RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 U2AF2P26368 475 aaKnown RBP eCLIP10.49□□□□□ -0.73
COL6A3-210ENST00000473258 MAP7Q14244 749 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 ZKSCAN8Q15776 578 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-210ENST00000473258 MAP3K11Q16584 847 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 IMMTQ16891 758 aaKnown RBP10.49□□□□□ -0.73
COL6A3-210ENST00000473258 NSRP1Q9H0G5 558 aaKnown RBP10.49□□□□□ -0.73
COL6A3-210ENST00000473258 MTUS2Q5JR59 1369 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 KRT85P78386 507 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 PRKRIP1Q9H875 184 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-210ENST00000473258 RAI14Q9P0K7 980 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 CCDC196A0A1B0GTZ2 297 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 ADCY5O95622 1261 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 NEK4P51957 841 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 GSDMDP57764 484 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 CCDC83Q8IWF9 413 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 DACH1Q9UI36 760 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 JRKLQ9Y4A0 524 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 ANKRD18BA2A2Z9 1011 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 MAP7D1Q3KQU3 841 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 CCDC38Q502W7 563 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 GTF3C6Q969F1 213 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.48□□□□□ -0.73
COL6A3-210ENST00000473258 SATB2Q9UPW6 733 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 ERCC6Q03468 1493 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 SMTNL1A8MU46 457 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 U2AF1L5P0DN76 240 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-210ENST00000473258 U2AF1Q01081 240 aaKnown RBP eCLIP10.48□□□□□ -0.73
COL6A3-210ENST00000473258 ZSCAN26Q16670 478 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 MAGEC2Q9UBF1 373 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-210ENST00000473258 MKRN1Q9UHC7 482 aaKnown RBP10.48□□□□□ -0.73
COL6A3-210ENST00000473258 OPA1O60313 960 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 UBE4AQ14139 1066 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 PDCD7Q8N8D1 485 aaKnown RBP10.48□□□□□ -0.73
COL6A3-210ENST00000473258 TAF4BQ92750 862 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 TRIM4Q9C037 500 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 MORC4Q8TE76 937 aa10.48□□□□□ -0.73
COL6A3-210ENST00000473258 HSF2BPO75031 334 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 EPS15P42566 896 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 ARMCX6Q7L4S7 300 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 TSPYL2Q9H2G4 693 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-210ENST00000473258 ZC4H2Q9NQZ6 224 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 TSNAXIP1Q2TAA8 658 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 ICE2Q659A1 982 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 CACNA2D3Q8IZS8 1091 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 PPP1R15AO75807 674 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-210ENST00000473258 ARHGAP25P42331 645 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 EIF5P55010 431 aaKnown RBP10.47□□□□□ -0.73
COL6A3-210ENST00000473258 DDX12PQ92771 950 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 LNPKQ9C0E8 428 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 PAFAH1B1P43034 410 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 MIER3Q7Z3K6 550 aa10.47□□□□□ -0.73
COL6A3-210ENST00000473258 SEPT11Q9NVA2 429 aaKnown RBP10.47□□□□□ -0.73
COL6A3-210ENST00000473258 TUBB4AP04350 444 aa10.46□□□□□ -0.73
COL6A3-210ENST00000473258 SLMAPQ14BN4 828 aa10.46□□□□□ -0.73
COL6A3-210ENST00000473258 SAFBQ15424 915 aaKnown RBP eCLIP10.46□□□□□ -0.73
COL6A3-210ENST00000473258 CCDC183Q5T5S1 534 aa10.46□□□□□ -0.73
COL6A3-210ENST00000473258 UIMC1Q96RL1 719 aa10.46□□□□□ -0.73
COL6A3-210ENST00000473258 MAATS1Q7Z4T9 603 aa10.46□□□□□ -0.73
COL6A3-210ENST00000473258 ZNF396Q96N95 335 aaPredicted RBP10.46□□□□□ -0.73
COL6A3-210ENST00000473258 CFAP100Q494V2 611 aa10.46□□□□□ -0.74
COL6A3-210ENST00000473258 MYRIPQ8NFW9 859 aa10.46□□□□□ -0.74
COL6A3-210ENST00000473258 STAC3Q96MF2 364 aa10.46□□□□□ -0.74
COL6A3-210ENST00000473258 SPAG9O60271 1321 aaKnown RBP10.46□□□□□ -0.74
COL6A3-210ENST00000473258 RNF8O76064 485 aa10.46□□□□□ -0.74
COL6A3-210ENST00000473258 WWC2Q6AWC2 1192 aa10.45□□□□□ -0.74
COL6A3-210ENST00000473258 USP6NLQ92738 828 aa10.45□□□□□ -0.74
COL6A3-210ENST00000473258 KRI1Q8N9T8 703 aaKnown RBP10.45□□□□□ -0.74
COL6A3-210ENST00000473258 MYBBP1AQ9BQG0 1328 aaKnown RBP10.45□□□□□ -0.74
COL6A3-210ENST00000473258 PPP1R12BO60237 982 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-210ENST00000473258 CCDC174Q6PII3 467 aa10.45□□□□□ -0.74
COL6A3-210ENST00000473258 ARFGAP2Q8N6H7 521 aa10.45□□□□□ -0.74
COL6A3-210ENST00000473258 BCL2L13Q9BXK5 485 aa10.45□□□□□ -0.74
COL6A3-210ENST00000473258 ATP11AP98196 1134 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 NEDD9Q14511 834 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.44□□□□□ -0.74
COL6A3-210ENST00000473258 TBC1D31Q96DN5 1066 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 GBP5Q96PP8 586 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 MXRA7P84157 204 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 HDAC1Q13547 482 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-210ENST00000473258 KLHL40Q2TBA0 621 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 CEP85LQ5SZL2 805 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 NAA15Q9BXJ9 866 aaKnown RBP10.44□□□□□ -0.74
COL6A3-210ENST00000473258 CETN3O15182 167 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 ERCC3P19447 782 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 HDGFP51858 240 aaKnown RBP10.44□□□□□ -0.74
COL6A3-210ENST00000473258 SLC4A10Q6U841 1118 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 LOC102724159A0A0B4J2E5 919 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 TUBB4BP68371 445 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 SATB1Q01826 763 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 PWP2Q15269 919 aaKnown RBP10.44□□□□□ -0.74
COL6A3-210ENST00000473258 CCDC40Q4G0X9 1142 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 WDR78Q5VTH9 848 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 RAB3IL1Q8TBN0 382 aa10.44□□□□□ -0.74
COL6A3-210ENST00000473258 TPX2Q9ULW0 747 aaKnown RBP10.44□□□□□ -0.74
COL6A3-210ENST00000473258 TUBBP07437 444 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 STK38Q15208 465 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 DZIP1LQ8IYY4 767 aaKnown RBP10.43□□□□□ -0.74
COL6A3-210ENST00000473258 FAM76AQ8TAV0 307 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 ROCK2O75116 1388 aaKnown RBP10.43□□□□□ -0.74
COL6A3-210ENST00000473258 PHACTR2O75167 634 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms