RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 AEBP2Q6ZN18 517 aaPredicted RBP25.35■■□□□ 1.65
CKS1B-204ENST00000471245 CHIC1Q5VXU3 224 aa24.92■■□□□ 1.58
CKS1B-204ENST00000471245 PHF23Q9BUL5 403 aaPredicted RBP21.88■■□□□ 1.09
CKS1B-204ENST00000471245 SENP3Q9H4L4 574 aaPredicted RBP21.6■■□□□ 1.05
CKS1B-204ENST00000471245 PLPPR3Q6T4P5 718 aa20.29■□□□□ 0.84
CKS1B-204ENST00000471245 FOXD1Q16676 465 aa20.1■□□□□ 0.81
CKS1B-204ENST00000471245 POTEDQ86YR6 584 aa19.89■□□□□ 0.77
CKS1B-204ENST00000471245 PPP6R1Q9UPN7 881 aa19.25■□□□□ 0.67
CKS1B-204ENST00000471245 ADRA2BP18089 450 aa19.21■□□□□ 0.67
CKS1B-204ENST00000471245 MSH5O43196 834 aa19.11■□□□□ 0.65
CKS1B-204ENST00000471245 PIAS4Q8N2W9 510 aaPredicted RBP18.82■□□□□ 0.6
CKS1B-204ENST00000471245 PPP4R3CPQ6ZMV5 832 aa17.84■□□□□ 0.45
CKS1B-204ENST00000471245 SCAF1Q9H7N4 1312 aaKnown RBP17.73■□□□□ 0.43
CKS1B-204ENST00000471245 KCNA4P22459 653 aa17.47■□□□□ 0.39
CKS1B-204ENST00000471245 NCBP3Q53F19 620 aaKnown RBP17.47■□□□□ 0.39
CKS1B-204ENST00000471245 MAPK8IP2Q13387 824 aaPredicted RBP17.39■□□□□ 0.37
CKS1B-204ENST00000471245 CNKSR2Q8WXI2 1034 aa17.38■□□□□ 0.37
CKS1B-204ENST00000471245 DMRT2Q9Y5R5 561 aa17.25■□□□□ 0.35
CKS1B-204ENST00000471245 NPM3O75607 178 aaKnown RBP17.13■□□□□ 0.33
CKS1B-204ENST00000471245 RNF216Q9NWF9 866 aaPredicted RBP17.03■□□□□ 0.32
CKS1B-204ENST00000471245 HOXD11P31277 338 aaPredicted RBP16.96■□□□□ 0.31
CKS1B-204ENST00000471245 DNAJC5BQ9UF47 199 aa16.85■□□□□ 0.29
CKS1B-204ENST00000471245 CACNB1Q02641 598 aaPredicted RBP16.83■□□□□ 0.28
CKS1B-204ENST00000471245 SLC4A1APQ9BWU0 796 aaKnown RBP16.68■□□□□ 0.26
CKS1B-204ENST00000471245 EHMT2Q96KQ7 1210 aa16.67■□□□□ 0.26
CKS1B-204ENST00000471245 DCAF8L1A6NGE4 600 aa16.34■□□□□ 0.21
CKS1B-204ENST00000471245 CSRNP3Q8WYN3 585 aa16.24■□□□□ 0.19
CKS1B-204ENST00000471245 SLC4A2P04920 1241 aa16.17■□□□□ 0.18
CKS1B-204ENST00000471245 RNF39Q9H2S5 420 aa16.17■□□□□ 0.18
CKS1B-204ENST00000471245 FOXD4L1Q9NU39 408 aa16.12■□□□□ 0.17
CKS1B-204ENST00000471245 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.07■□□□□ 0.16
CKS1B-204ENST00000471245 ZBTB22O15209 634 aa16.05■□□□□ 0.16
CKS1B-204ENST00000471245 C1QBPQ07021 282 aaKnown RBP15.95■□□□□ 0.14
CKS1B-204ENST00000471245 MYCNP04198 464 aaPredicted RBP15.87■□□□□ 0.13
CKS1B-204ENST00000471245 U3KPZ7 1027 aaPredicted RBP15.82■□□□□ 0.12
CKS1B-204ENST00000471245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.77■□□□□ 0.12
CKS1B-204ENST00000471245 HNRNPUL2Q1KMD3 747 aaKnown RBP15.77■□□□□ 0.12
CKS1B-204ENST00000471245 SAMD1Q6SPF0 538 aaPredicted RBP15.68■□□□□ 0.1
CKS1B-204ENST00000471245 ATXN8OSP0DMR3 200 aa15.66■□□□□ 0.1
CKS1B-204ENST00000471245 APLP2Q06481 763 aa15.59■□□□□ 0.09
CKS1B-204ENST00000471245 POTEHQ6S545 545 aa15.46■□□□□ 0.07
CKS1B-204ENST00000471245 ATF5Q9Y2D1 282 aaPredicted RBP15.34■□□□□ 0.05
CKS1B-204ENST00000471245 SPINK5Q9NQ38 1064 aaPredicted RBP15.3■□□□□ 0.04
CKS1B-204ENST00000471245 ZNF219Q9P2Y4 722 aaPredicted RBP15.29■□□□□ 0.04
CKS1B-204ENST00000471245 CAPN15O75808 1086 aa15.25■□□□□ 0.03
CKS1B-204ENST00000471245 TRHP20396 242 aaPredicted RBP15.18■□□□□ 0.02
CKS1B-204ENST00000471245 DSG3P32926 999 aa15.04■□□□□ -0
CKS1B-204ENST00000471245 POLA2Q14181 598 aa15.01□□□□□ -0.01
CKS1B-204ENST00000471245 ABCB7O75027 752 aa14.9□□□□□ -0.02
CKS1B-204ENST00000471245 ZBTB12Q9Y330 459 aaPredicted RBP14.87□□□□□ -0.03
CKS1B-204ENST00000471245 FBLN2P98095 1184 aa14.78□□□□□ -0.04
CKS1B-204ENST00000471245 MKRN4PQ13434 485 aaPredicted RBP14.72□□□□□ -0.05
CKS1B-204ENST00000471245 FKBP8Q14318 412 aa14.63□□□□□ -0.07
CKS1B-204ENST00000471245 SPDYE2BA6NHP3 402 aa14.45□□□□□ -0.1
CKS1B-204ENST00000471245 SPDYE6P0CI01 402 aa14.45□□□□□ -0.1
CKS1B-204ENST00000471245 SPDYE2Q495Y8 402 aa14.45□□□□□ -0.1
CKS1B-204ENST00000471245 AMER1Q5JTC6 1135 aaPredicted RBP14.45□□□□□ -0.1
CKS1B-204ENST00000471245 SPDYE4A6NLX3 237 aa14.44□□□□□ -0.1
CKS1B-204ENST00000471245 OSCARQ8IYS5 282 aa14.43□□□□□ -0.1
CKS1B-204ENST00000471245 RBM42Q9BTD8 480 aaKnown RBP14.39□□□□□ -0.11
CKS1B-204ENST00000471245 RTN4Q9NQC3 1192 aaKnown RBP14.36□□□□□ -0.11
CKS1B-204ENST00000471245 ZNF692Q9BU19 519 aaPredicted RBP14.35□□□□□ -0.11
CKS1B-204ENST00000471245 SSUH2Q9Y2M2 353 aa14.33□□□□□ -0.12
CKS1B-204ENST00000471245 PROM2Q8N271 834 aa14.31□□□□□ -0.12
CKS1B-204ENST00000471245 AKT1S1Q96B36 256 aa14.23□□□□□ -0.13
CKS1B-204ENST00000471245 CHRDL2Q6WN34 429 aa14.22□□□□□ -0.13
CKS1B-204ENST00000471245 SP7Q8TDD2 431 aaPredicted RBP14.14□□□□□ -0.15
CKS1B-204ENST00000471245 PABPN1Q86U42 306 aaKnown RBP eCLIP14.13□□□□□ -0.15
CKS1B-204ENST00000471245 FBXO3Q9UK99 471 aa14.08□□□□□ -0.16
CKS1B-204ENST00000471245 REM2Q8IYK8 340 aaPredicted RBP14.03□□□□□ -0.16
CKS1B-204ENST00000471245 STAG3Q9UJ98 1225 aa14.03□□□□□ -0.16
CKS1B-204ENST00000471245 SPDYE1Q8NFV5 336 aaPredicted RBP13.99□□□□□ -0.17
CKS1B-204ENST00000471245 SLC24A1O60721 1099 aa13.98□□□□□ -0.17
CKS1B-204ENST00000471245 PITPNM1O00562 1244 aa13.83□□□□□ -0.2
CKS1B-204ENST00000471245 VASPP50552 380 aaPredicted RBP13.8□□□□□ -0.2
CKS1B-204ENST00000471245 CLEC11AQ9Y240 323 aa13.8□□□□□ -0.2
CKS1B-204ENST00000471245 PRR29P0C7W0 189 aa13.77□□□□□ -0.21
CKS1B-204ENST00000471245 PIP4P2Q8N4L2 257 aa13.73□□□□□ -0.21
CKS1B-204ENST00000471245 MIER1Q8N108 512 aa13.69□□□□□ -0.22
CKS1B-204ENST00000471245 HAX1O00165 279 aa13.68□□□□□ -0.22
CKS1B-204ENST00000471245 PLEKHG5O94827 1062 aa13.66□□□□□ -0.22
CKS1B-204ENST00000471245 PLCD3Q8N3E9 789 aa13.65□□□□□ -0.22
CKS1B-204ENST00000471245 FXR2P51116 673 aaKnown RBP eCLIP13.63□□□□□ -0.23
CKS1B-204ENST00000471245 IFNLR1Q8IU57 520 aaPredicted RBP13.62□□□□□ -0.23
CKS1B-204ENST00000471245 ZBTB47Q9UFB7 747 aaPredicted RBP13.61□□□□□ -0.23
CKS1B-204ENST00000471245 CREBZFQ9NS37 354 aa13.6□□□□□ -0.23
CKS1B-204ENST00000471245 KLHL34Q8N239 644 aa13.52□□□□□ -0.25
CKS1B-204ENST00000471245 MNX1P50219 401 aaPredicted RBP13.51□□□□□ -0.25
CKS1B-204ENST00000471245 PRKAR2AP13861 404 aaKnown RBP13.49□□□□□ -0.25
CKS1B-204ENST00000471245 SPOCK2Q92563 424 aa13.48□□□□□ -0.25
CKS1B-204ENST00000471245 NPM1P06748 294 aaKnown RBP eCLIP13.44□□□□□ -0.26
CKS1B-204ENST00000471245 CHADLQ6NUI6 762 aa13.43□□□□□ -0.26
CKS1B-204ENST00000471245 FARP1Q9Y4F1 1045 aaPredicted RBP13.43□□□□□ -0.26
CKS1B-204ENST00000471245 EVX2Q03828 476 aa13.42□□□□□ -0.26
CKS1B-204ENST00000471245 PKD2Q13563 968 aa13.4□□□□□ -0.26
CKS1B-204ENST00000471245 NUBP1P53384 320 aa13.36□□□□□ -0.27
CKS1B-204ENST00000471245 PLCB2Q00722 1185 aa13.32□□□□□ -0.28
CKS1B-204ENST00000471245 DCAF8L2P0C7V8 631 aa13.27□□□□□ -0.29
CKS1B-204ENST00000471245 GSE1Q14687 1217 aa13.27□□□□□ -0.29
CKS1B-204ENST00000471245 LHX8Q68G74 356 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 222.9 ms