RNA–Protein interactions for RNA: ENST00000470537.1

XRN1-208, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-208ENST00000470537 SSH2Q76I76 1423 aa12.86□□□□□ -0.35
XRN1-208ENST00000470537 ACEP12821 1306 aa12.86□□□□□ -0.35
XRN1-208ENST00000470537 POLR3AO14802 1390 aaPredicted RBP12.85□□□□□ -0.35
XRN1-208ENST00000470537 SPNS2Q8IVW8 549 aa12.85□□□□□ -0.35
XRN1-208ENST00000470537 BRD4O60885 1362 aaPredicted RBP12.84□□□□□ -0.35
XRN1-208ENST00000470537 GCP02774 474 aa12.84□□□□□ -0.35
XRN1-208ENST00000470537 MMRN1Q13201 1228 aa12.83□□□□□ -0.36
XRN1-208ENST00000470537 CDCA7Q9BWT1 371 aaPredicted RBP12.83□□□□□ -0.36
XRN1-208ENST00000470537 CRYBG1Q9Y4K1 1723 aa12.82□□□□□ -0.36
XRN1-208ENST00000470537 DDB1Q16531 1140 aa12.82□□□□□ -0.36
XRN1-208ENST00000470537 EFCAB3Q8N7B9 438 aa12.82□□□□□ -0.36
XRN1-208ENST00000470537 OVOS2A0A0G2JMS6 1433 aa12.81□□□□□ -0.36
XRN1-208ENST00000470537 OVOS2A0A0J9YW53 1432 aa12.81□□□□□ -0.36
XRN1-208ENST00000470537 OVOS2Q6IE36 1432 aa12.81□□□□□ -0.36
XRN1-208ENST00000470537 FAM205CA6NFA0 338 aa12.81□□□□□ -0.36
XRN1-208ENST00000470537 SRPK2P78362 688 aaKnown RBP12.81□□□□□ -0.36
XRN1-208ENST00000470537 BCL11BQ9C0K0 894 aaPredicted RBP12.81□□□□□ -0.36
XRN1-208ENST00000470537 CRB1P82279 1406 aa12.8□□□□□ -0.36
XRN1-208ENST00000470537 CAMTA1Q9Y6Y1 1673 aa12.8□□□□□ -0.36
XRN1-208ENST00000470537 HS3ST6Q96QI5 342 aa12.8□□□□□ -0.36
XRN1-208ENST00000470537 USP19O94966 1318 aa12.8□□□□□ -0.36
XRN1-208ENST00000470537 PHRF1Q9P1Y6 1649 aaKnown RBP12.8□□□□□ -0.36
XRN1-208ENST00000470537 RAB3GAP2Q9H2M9 1393 aa12.8□□□□□ -0.36
XRN1-208ENST00000470537 NLRP6P59044 892 aa12.79□□□□□ -0.36
XRN1-208ENST00000470537 TOM1L2Q6ZVM7 507 aa12.79□□□□□ -0.36
XRN1-208ENST00000470537 RREB1Q92766 1687 aa12.79□□□□□ -0.36
XRN1-208ENST00000470537 AATKQ6ZMQ8 1374 aa12.78□□□□□ -0.36
XRN1-208ENST00000470537 NUP188Q5SRE5 1749 aa12.77□□□□□ -0.36
XRN1-208ENST00000470537 COL5A2P05997 1499 aaPredicted RBP12.77□□□□□ -0.37
XRN1-208ENST00000470537 ZBTB7CA1YPR0 619 aa12.76□□□□□ -0.37
XRN1-208ENST00000470537 HOXB3P14651 431 aaPredicted RBP12.76□□□□□ -0.37
XRN1-208ENST00000470537 ZNF710Q8N1W2 664 aa12.76□□□□□ -0.37
XRN1-208ENST00000470537 KCNH5Q8NCM2 988 aa12.76□□□□□ -0.37
XRN1-208ENST00000470537 STK32BQ9NY57 414 aa12.76□□□□□ -0.37
XRN1-208ENST00000470537 ARHGEF28Q8N1W1 1705 aaKnown RBP12.76□□□□□ -0.37
XRN1-208ENST00000470537 PARP4Q9UKK3 1724 aaKnown RBP12.76□□□□□ -0.37
XRN1-208ENST00000470537 POTEB3A0JP26 581 aa12.75□□□□□ -0.37
XRN1-208ENST00000470537 EXOC5O00471 708 aa12.75□□□□□ -0.37
XRN1-208ENST00000470537 RIOK3O14730 519 aaKnown RBP12.75□□□□□ -0.37
XRN1-208ENST00000470537 PPIP5K1Q6PFW1 1433 aa12.75□□□□□ -0.37
XRN1-208ENST00000470537 POTEBQ6S5H4 581 aa12.75□□□□□ -0.37
XRN1-208ENST00000470537 LMO7Q8WWI1 1683 aa12.74□□□□□ -0.37
XRN1-208ENST00000470537 NRKQ7Z2Y5 1582 aa12.74□□□□□ -0.37
XRN1-208ENST00000470537 CENPJQ9HC77 1338 aaPredicted RBP12.74□□□□□ -0.37
XRN1-208ENST00000470537 RGPD3A6NKT7 1758 aaPredicted RBP12.74□□□□□ -0.37
XRN1-208ENST00000470537 RGPD4Q7Z3J3 1758 aa12.74□□□□□ -0.37
XRN1-208ENST00000470537 BCL9O00512 1426 aa12.73□□□□□ -0.37
XRN1-208ENST00000470537 WDR17Q8IZU2 1322 aa12.73□□□□□ -0.37
XRN1-208ENST00000470537 CSB-PGBD3P0DP91 1061 aa12.73□□□□□ -0.37
XRN1-208ENST00000470537 CABP1Q9NZU7 370 aa12.73□□□□□ -0.37
XRN1-208ENST00000470537 ZBTB7AO95365 584 aa12.72□□□□□ -0.37
XRN1-208ENST00000470537 TXNRD1Q16881 649 aa12.72□□□□□ -0.37
XRN1-208ENST00000470537 DOK7Q18PE1 504 aa12.72□□□□□ -0.37
XRN1-208ENST00000470537 CARD10Q9BWT7 1032 aa12.72□□□□□ -0.37
XRN1-208ENST00000470537 MTFR1LQ9H019 292 aa12.72□□□□□ -0.37
XRN1-208ENST00000470537 TOPAZ1Q8N9V7 1692 aa12.71□□□□□ -0.37
XRN1-208ENST00000470537 SLC15A2Q16348 729 aa12.71□□□□□ -0.37
XRN1-208ENST00000470537 RNF25Q96BH1 459 aaPredicted RBP12.71□□□□□ -0.37
XRN1-208ENST00000470537 KRTAP3-3Q9BYR6 98 aa12.71□□□□□ -0.37
XRN1-208ENST00000470537 KRTAP3-2Q9BYR7 98 aa12.71□□□□□ -0.37
XRN1-208ENST00000470537 KIAA1210Q9ULL0 1709 aa12.71□□□□□ -0.38
XRN1-208ENST00000470537 EVC2Q86UK5 1308 aa12.7□□□□□ -0.38
XRN1-208ENST00000470537 MARCH10Q8NA82 808 aaPredicted RBP12.7□□□□□ -0.38
XRN1-208ENST00000470537 ZNF784Q8NCA9 323 aaPredicted RBP12.7□□□□□ -0.38
XRN1-208ENST00000470537 SYT17Q9BSW7 474 aa12.7□□□□□ -0.38
XRN1-208ENST00000470537 ANO8Q9HCE9 1232 aaPredicted RBP12.7□□□□□ -0.38
XRN1-208ENST00000470537 USP6P35125 1406 aa12.7□□□□□ -0.38
XRN1-208ENST00000470537 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.69□□□□□ -0.38
XRN1-208ENST00000470537 PTGER2P43116 358 aa12.69□□□□□ -0.38
XRN1-208ENST00000470537 ARHGEF25Q86VW2 580 aa12.69□□□□□ -0.38
XRN1-208ENST00000470537 MICALL2Q8IY33 904 aa12.69□□□□□ -0.38
XRN1-208ENST00000470537 ZFP91Q96JP5 570 aaPredicted RBP12.69□□□□□ -0.38
XRN1-208ENST00000470537 FHDC1Q9C0D6 1143 aaPredicted RBP12.69□□□□□ -0.38
XRN1-208ENST00000470537 CCDC7Q96M83 1385 aa12.69□□□□□ -0.38
XRN1-208ENST00000470537 TTC21AQ8NDW8 1320 aa12.68□□□□□ -0.38
XRN1-208ENST00000470537 SBF2Q86WG5 1849 aa12.68□□□□□ -0.38
XRN1-208ENST00000470537 SOX12O15370 315 aa12.68□□□□□ -0.38
XRN1-208ENST00000470537 HOXB1P14653 301 aaPredicted RBP12.68□□□□□ -0.38
XRN1-208ENST00000470537 NBPF1Q3BBV0 1214 aa12.68□□□□□ -0.38
XRN1-208ENST00000470537 AXIN2Q9Y2T1 843 aa12.68□□□□□ -0.38
XRN1-208ENST00000470537 PEAK1Q9H792 1746 aa12.68□□□□□ -0.38
XRN1-208ENST00000470537 RIMBP2O15034 1052 aa12.67□□□□□ -0.38
XRN1-208ENST00000470537 ARXQ96QS3 562 aa12.67□□□□□ -0.38
XRN1-208ENST00000470537 SLIT3O75094 1523 aa12.66□□□□□ -0.38
XRN1-208ENST00000470537 LRRC37A3O60309 1634 aa12.66□□□□□ -0.38
XRN1-208ENST00000470537 CPSF1Q10570 1443 aaKnown RBP12.65□□□□□ -0.38
XRN1-208ENST00000470537 SENP3-EIF4A1A0A087X0R7 540 aa12.65□□□□□ -0.38
XRN1-208ENST00000470537 C1QTNF8P60827 252 aa12.65□□□□□ -0.38
XRN1-208ENST00000470537 PTF1AQ7RTS3 328 aa12.65□□□□□ -0.38
XRN1-208ENST00000470537 SLC16A10Q8TF71 515 aa12.65□□□□□ -0.38
XRN1-208ENST00000470537 PDGFDQ9GZP0 370 aaPredicted RBP12.65□□□□□ -0.38
XRN1-208ENST00000470537 CASZ1Q86V15 1759 aa12.65□□□□□ -0.38
XRN1-208ENST00000470537 ERBB3P21860 1342 aa12.64□□□□□ -0.39
XRN1-208ENST00000470537 TTC21BQ7Z4L5 1316 aa12.64□□□□□ -0.39
XRN1-208ENST00000470537 AKAP12Q02952 1782 aa12.64□□□□□ -0.39
XRN1-208ENST00000470537 UTRNP46939 3433 aa12.64□□□□□ -0.39
XRN1-208ENST00000470537 HMGB2P26583 209 aaKnown RBP12.64□□□□□ -0.39
XRN1-208ENST00000470537 GPR162Q16538 588 aa12.64□□□□□ -0.39
XRN1-208ENST00000470537 CHD4Q14839 1912 aa12.63□□□□□ -0.39
XRN1-208ENST00000470537 POLD1P28340 1107 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms