RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FBXO45P0C2W1 286 aa9.22□□□□□ -0.93
CCDC88A-212ENST00000474059 IRS1P35568 1242 aa9.22□□□□□ -0.93
CCDC88A-212ENST00000474059 SRSF11Q05519 484 aaKnown RBP9.22□□□□□ -0.93
CCDC88A-212ENST00000474059 CELA2BP08218 269 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-212ENST00000474059 PRICKLE2Q7Z3G6 844 aa9.21□□□□□ -0.94
CCDC88A-212ENST00000474059 DBN1Q16643 649 aa9.19□□□□□ -0.94
CCDC88A-212ENST00000474059 DNMT3AQ9Y6K1 912 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-212ENST00000474059 ZBBXA8MT70 800 aa9.18□□□□□ -0.94
CCDC88A-212ENST00000474059 GPR25O00155 361 aa9.18□□□□□ -0.94
CCDC88A-212ENST00000474059 ITGB2P05107 769 aa9.18□□□□□ -0.94
CCDC88A-212ENST00000474059 SCTRP47872 440 aa9.18□□□□□ -0.94
CCDC88A-212ENST00000474059 ERVK-9P63128 1117 aa9.18□□□□□ -0.94
CCDC88A-212ENST00000474059 PNMA1Q8ND90 353 aa9.18□□□□□ -0.94
CCDC88A-212ENST00000474059 GOPCQ9HD26 462 aa9.18□□□□□ -0.94
CCDC88A-212ENST00000474059 A0A1W2PRU2 124 aa9.17□□□□□ -0.94
CCDC88A-212ENST00000474059 ATP5J2-PTCD1G3V325 749 aa9.17□□□□□ -0.94
CCDC88A-212ENST00000474059 TRIM22Q8IYM9 498 aa9.17□□□□□ -0.94
CCDC88A-212ENST00000474059 ATP1B4Q9UN42 357 aaPredicted RBP9.17□□□□□ -0.94
CCDC88A-212ENST00000474059 THBS1P07996 1170 aa9.16□□□□□ -0.94
CCDC88A-212ENST00000474059 PCDHB9Q9Y5E1 797 aa9.16□□□□□ -0.94
CCDC88A-212ENST00000474059 GPC1P35052 558 aa9.15□□□□□ -0.94
CCDC88A-212ENST00000474059 POU4F2Q12837 409 aa9.14□□□□□ -0.95
CCDC88A-212ENST00000474059 GPAT2Q6NUI2 795 aa9.14□□□□□ -0.95
CCDC88A-212ENST00000474059 KANK3Q6NY19 840 aa9.14□□□□□ -0.95
CCDC88A-212ENST00000474059 GRIP2Q9C0E4 1043 aa9.14□□□□□ -0.95
CCDC88A-212ENST00000474059 OSBPL3Q9H4L5 887 aa9.14□□□□□ -0.95
CCDC88A-212ENST00000474059 MBIPQ9NS73 344 aa9.14□□□□□ -0.95
CCDC88A-212ENST00000474059 IGF1RP08069 1367 aa9.13□□□□□ -0.95
CCDC88A-212ENST00000474059 MEN1O00255 615 aa9.13□□□□□ -0.95
CCDC88A-212ENST00000474059 TRAK2O60296 914 aa9.13□□□□□ -0.95
CCDC88A-212ENST00000474059 MARSP56192 900 aaKnown RBP9.13□□□□□ -0.95
CCDC88A-212ENST00000474059 TMEM259Q4ZIN3 620 aa9.13□□□□□ -0.95
CCDC88A-212ENST00000474059 CC2D2BQ6DHV5 1058 aa9.13□□□□□ -0.95
CCDC88A-212ENST00000474059 ACDQ96AP0 544 aa9.13□□□□□ -0.95
CCDC88A-212ENST00000474059 DYRK1BQ9Y463 629 aa9.13□□□□□ -0.95
CCDC88A-212ENST00000474059 CLN3Q13286 438 aa9.12□□□□□ -0.95
CCDC88A-212ENST00000474059 GTPBP3Q969Y2 492 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-212ENST00000474059 NBPF10Q6P3W6 841 aaKnown RBP9.11□□□□□ -0.95
CCDC88A-212ENST00000474059 NBPF15Q8N660 670 aa9.11□□□□□ -0.95
CCDC88A-212ENST00000474059 SCARF2Q96GP6 870 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-212ENST00000474059 GMCL1Q96IK5 515 aa9.11□□□□□ -0.95
CCDC88A-212ENST00000474059 CNTNAP5Q8WYK1 1306 aa9.1□□□□□ -0.95
CCDC88A-212ENST00000474059 SPATA31C2B4DYI2 1134 aa9.1□□□□□ -0.95
CCDC88A-212ENST00000474059 PCMTD1Q96MG8 357 aaPredicted RBP9.1□□□□□ -0.95
CCDC88A-212ENST00000474059 NR1H3Q13133 447 aa9.09□□□□□ -0.95
CCDC88A-212ENST00000474059 RIPOR1Q6ZS17 1223 aa9.09□□□□□ -0.95
CCDC88A-212ENST00000474059 MTMR14Q8NCE2 650 aa9.09□□□□□ -0.95
CCDC88A-212ENST00000474059 HRH3Q9Y5N1 445 aa9.09□□□□□ -0.95
CCDC88A-212ENST00000474059 MAP3K10Q02779 954 aa9.08□□□□□ -0.96
CCDC88A-212ENST00000474059 ARHGEF10LQ9HCE6 1279 aa9.08□□□□□ -0.96
CCDC88A-212ENST00000474059 IL2RAP01589 272 aa9.07□□□□□ -0.96
CCDC88A-212ENST00000474059 IGHA1P01876 353 aa9.07□□□□□ -0.96
CCDC88A-212ENST00000474059 BCRP11274 1271 aa9.07□□□□□ -0.96
CCDC88A-212ENST00000474059 DCAF5Q96JK2 942 aa9.07□□□□□ -0.96
CCDC88A-212ENST00000474059 FOXK2Q01167 660 aa9.06□□□□□ -0.96
CCDC88A-212ENST00000474059 UBAP2LQ14157 1087 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-212ENST00000474059 PLA2G4EQ3MJ16 856 aa9.06□□□□□ -0.96
CCDC88A-212ENST00000474059 CYP2U1Q7Z449 544 aa9.06□□□□□ -0.96
CCDC88A-212ENST00000474059 CCDC125Q86Z20 511 aa9.06□□□□□ -0.96
CCDC88A-212ENST00000474059 GAS2L1Q99501 681 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-212ENST00000474059 RAB6BQ9NRW1 208 aa9.06□□□□□ -0.96
CCDC88A-212ENST00000474059 PCDHB11Q9Y5F2 797 aa9.06□□□□□ -0.96
CCDC88A-212ENST00000474059 WDR44Q5JSH3 913 aa9.05□□□□□ -0.96
CCDC88A-212ENST00000474059 IL27Q8NEV9 243 aa9.05□□□□□ -0.96
CCDC88A-212ENST00000474059 CDCA7Q9BWT1 371 aaPredicted RBP9.05□□□□□ -0.96
CCDC88A-212ENST00000474059 SLC27A3Q5K4L6 730 aa9.04□□□□□ -0.96
CCDC88A-212ENST00000474059 RNF20Q5VTR2 975 aa9.04□□□□□ -0.96
CCDC88A-212ENST00000474059 CCDC85AQ96PX6 553 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-212ENST00000474059 FHDC1Q9C0D6 1143 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-212ENST00000474059 WASLO00401 505 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-212ENST00000474059 SOCS7O14512 581 aa9.03□□□□□ -0.96
CCDC88A-212ENST00000474059 PROCP04070 461 aa9.03□□□□□ -0.96
CCDC88A-212ENST00000474059 C1orf229Q6ZS94 237 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-212ENST00000474059 NLRP3Q96P20 1036 aa9.03□□□□□ -0.96
CCDC88A-212ENST00000474059 SNRKQ9NRH2 765 aa9.03□□□□□ -0.96
CCDC88A-212ENST00000474059 H7C1W4 665 aa9.02□□□□□ -0.97
CCDC88A-212ENST00000474059 F11P03951 625 aa9.02□□□□□ -0.97
CCDC88A-212ENST00000474059 TAS1R3Q7RTX0 852 aa9.02□□□□□ -0.97
CCDC88A-212ENST00000474059 NUCKS1Q9H1E3 243 aaKnown RBP9.02□□□□□ -0.97
CCDC88A-212ENST00000474059 TIMMDC1Q9NPL8 285 aa9.02□□□□□ -0.97
CCDC88A-212ENST00000474059 OIP5O43482 229 aa9.01□□□□□ -0.97
CCDC88A-212ENST00000474059 SPOCK3Q9BQ16 436 aa9.01□□□□□ -0.97
CCDC88A-212ENST00000474059 ESYT1Q9BSJ8 1104 aa9.01□□□□□ -0.97
CCDC88A-212ENST00000474059 ENAMQ9NRM1 1142 aa9.01□□□□□ -0.97
CCDC88A-212ENST00000474059 LRRC4BQ9NT99 713 aa9.01□□□□□ -0.97
CCDC88A-212ENST00000474059 SHISA8B8ZZ34 492 aa9□□□□□ -0.97
CCDC88A-212ENST00000474059 MX2P20592 715 aa9□□□□□ -0.97
CCDC88A-212ENST00000474059 MCCD1P59942 119 aaPredicted RBP9□□□□□ -0.97
CCDC88A-212ENST00000474059 SNRPNP63162 240 aaKnown RBP9□□□□□ -0.97
CCDC88A-212ENST00000474059 CENPCQ03188 943 aa9□□□□□ -0.97
CCDC88A-212ENST00000474059 TSGA10IPQ3SY00 556 aa9□□□□□ -0.97
CCDC88A-212ENST00000474059 FOXR1Q6PIV2 292 aa9□□□□□ -0.97
CCDC88A-212ENST00000474059 BANK1Q8NDB2 785 aa9□□□□□ -0.97
CCDC88A-212ENST00000474059 CNKSR1Q969H4 720 aa9□□□□□ -0.97
CCDC88A-212ENST00000474059 STAU1O95793 577 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-212ENST00000474059 HOXB4P17483 251 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-212ENST00000474059 TRIM52Q96A61 297 aa8.99□□□□□ -0.97
CCDC88A-212ENST00000474059 XAGE2Q96GT9 111 aa8.99□□□□□ -0.97
CCDC88A-212ENST00000474059 BCANQ96GW7 911 aa8.99□□□□□ -0.97
CCDC88A-212ENST00000474059 TRERF1Q96PN7 1200 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms