RNA–Protein interactions for RNA: ENST00000477819.1

PTPRN-214, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-214ENST00000477819 TXNRD1Q16881 649 aa11.29□□□□□ -0.6
PTPRN-214ENST00000477819 SLAIN1Q8ND83 568 aa11.29□□□□□ -0.6
PTPRN-214ENST00000477819 FAM163AQ96GL9 167 aaPredicted RBP11.29□□□□□ -0.6
PTPRN-214ENST00000477819 THRAP3Q9Y2W1 955 aaKnown RBP11.29□□□□□ -0.6
PTPRN-214ENST00000477819 WASLO00401 505 aaPredicted RBP11.28□□□□□ -0.6
PTPRN-214ENST00000477819 LCE2DQ5TA82 110 aaPredicted RBP11.28□□□□□ -0.6
PTPRN-214ENST00000477819 POTEGQ6S5H5 508 aa11.28□□□□□ -0.6
PTPRN-214ENST00000477819 PDCD7Q8N8D1 485 aaKnown RBP11.28□□□□□ -0.6
PTPRN-214ENST00000477819 MARCH10Q8NA82 808 aaPredicted RBP11.28□□□□□ -0.6
PTPRN-214ENST00000477819 TRAK1Q9UPV9 953 aa11.28□□□□□ -0.6
PTPRN-214ENST00000477819 LMO7Q8WWI1 1683 aa11.27□□□□□ -0.6
PTPRN-214ENST00000477819 TULP4Q9NRJ4 1543 aa11.27□□□□□ -0.61
PTPRN-214ENST00000477819 C11orf95C9JLR9 678 aaPredicted RBP11.27□□□□□ -0.61
PTPRN-214ENST00000477819 DDB1Q16531 1140 aa11.27□□□□□ -0.61
PTPRN-214ENST00000477819 CABP2Q9NPB3 220 aa11.27□□□□□ -0.61
PTPRN-214ENST00000477819 ATP7BP35670 1465 aa11.26□□□□□ -0.61
PTPRN-214ENST00000477819 ZBTB7CA1YPR0 619 aa11.26□□□□□ -0.61
PTPRN-214ENST00000477819 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.26□□□□□ -0.61
PTPRN-214ENST00000477819 LRRC37A3O60309 1634 aa11.26□□□□□ -0.61
PTPRN-214ENST00000477819 MAP3K5Q99683 1374 aa11.26□□□□□ -0.61
PTPRN-214ENST00000477819 NUDT16Q96DE0 195 aaKnown RBP11.25□□□□□ -0.61
PTPRN-214ENST00000477819 COL5A2P05997 1499 aaPredicted RBP11.25□□□□□ -0.61
PTPRN-214ENST00000477819 HSPA6P17066 643 aa11.24□□□□□ -0.61
PTPRN-214ENST00000477819 ABTB2Q8N961 1025 aa11.24□□□□□ -0.61
PTPRN-214ENST00000477819 NLGN2Q8NFZ4 835 aa11.24□□□□□ -0.61
PTPRN-214ENST00000477819 CPDO75976 1380 aa11.24□□□□□ -0.61
PTPRN-214ENST00000477819 EIF3AQ14152 1382 aaKnown RBP11.24□□□□□ -0.61
PTPRN-214ENST00000477819 CRB1P82279 1406 aa11.24□□□□□ -0.61
PTPRN-214ENST00000477819 GCP02774 474 aa11.22□□□□□ -0.61
PTPRN-214ENST00000477819 ACEP12821 1306 aa11.22□□□□□ -0.61
PTPRN-214ENST00000477819 YBX3P16989 372 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTPRN-214ENST00000477819 ZNF827Q17R98 1081 aa11.22□□□□□ -0.61
PTPRN-214ENST00000477819 TOM1L2Q6ZVM7 507 aa11.22□□□□□ -0.61
PTPRN-214ENST00000477819 ATP10DQ9P241 1426 aa11.22□□□□□ -0.61
PTPRN-214ENST00000477819 USP19O94966 1318 aa11.21□□□□□ -0.61
PTPRN-214ENST00000477819 RNF25Q96BH1 459 aaPredicted RBP11.21□□□□□ -0.61
PTPRN-214ENST00000477819 AKAP12Q02952 1782 aa11.21□□□□□ -0.62
PTPRN-214ENST00000477819 ADGRB1O14514 1584 aa11.2□□□□□ -0.62
PTPRN-214ENST00000477819 ZNF526Q8TF50 670 aaPredicted RBP11.2□□□□□ -0.62
PTPRN-214ENST00000477819 KAT6BQ8WYB5 2073 aa11.2□□□□□ -0.62
PTPRN-214ENST00000477819 ITSN1Q15811 1721 aa11.19□□□□□ -0.62
PTPRN-214ENST00000477819 ACSBG1Q96GR2 724 aa11.19□□□□□ -0.62
PTPRN-214ENST00000477819 MPHOSPH9Q99550 1183 aa11.19□□□□□ -0.62
PTPRN-214ENST00000477819 CDK19Q9BWU1 502 aa11.19□□□□□ -0.62
PTPRN-214ENST00000477819 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.19□□□□□ -0.62
PTPRN-214ENST00000477819 BCL9O00512 1426 aa11.18□□□□□ -0.62
PTPRN-214ENST00000477819 POLR3AO14802 1390 aaPredicted RBP11.18□□□□□ -0.62
PTPRN-214ENST00000477819 DPY19L2Q6NUT2 758 aa11.18□□□□□ -0.62
PTPRN-214ENST00000477819 GPBP1L1Q9HC44 474 aaPredicted RBP11.18□□□□□ -0.62
PTPRN-214ENST00000477819 AXIN2Q9Y2T1 843 aa11.18□□□□□ -0.62
PTPRN-214ENST00000477819 AATKQ6ZMQ8 1374 aa11.17□□□□□ -0.62
PTPRN-214ENST00000477819 PAPPAQ13219 1627 aa11.17□□□□□ -0.62
PTPRN-214ENST00000477819 WNK3Q9BYP7 1800 aa11.17□□□□□ -0.62
PTPRN-214ENST00000477819 NLRP13Q86W25 1043 aa11.17□□□□□ -0.62
PTPRN-214ENST00000477819 LRRC4BQ9NT99 713 aa11.17□□□□□ -0.62
PTPRN-214ENST00000477819 RIOK3O14730 519 aaKnown RBP11.16□□□□□ -0.62
PTPRN-214ENST00000477819 GRIN3BO60391 1043 aa11.16□□□□□ -0.62
PTPRN-214ENST00000477819 POLD1P28340 1107 aa11.16□□□□□ -0.62
PTPRN-214ENST00000477819 C3orf67Q6ZVT6 689 aa11.16□□□□□ -0.62
PTPRN-214ENST00000477819 PLSCR2Q9NRY7 297 aa11.16□□□□□ -0.62
PTPRN-214ENST00000477819 WDR17Q8IZU2 1322 aa11.15□□□□□ -0.62
PTPRN-214ENST00000477819 TOPAZ1Q8N9V7 1692 aa11.15□□□□□ -0.62
PTPRN-214ENST00000477819 PLEKHG3A1L390 1219 aa11.15□□□□□ -0.62
PTPRN-214ENST00000477819 EXOC5O00471 708 aa11.15□□□□□ -0.62
PTPRN-214ENST00000477819 EFCAB3Q8N7B9 438 aa11.15□□□□□ -0.62
PTPRN-214ENST00000477819 L3MBTL3Q96JM7 780 aaPredicted RBP11.15□□□□□ -0.62
PTPRN-214ENST00000477819 KDM2AQ9Y2K7 1162 aa11.15□□□□□ -0.62
PTPRN-214ENST00000477819 COL18A1P39060 1754 aa11.14□□□□□ -0.63
PTPRN-214ENST00000477819 COL13A1Q5TAT6 717 aaPredicted RBP11.14□□□□□ -0.63
PTPRN-214ENST00000477819 CDCA7Q9BWT1 371 aaPredicted RBP11.14□□□□□ -0.63
PTPRN-214ENST00000477819 RGPD5Q99666 1765 aa11.13□□□□□ -0.63
PTPRN-214ENST00000477819 PNPLA7Q6ZV29 1317 aa11.13□□□□□ -0.63
PTPRN-214ENST00000477819 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.13□□□□□ -0.63
PTPRN-214ENST00000477819 KCNQ4P56696 695 aa11.13□□□□□ -0.63
PTPRN-214ENST00000477819 DNAJC5GQ8N7S2 189 aa11.13□□□□□ -0.63
PTPRN-214ENST00000477819 SLC16A10Q8TF71 515 aa11.13□□□□□ -0.63
PTPRN-214ENST00000477819 ZFP91Q96JP5 570 aaPredicted RBP11.13□□□□□ -0.63
PTPRN-214ENST00000477819 NHSQ6T4R5 1651 aa11.13□□□□□ -0.63
PTPRN-214ENST00000477819 PCNTO95613 3336 aa11.12□□□□□ -0.63
PTPRN-214ENST00000477819 COL24A1Q17RW2 1714 aa11.12□□□□□ -0.63
PTPRN-214ENST00000477819 BTAF1O14981 1849 aa11.12□□□□□ -0.63
PTPRN-214ENST00000477819 CSB-PGBD3P0DP91 1061 aa11.12□□□□□ -0.63
PTPRN-214ENST00000477819 NLRP6P59044 892 aa11.12□□□□□ -0.63
PTPRN-214ENST00000477819 CARD10Q9BWT7 1032 aa11.12□□□□□ -0.63
PTPRN-214ENST00000477819 ARHGEF28Q8N1W1 1705 aaKnown RBP11.12□□□□□ -0.63
PTPRN-214ENST00000477819 USP6P35125 1406 aa11.11□□□□□ -0.63
PTPRN-214ENST00000477819 ST18O60284 1047 aa11.11□□□□□ -0.63
PTPRN-214ENST00000477819 ADCY9O60503 1353 aa11.11□□□□□ -0.63
PTPRN-214ENST00000477819 TUBGCP6Q96RT7 1819 aa11.11□□□□□ -0.63
PTPRN-214ENST00000477819 KIF3CO14782 793 aa11.1□□□□□ -0.63
PTPRN-214ENST00000477819 SOX12O15370 315 aa11.1□□□□□ -0.63
PTPRN-214ENST00000477819 TFCP2L1Q9NZI6 479 aa11.1□□□□□ -0.63
PTPRN-214ENST00000477819 BRD4O60885 1362 aaPredicted RBP11.09□□□□□ -0.63
PTPRN-214ENST00000477819 APLP1P51693 650 aa11.09□□□□□ -0.63
PTPRN-214ENST00000477819 MSL1Q68DK7 614 aa11.09□□□□□ -0.63
PTPRN-214ENST00000477819 DCAF11Q8TEB1 546 aa11.09□□□□□ -0.63
PTPRN-214ENST00000477819 WWC3Q9ULE0 1092 aa11.09□□□□□ -0.63
PTPRN-214ENST00000477819 SLIT3O75094 1523 aa11.09□□□□□ -0.63
PTPRN-214ENST00000477819 TNS2Q63HR2 1409 aa11.09□□□□□ -0.63
PTPRN-214ENST00000477819 QSER1Q2KHR3 1735 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms