 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 NKX2-3Q8TAU0 364 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 FOXD4L1Q9NU39 408 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 CAMSAP1Q5T5Y3 1602 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 KIF3CO14782 793 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 TRPC5Q9UL62 973 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 IFT172Q9UG01 1749 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 SMG6Q86US8 1419 aaKnown RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 GPATCH8Q9UKJ3 1502 aaKnown RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 CETN3O15182 167 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 MAP3K7O43318 606 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 NBPF12Q5TAG4 269 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 CDC37L1Q7L3B6 337 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 DTNBP1Q96EV8 351 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 OXCT2Q9BYC2 517 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 AKNAQ7Z591 1439 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 ZFP91Q96JP5 570 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 SECISBP2Q96T21 854 aaKnown RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 ABCC3O15438 1527 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 TLR3O15455 904 aaKnown RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 MAP2K1Q02750 393 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-207ENST00000493303 NUDT18Q6ZVK8 323 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 SMC1BQ8NDV3 1235 aa4.35□□□□□ -1.71
CSMD3-207ENST00000493303 ANKRD30BQ9BXX2 1392 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 HSP90AB1P08238 724 aaKnown RBP4.34□□□□□ -1.71
CSMD3-207ENST00000493303 ZNF569Q5MCW4 686 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 CASC1Q6TDU7 716 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 FILIP1Q7Z7B0 1213 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.34□□□□□ -1.71
CSMD3-207ENST00000493303 NOD1Q9Y239 953 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 ZFYVE16Q7Z3T8 1539 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 ARHGEF5Q12774 1597 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 ZPR1O75312 459 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 NR1I2O75469 434 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 FMNL1O95466 1100 aaPredicted RBP4.34□□□□□ -1.71
CSMD3-207ENST00000493303 IRAK1BP1Q5VVH5 260 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 ISLR2Q6UXK2 745 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC26Q8TAB7 109 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 PRPF31Q8WWY3 499 aaKnown RBP4.34□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC102AQ96A19 550 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 PRDM15P57071 1507 aaPredicted RBP4.34□□□□□ -1.71
CSMD3-207ENST00000493303 KLHL41O60662 606 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 C6P13671 934 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 TAF12Q16514 161 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 CCDC129Q6ZRS4 1044 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 PIK3R5Q8WYR1 880 aa4.34□□□□□ -1.71
CSMD3-207ENST00000493303 SMARCC1Q92922 1105 aaPredicted RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms