RNA–Protein interactions for RNA: ENST00000456957.2

PKNOX1-204, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 3

Gene PKNOX1, Length 569 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-204ENST00000456957 RXRBP28702 533 aa21.52■■□□□ 1.04
PKNOX1-204ENST00000456957 IL2RBP14784 551 aa21.51■■□□□ 1.03
PKNOX1-204ENST00000456957 BARGINQ6ZT62 677 aa21.51■■□□□ 1.03
PKNOX1-204ENST00000456957 CCDC146Q8IYE0 955 aa21.51■■□□□ 1.03
PKNOX1-204ENST00000456957 RAPGEF4Q8WZA2 1011 aa21.51■■□□□ 1.03
PKNOX1-204ENST00000456957 PLEKHF1Q96S99 279 aa21.51■■□□□ 1.03
PKNOX1-204ENST00000456957 VIRMAQ69YN4 1812 aaKnown RBP21.5■■□□□ 1.03
PKNOX1-204ENST00000456957 PLEKHG2Q9H7P9 1386 aa21.49■■□□□ 1.03
PKNOX1-204ENST00000456957 TATP17735 454 aaPredicted RBP21.49■■□□□ 1.03
PKNOX1-204ENST00000456957 FAM98CQ17RN3 349 aaKnown RBP21.49■■□□□ 1.03
PKNOX1-204ENST00000456957 BRWD3Q6RI45 1802 aa21.49■■□□□ 1.03
PKNOX1-204ENST00000456957 PHACTR3Q96KR7 559 aa21.48■■□□□ 1.03
PKNOX1-204ENST00000456957 PNNQ9H307 717 aaKnown RBP21.48■■□□□ 1.03
PKNOX1-204ENST00000456957 RUNDC1Q96C34 613 aa21.47■■□□□ 1.03
PKNOX1-204ENST00000456957 CDCA7Q9BWT1 371 aaPredicted RBP21.47■■□□□ 1.03
PKNOX1-204ENST00000456957 TNS2Q63HR2 1409 aa21.46■■□□□ 1.03
PKNOX1-204ENST00000456957 RBM6P78332 1123 aaKnown RBP21.46■■□□□ 1.03
PKNOX1-204ENST00000456957 MAPK8IP3Q9UPT6 1336 aa21.46■■□□□ 1.03
PKNOX1-204ENST00000456957 UPF1Q92900 1129 aaKnown RBP eCLIP21.45■■□□□ 1.02
PKNOX1-204ENST00000456957 ONECUT3O60422 494 aaPredicted RBP21.43■■□□□ 1.02
PKNOX1-204ENST00000456957 PLEKHO1Q53GL0 409 aaPredicted RBP21.43■■□□□ 1.02
PKNOX1-204ENST00000456957 NEFMP07197 916 aa21.42■■□□□ 1.02
PKNOX1-204ENST00000456957 MTHFSDQ2M296 383 aaKnown RBP21.42■■□□□ 1.02
PKNOX1-204ENST00000456957 AMOTQ4VCS5 1084 aa21.42■■□□□ 1.02
PKNOX1-204ENST00000456957 ZCRB1Q8TBF4 217 aaKnown RBP21.42■■□□□ 1.02
PKNOX1-204ENST00000456957 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.42■■□□□ 1.02
PKNOX1-204ENST00000456957 A0A0G2JS52 829 aa21.41■■□□□ 1.02
PKNOX1-204ENST00000456957 MYT1Q01538 1121 aa21.41■■□□□ 1.02
PKNOX1-204ENST00000456957 SPG7Q9UQ90 795 aa21.41■■□□□ 1.02
PKNOX1-204ENST00000456957 SCN11AQ9UI33 1791 aa21.41■■□□□ 1.02
PKNOX1-204ENST00000456957 RGS12O14924 1447 aa21.4■■□□□ 1.02
PKNOX1-204ENST00000456957 DDB1Q16531 1140 aa21.4■■□□□ 1.02
PKNOX1-204ENST00000456957 SEPT12Q8IYM1 358 aa21.4■■□□□ 1.02
PKNOX1-204ENST00000456957 ADAMTS7Q9UKP4 1686 aa21.4■■□□□ 1.02
PKNOX1-204ENST00000456957 PCDH11XQ9BZA7 1347 aa21.39■■□□□ 1.01
PKNOX1-204ENST00000456957 PCDH11YQ9BZA8 1340 aa21.39■■□□□ 1.01
PKNOX1-204ENST00000456957 TOGARAM1Q9Y4F4 1720 aa21.39■■□□□ 1.01
PKNOX1-204ENST00000456957 SENP3-EIF4A1A0A087X0R7 540 aa21.39■■□□□ 1.01
PKNOX1-204ENST00000456957 APAF1O14727 1248 aa21.39■■□□□ 1.01
PKNOX1-204ENST00000456957 NFE2L2Q16236 605 aa21.39■■□□□ 1.01
PKNOX1-204ENST00000456957 ZNF530Q6P9A1 599 aaPredicted RBP21.39■■□□□ 1.01
PKNOX1-204ENST00000456957 GAS2L2Q8NHY3 880 aa21.39■■□□□ 1.01
PKNOX1-204ENST00000456957 EXOC5O00471 708 aa21.38■■□□□ 1.01
PKNOX1-204ENST00000456957 RRP7AQ9Y3A4 280 aaKnown RBP21.38■■□□□ 1.01
PKNOX1-204ENST00000456957 DOT1LQ8TEK3 1739 aa21.38■■□□□ 1.01
PKNOX1-204ENST00000456957 CYP27B1O15528 508 aa21.37■■□□□ 1.01
PKNOX1-204ENST00000456957 TMPOP42166 694 aaKnown RBP21.37■■□□□ 1.01
PKNOX1-204ENST00000456957 MAP3K5Q99683 1374 aa21.36■■□□□ 1.01
PKNOX1-204ENST00000456957 PHKG2P15735 406 aa21.35■■□□□ 1.01
PKNOX1-204ENST00000456957 DDX54Q8TDD1 881 aaKnown RBP21.35■■□□□ 1.01
PKNOX1-204ENST00000456957 RIPK4P57078 832 aa21.34■■□□□ 1.01
PKNOX1-204ENST00000456957 NEUROD2Q15784 382 aa21.34■■□□□ 1.01
PKNOX1-204ENST00000456957 AKAP4Q5JQC9 854 aa21.34■■□□□ 1.01
PKNOX1-204ENST00000456957 C1orf141Q5JVX7 400 aa21.34■■□□□ 1.01
PKNOX1-204ENST00000456957 IFNL2Q8IZJ0 200 aa21.34■■□□□ 1.01
PKNOX1-204ENST00000456957 ITGB4P16144 1822 aa21.34■■□□□ 1.01
PKNOX1-204ENST00000456957 SIPA1L3O60292 1781 aaPredicted RBP21.33■■□□□ 1.01
PKNOX1-204ENST00000456957 KDM6AO15550 1401 aaPredicted RBP21.33■■□□□ 1.01
PKNOX1-204ENST00000456957 MARCH10Q8NA82 808 aaPredicted RBP21.33■■□□□ 1.01
PKNOX1-204ENST00000456957 SBF2Q86WG5 1849 aa21.33■■□□□ 1.01
PKNOX1-204ENST00000456957 GNAT3A8MTJ3 354 aa21.32■■□□□ 1
PKNOX1-204ENST00000456957 PDE3BQ13370 1112 aa21.32■■□□□ 1
PKNOX1-204ENST00000456957 NKX1-1Q15270 411 aaPredicted RBP21.3■■□□□ 1
PKNOX1-204ENST00000456957 TRIM35Q9UPQ4 493 aa21.3■■□□□ 1
PKNOX1-204ENST00000456957 HNRNPUQ00839 825 aaKnown RBP eCLIP21.29■■□□□ 1
PKNOX1-204ENST00000456957 MPRIPQ6WCQ1 1025 aa21.29■■□□□ 1
PKNOX1-204ENST00000456957 SALL2Q9Y467 1007 aaPredicted RBP21.29■■□□□ 1
PKNOX1-204ENST00000456957 NHSQ6T4R5 1651 aa21.28■■□□□ 1
PKNOX1-204ENST00000456957 MRC1P22897 1456 aa21.28■■□□□ 1
PKNOX1-204ENST00000456957 HTATSF1O43719 755 aaKnown RBP21.28■■□□□ 1
PKNOX1-204ENST00000456957 HSP90AB1P08238 724 aaKnown RBP21.28■■□□□ 1
PKNOX1-204ENST00000456957 NCBP3Q53F19 620 aaKnown RBP21.28■■□□□ 1
PKNOX1-204ENST00000456957 KRT27Q7Z3Y8 459 aa21.28■■□□□ 1
PKNOX1-204ENST00000456957 LMOD3Q0VAK6 560 aa21.27■■□□□ 1
PKNOX1-204ENST00000456957 DCTN1Q14203 1278 aa21.27■■□□□ 1
PKNOX1-204ENST00000456957 CCDC27Q2M243 656 aa21.27■■□□□ 1
PKNOX1-204ENST00000456957 MCM10Q7L590 875 aa21.27■■□□□ 1
PKNOX1-204ENST00000456957 DCAF5Q96JK2 942 aa21.27■■□□□ 1
PKNOX1-204ENST00000456957 LGR6Q9HBX8 967 aa21.27■■□□□ 1
PKNOX1-204ENST00000456957 CEMIPQ8WUJ3 1361 aa21.26■□□□□ 0.99
PKNOX1-204ENST00000456957 KAT6BQ8WYB5 2073 aa21.26■□□□□ 0.99
PKNOX1-204ENST00000456957 RNMTO43148 476 aaKnown RBP21.26■□□□□ 0.99
PKNOX1-204ENST00000456957 FAM182BQ5T319 152 aa21.26■□□□□ 0.99
PKNOX1-204ENST00000456957 NGEFQ8N5V2 710 aa21.26■□□□□ 0.99
PKNOX1-204ENST00000456957 IL17REQ8NFR9 667 aa21.26■□□□□ 0.99
PKNOX1-204ENST00000456957 RTF1Q92541 710 aaKnown RBP21.26■□□□□ 0.99
PKNOX1-204ENST00000456957 BCL9O00512 1426 aa21.25■□□□□ 0.99
PKNOX1-204ENST00000456957 THUMPD2Q9BTF0 503 aaKnown RBP21.25■□□□□ 0.99
PKNOX1-204ENST00000456957 WWC1Q8IX03 1113 aa21.24■□□□□ 0.99
PKNOX1-204ENST00000456957 YTHDC1Q96MU7 727 aaKnown RBP21.24■□□□□ 0.99
PKNOX1-204ENST00000456957 PAPPAQ13219 1627 aa21.23■□□□□ 0.99
PKNOX1-204ENST00000456957 ZNF521Q96K83 1311 aa21.23■□□□□ 0.99
PKNOX1-204ENST00000456957 KDM3BQ7LBC6 1761 aa21.23■□□□□ 0.99
PKNOX1-204ENST00000456957 BTAF1O14981 1849 aa21.22■□□□□ 0.99
PKNOX1-204ENST00000456957 ERVV-2B6SEH9 535 aa21.2■□□□□ 0.98
PKNOX1-204ENST00000456957 ACSBG1Q96GR2 724 aa21.2■□□□□ 0.98
PKNOX1-204ENST00000456957 ZBED9Q6R2W3 1325 aa21.2■□□□□ 0.98
PKNOX1-204ENST00000456957 TNS1Q9HBL0 1735 aaKnown RBP21.19■□□□□ 0.98
PKNOX1-204ENST00000456957 FAM196AQ6ZSG2 479 aa21.19■□□□□ 0.98
PKNOX1-204ENST00000456957 SLC52A2Q9HAB3 445 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms