RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 CARD14Q9BXL6 1004 aa9.77□□□□□ -0.85
CKS1B-204ENST00000471245 GZF1Q9H116 711 aaPredicted RBP9.77□□□□□ -0.85
CKS1B-204ENST00000471245 PDZRN3Q9UPQ7 1066 aa9.77□□□□□ -0.85
CKS1B-204ENST00000471245 PTK7Q13308 1070 aa9.76□□□□□ -0.85
CKS1B-204ENST00000471245 CRTC2Q53ET0 693 aaPredicted RBP9.76□□□□□ -0.85
CKS1B-204ENST00000471245 LARP1Q6PKG0 1096 aaKnown RBP9.76□□□□□ -0.85
CKS1B-204ENST00000471245 STK32AQ8WU08 396 aa9.76□□□□□ -0.85
CKS1B-204ENST00000471245 RNF20Q5VTR2 975 aa9.75□□□□□ -0.85
CKS1B-204ENST00000471245 TRIM50Q86XT4 487 aa9.75□□□□□ -0.85
CKS1B-204ENST00000471245 SLC10A4Q96EP9 437 aa9.75□□□□□ -0.85
CKS1B-204ENST00000471245 NRG2O14511 850 aaPredicted RBP9.74□□□□□ -0.85
CKS1B-204ENST00000471245 RASA1P20936 1047 aa9.74□□□□□ -0.85
CKS1B-204ENST00000471245 NR5A1Q13285 461 aa9.74□□□□□ -0.85
CKS1B-204ENST00000471245 NBPF20Q3BBV1 942 aa9.74□□□□□ -0.85
CKS1B-204ENST00000471245 DOLKQ9UPQ8 538 aa9.74□□□□□ -0.85
CKS1B-204ENST00000471245 TTC24A2A3L6 582 aaPredicted RBP9.73□□□□□ -0.85
CKS1B-204ENST00000471245 TNFRSF10AO00220 468 aa9.73□□□□□ -0.85
CKS1B-204ENST00000471245 LCE2BO14633 110 aa9.73□□□□□ -0.85
CKS1B-204ENST00000471245 GFRA3O60609 400 aa9.73□□□□□ -0.85
CKS1B-204ENST00000471245 GRM5P41594 1212 aa9.73□□□□□ -0.85
CKS1B-204ENST00000471245 ATP1A2P50993 1020 aa9.73□□□□□ -0.85
CKS1B-204ENST00000471245 NOD1Q9Y239 953 aa9.73□□□□□ -0.85
CKS1B-204ENST00000471245 ADH1CP00326 375 aa9.72□□□□□ -0.85
CKS1B-204ENST00000471245 SEPT12Q8IYM1 358 aa9.72□□□□□ -0.85
CKS1B-204ENST00000471245 CCDC85AQ96PX6 553 aaPredicted RBP9.72□□□□□ -0.85
CKS1B-204ENST00000471245 GNEQ9Y223 722 aaKnown RBP9.72□□□□□ -0.85
CKS1B-204ENST00000471245 ERCC6Q03468 1493 aa9.72□□□□□ -0.85
CKS1B-204ENST00000471245 ESPNB1AK53 854 aa9.71□□□□□ -0.86
CKS1B-204ENST00000471245 ANKMY2Q8IV38 441 aa9.71□□□□□ -0.86
CKS1B-204ENST00000471245 OGFOD1Q8N543 542 aa9.71□□□□□ -0.86
CKS1B-204ENST00000471245 FAM200AQ8TCP9 573 aa9.71□□□□□ -0.86
CKS1B-204ENST00000471245 CDCA7Q9BWT1 371 aaPredicted RBP9.71□□□□□ -0.86
CKS1B-204ENST00000471245 IVNS1ABPQ9Y6Y0 642 aa9.71□□□□□ -0.86
CKS1B-204ENST00000471245 GIGYF1O75420 1035 aaPredicted RBP9.7□□□□□ -0.86
CKS1B-204ENST00000471245 DGAT1O75907 488 aa9.7□□□□□ -0.86
CKS1B-204ENST00000471245 ALDH1A1P00352 501 aa9.7□□□□□ -0.86
CKS1B-204ENST00000471245 SMPD1P17405 629 aa9.7□□□□□ -0.86
CKS1B-204ENST00000471245 CLDN10P78369 228 aa9.7□□□□□ -0.86
CKS1B-204ENST00000471245 VASH1Q7L8A9 365 aaPredicted RBP9.7□□□□□ -0.86
CKS1B-204ENST00000471245 LARGE2Q8N3Y3 721 aa9.7□□□□□ -0.86
CKS1B-204ENST00000471245 CLP1Q92989 425 aaKnown RBP9.7□□□□□ -0.86
CKS1B-204ENST00000471245 TRIM52Q96A61 297 aa9.7□□□□□ -0.86
CKS1B-204ENST00000471245 KCTD15Q96SI1 283 aaPredicted RBP9.7□□□□□ -0.86
CKS1B-204ENST00000471245 DNAAF2Q9NVR5 837 aaKnown RBP9.7□□□□□ -0.86
CKS1B-204ENST00000471245 FAM69CQ0P6D2 419 aa9.69□□□□□ -0.86
CKS1B-204ENST00000471245 SWI5Q1ZZU3 235 aa9.69□□□□□ -0.86
CKS1B-204ENST00000471245 TSGA10IPQ3SY00 556 aa9.69□□□□□ -0.86
CKS1B-204ENST00000471245 SIX5Q8N196 739 aa9.69□□□□□ -0.86
CKS1B-204ENST00000471245 WASF2Q9Y6W5 498 aa9.69□□□□□ -0.86
CKS1B-204ENST00000471245 AVPP01185 164 aa9.68□□□□□ -0.86
CKS1B-204ENST00000471245 MFAP1P55081 439 aaKnown RBP9.68□□□□□ -0.86
CKS1B-204ENST00000471245 ARID5BQ14865 1188 aa9.68□□□□□ -0.86
CKS1B-204ENST00000471245 NPM2Q86SE8 214 aaKnown RBP9.68□□□□□ -0.86
CKS1B-204ENST00000471245 SIRT1Q96EB6 747 aa9.68□□□□□ -0.86
CKS1B-204ENST00000471245 TLL2Q9Y6L7 1015 aa9.68□□□□□ -0.86
CKS1B-204ENST00000471245 J3QL48 77 aa9.67□□□□□ -0.86
CKS1B-204ENST00000471245 DPYDQ12882 1025 aa9.67□□□□□ -0.86
CKS1B-204ENST00000471245 OXLD1Q5BKU9 147 aa9.67□□□□□ -0.86
CKS1B-204ENST00000471245 DKK1O94907 266 aa9.66□□□□□ -0.86
CKS1B-204ENST00000471245 SSFA2P28290 1259 aa9.66□□□□□ -0.86
CKS1B-204ENST00000471245 RANGAP1P46060 587 aaPredicted RBP9.66□□□□□ -0.86
CKS1B-204ENST00000471245 GTF2IP78347 998 aa9.66□□□□□ -0.86
CKS1B-204ENST00000471245 DHX9Q08211 1270 aaKnown RBP9.66□□□□□ -0.86
CKS1B-204ENST00000471245 SND1Q7KZF4 910 aaKnown RBP eCLIP9.66□□□□□ -0.86
CKS1B-204ENST00000471245 ZNF594Q96JF6 807 aaPredicted RBP9.66□□□□□ -0.86
CKS1B-204ENST00000471245 USP4Q13107 963 aa9.65□□□□□ -0.86
CKS1B-204ENST00000471245 PHLDB3Q6NSJ2 640 aa9.65□□□□□ -0.86
CKS1B-204ENST00000471245 TXNDC2Q86VQ3 553 aa9.65□□□□□ -0.86
CKS1B-204ENST00000471245 RGS22Q8NE09 1264 aa9.65□□□□□ -0.86
CKS1B-204ENST00000471245 CCER1Q8TC90 406 aaPredicted RBP9.65□□□□□ -0.86
CKS1B-204ENST00000471245 NNTQ13423 1086 aa9.64□□□□□ -0.87
CKS1B-204ENST00000471245 KLF16Q9BXK1 252 aaPredicted RBP9.64□□□□□ -0.87
CKS1B-204ENST00000471245 SLAIN2Q9P270 581 aa9.64□□□□□ -0.87
CKS1B-204ENST00000471245 KIAA1024Q9UPX6 916 aa9.64□□□□□ -0.87
CKS1B-204ENST00000471245 PCDHB11Q9Y5F2 797 aa9.64□□□□□ -0.87
CKS1B-204ENST00000471245 ZBTB7BO15156 539 aaPredicted RBP9.63□□□□□ -0.87
CKS1B-204ENST00000471245 SMCPP49901 116 aaPredicted RBP9.63□□□□□ -0.87
CKS1B-204ENST00000471245 SEC13P55735 322 aa9.63□□□□□ -0.87
CKS1B-204ENST00000471245 CTC1Q2NKJ3 1217 aa9.63□□□□□ -0.87
CKS1B-204ENST00000471245 INTS6LQ5JSJ4 861 aaKnown RBP9.63□□□□□ -0.87
CKS1B-204ENST00000471245 CCDC116Q8IYX3 515 aa9.63□□□□□ -0.87
CKS1B-204ENST00000471245 EMILIN1Q9Y6C2 1016 aa9.63□□□□□ -0.87
CKS1B-204ENST00000471245 FSHRP23945 695 aa9.62□□□□□ -0.87
CKS1B-204ENST00000471245 PKDCCQ504Y2 493 aa9.62□□□□□ -0.87
CKS1B-204ENST00000471245 CRIPAKQ8N1N5 446 aa9.62□□□□□ -0.87
CKS1B-204ENST00000471245 C1orf216Q8TAB5 229 aa9.62□□□□□ -0.87
CKS1B-204ENST00000471245 RBM19Q9Y4C8 960 aaKnown RBP9.62□□□□□ -0.87
CKS1B-204ENST00000471245 PCDHGA11Q9Y5H2 935 aa9.62□□□□□ -0.87
CKS1B-204ENST00000471245 NCAPD3P42695 1498 aa9.61□□□□□ -0.87
CKS1B-204ENST00000471245 FAM187AA6NFU0 413 aa9.61□□□□□ -0.87
CKS1B-204ENST00000471245 NR3C2P08235 984 aa9.61□□□□□ -0.87
CKS1B-204ENST00000471245 ATP2B4P23634 1241 aa9.61□□□□□ -0.87
CKS1B-204ENST00000471245 ARID4AP29374 1257 aaPredicted RBP9.61□□□□□ -0.87
CKS1B-204ENST00000471245 CCDC102BQ68D86 513 aa9.61□□□□□ -0.87
CKS1B-204ENST00000471245 HPS1Q92902 700 aa9.61□□□□□ -0.87
CKS1B-204ENST00000471245 THOC2Q8NI27 1593 aaKnown RBP9.6□□□□□ -0.87
CKS1B-204ENST00000471245 CCDC27Q2M243 656 aa9.6□□□□□ -0.87
CKS1B-204ENST00000471245 TPCN2Q8NHX9 752 aa9.6□□□□□ -0.87
CKS1B-204ENST00000471245 PGPEP1Q9NXJ5 209 aa9.6□□□□□ -0.87
CKS1B-204ENST00000471245 NESP48681 1621 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms