RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 DNMT3LQ9UJW3 386 aa8.06□□□□□ -1.12
VPS13A-210ENST00000471439 COG6Q9Y2V7 657 aa8.06□□□□□ -1.12
VPS13A-210ENST00000471439 ADGRL1O94910 1474 aa8.06□□□□□ -1.12
VPS13A-210ENST00000471439 NFX1Q12986 1120 aaKnown RBP8.05□□□□□ -1.12
VPS13A-210ENST00000471439 TSEN34Q9BSV6 310 aaKnown RBP8.04□□□□□ -1.12
VPS13A-210ENST00000471439 ZNF395Q9H8N7 513 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-210ENST00000471439 TIMELESSQ9UNS1 1208 aa8.04□□□□□ -1.12
VPS13A-210ENST00000471439 SOS2Q07890 1332 aaPredicted RBP8.03□□□□□ -1.12
VPS13A-210ENST00000471439 UPP2O95045 317 aa8.03□□□□□ -1.12
VPS13A-210ENST00000471439 CTSOP43234 321 aaPredicted RBP8.03□□□□□ -1.12
VPS13A-210ENST00000471439 CCDC85AQ96PX6 553 aaPredicted RBP8.03□□□□□ -1.12
VPS13A-210ENST00000471439 INSM2Q96T92 566 aaPredicted RBP8.03□□□□□ -1.12
VPS13A-210ENST00000471439 FIGNL2A6NMB9 653 aa8.02□□□□□ -1.13
VPS13A-210ENST00000471439 SPINT1O43278 529 aa8.02□□□□□ -1.13
VPS13A-210ENST00000471439 ADH1AP07327 375 aa8.02□□□□□ -1.13
VPS13A-210ENST00000471439 TSGA10IPQ3SY00 556 aa8.02□□□□□ -1.13
VPS13A-210ENST00000471439 SEPT12Q8IYM1 358 aa8.02□□□□□ -1.13
VPS13A-210ENST00000471439 CDCA7Q9BWT1 371 aaPredicted RBP8.02□□□□□ -1.13
VPS13A-210ENST00000471439 PCDHB11Q9Y5F2 797 aa8.02□□□□□ -1.13
VPS13A-210ENST00000471439 TERTO14746 1132 aaKnown RBP8.01□□□□□ -1.13
VPS13A-210ENST00000471439 MAN1A2O60476 641 aa8.01□□□□□ -1.13
VPS13A-210ENST00000471439 TREML4Q6UXN2 200 aa8.01□□□□□ -1.13
VPS13A-210ENST00000471439 CEP126Q9P2H0 1117 aa8.01□□□□□ -1.13
VPS13A-210ENST00000471439 ZNF608Q9ULD9 1512 aaPredicted RBP8□□□□□ -1.13
VPS13A-210ENST00000471439 TTLL8A6PVC2 850 aa8□□□□□ -1.13
VPS13A-210ENST00000471439 SMARCA4P51532 1647 aa8□□□□□ -1.13
VPS13A-210ENST00000471439 WFS1O76024 890 aa7.99□□□□□ -1.13
VPS13A-210ENST00000471439 ERVK-9P63128 1117 aa7.99□□□□□ -1.13
VPS13A-210ENST00000471439 FOXD4L5Q5VV16 416 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-210ENST00000471439 PRM3Q9NNZ6 103 aa7.99□□□□□ -1.13
VPS13A-210ENST00000471439 POLMQ9NP87 494 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-210ENST00000471439 NXF1Q9UBU9 619 aaKnown RBP7.99□□□□□ -1.13
VPS13A-210ENST00000471439 ZNF330Q9Y3S2 320 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-210ENST00000471439 POM121CA8CG34 1229 aa7.98□□□□□ -1.13
VPS13A-210ENST00000471439 UBTFP17480 764 aaKnown RBP7.98□□□□□ -1.13
VPS13A-210ENST00000471439 CLUAP1Q96AJ1 413 aa7.98□□□□□ -1.13
VPS13A-210ENST00000471439 OSBPL3Q9H4L5 887 aa7.98□□□□□ -1.13
VPS13A-210ENST00000471439 KDM6BO15054 1643 aa7.98□□□□□ -1.13
VPS13A-210ENST00000471439 CEP164Q9UPV0 1460 aa7.98□□□□□ -1.13
VPS13A-210ENST00000471439 ERBB4Q15303 1308 aa7.98□□□□□ -1.13
VPS13A-210ENST00000471439 PIK3CDO00329 1044 aa7.97□□□□□ -1.13
VPS13A-210ENST00000471439 STAU1O95793 577 aaKnown RBP7.97□□□□□ -1.13
VPS13A-210ENST00000471439 PTGIRP43119 386 aa7.97□□□□□ -1.13
VPS13A-210ENST00000471439 EIF4G2P78344 907 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS13A-210ENST00000471439 CC2D2BQ6DHV5 1058 aa7.97□□□□□ -1.13
VPS13A-210ENST00000471439 PHTF2Q8N3S3 785 aa7.97□□□□□ -1.13
VPS13A-210ENST00000471439 RNF217Q8TC41 542 aa7.97□□□□□ -1.13
VPS13A-210ENST00000471439 RAB6BQ9NRW1 208 aa7.97□□□□□ -1.13
VPS13A-210ENST00000471439 CADPSQ9ULU8 1353 aa7.97□□□□□ -1.13
VPS13A-210ENST00000471439 ATP5J2-PTCD1G3V325 749 aa7.96□□□□□ -1.14
VPS13A-210ENST00000471439 H3BM21 787 aa7.96□□□□□ -1.14
VPS13A-210ENST00000471439 RNF20Q5VTR2 975 aa7.96□□□□□ -1.14
VPS13A-210ENST00000471439 MCCD1P59942 119 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-210ENST00000471439 FLIIQ13045 1269 aa7.95□□□□□ -1.14
VPS13A-210ENST00000471439 ADAMTS19Q8TE59 1207 aa7.95□□□□□ -1.14
VPS13A-210ENST00000471439 ARHGEF10LQ9HCE6 1279 aa7.95□□□□□ -1.14
VPS13A-210ENST00000471439 BAZ1BQ9UIG0 1483 aaKnown RBP7.94□□□□□ -1.14
VPS13A-210ENST00000471439 MEN1O00255 615 aa7.94□□□□□ -1.14
VPS13A-210ENST00000471439 TRAK2O60296 914 aa7.94□□□□□ -1.14
VPS13A-210ENST00000471439 PTSQ03393 145 aa7.94□□□□□ -1.14
VPS13A-210ENST00000471439 WASHC4Q2M389 1173 aa7.94□□□□□ -1.14
VPS13A-210ENST00000471439 A0A1W2PRU2 124 aa7.93□□□□□ -1.14
VPS13A-210ENST00000471439 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.93□□□□□ -1.142e-6■■□□□ 13.7
VPS13A-210ENST00000471439 SLFNL1Q499Z3 407 aa7.93□□□□□ -1.14
VPS13A-210ENST00000471439 OXLD1Q5BKU9 147 aa7.93□□□□□ -1.14
VPS13A-210ENST00000471439 RNF135Q8IUD6 432 aa7.93□□□□□ -1.14
VPS13A-210ENST00000471439 DOLKQ9UPQ8 538 aa7.93□□□□□ -1.14
VPS13A-210ENST00000471439 PPFIA3O75145 1194 aa7.92□□□□□ -1.14
VPS13A-210ENST00000471439 ZNF592Q92610 1267 aa7.92□□□□□ -1.14
VPS13A-210ENST00000471439 GAPVD1Q14C86 1478 aa7.92□□□□□ -1.14
VPS13A-210ENST00000471439 DCAF1Q9Y4B6 1507 aa7.92□□□□□ -1.14
VPS13A-210ENST00000471439 SENP3-EIF4A1A0A087X0R7 540 aa7.91□□□□□ -1.14
VPS13A-210ENST00000471439 RAD21O60216 631 aa7.91□□□□□ -1.14
VPS13A-210ENST00000471439 RHOQP17081 205 aa7.91□□□□□ -1.14
VPS13A-210ENST00000471439 GMPRP36959 345 aa7.91□□□□□ -1.14
VPS13A-210ENST00000471439 SEMA3FQ13275 785 aa7.91□□□□□ -1.14
VPS13A-210ENST00000471439 PRICKLE2Q7Z3G6 844 aa7.91□□□□□ -1.14
VPS13A-210ENST00000471439 CYP2U1Q7Z449 544 aa7.91□□□□□ -1.14
VPS13A-210ENST00000471439 URB2Q14146 1524 aaKnown RBP7.91□□□□□ -1.14
VPS13A-210ENST00000471439 CLASP1Q7Z460 1538 aa7.91□□□□□ -1.14
VPS13A-210ENST00000471439 IL2RAP01589 272 aa7.9□□□□□ -1.14
VPS13A-210ENST00000471439 C14orf37Q86TY3 774 aa7.9□□□□□ -1.14
VPS13A-210ENST00000471439 CCDC155Q8N6L0 562 aa7.9□□□□□ -1.14
VPS13A-210ENST00000471439 PLPP7Q8NBV4 271 aa7.9□□□□□ -1.14
VPS13A-210ENST00000471439 ALG2Q9H553 416 aa7.9□□□□□ -1.14
VPS13A-210ENST00000471439 CHIC2Q9UKJ5 165 aa7.9□□□□□ -1.14
VPS13A-210ENST00000471439 WIPF1O43516 503 aa7.89□□□□□ -1.15
VPS13A-210ENST00000471439 UCN2Q96RP3 112 aa7.89□□□□□ -1.15
VPS13A-210ENST00000471439 EIF4G3O43432 1585 aaKnown RBP7.88□□□□□ -1.15
VPS13A-210ENST00000471439 FANCD2Q9BXW9 1451 aa7.88□□□□□ -1.15
VPS13A-210ENST00000471439 SLC35F4A4IF30 521 aa7.88□□□□□ -1.15
VPS13A-210ENST00000471439 MYCP01106 439 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-210ENST00000471439 FNBP4Q8N3X1 1017 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-210ENST00000471439 RNF144AP50876 292 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-210ENST00000471439 CLN3Q13286 438 aa7.87□□□□□ -1.15
VPS13A-210ENST00000471439 LYSMD3Q7Z3D4 306 aa7.87□□□□□ -1.15
VPS13A-210ENST00000471439 PROSER2Q86WR7 435 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-210ENST00000471439 CCDC125Q86Z20 511 aa7.87□□□□□ -1.15
VPS13A-210ENST00000471439 NPAS3Q8IXF0 933 aa7.87□□□□□ -1.15
VPS13A-210ENST00000471439 SLC16A10Q8TF71 515 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms