RNA–Protein interactions for RNA: ENST00000451876.5

CPSF4-207, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5 BASIC

Gene CPSF4, Length 1,644 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-207ENST00000451876 U2AF1L5P0DN76 240 aaPredicted RBP32.18■■■□□ 2.74
CPSF4-207ENST00000451876 U2AF1Q01081 240 aaKnown RBP eCLIP32.18■■■□□ 2.74
CPSF4-207ENST00000451876 MRS2Q9HD23 443 aa32.16■■■□□ 2.74
CPSF4-207ENST00000451876 TATP17735 454 aaPredicted RBP32.15■■■□□ 2.74
CPSF4-207ENST00000451876 DDB1Q16531 1140 aa32.15■■■□□ 2.74
CPSF4-207ENST00000451876 MIER1Q8N108 512 aa32.15■■■□□ 2.74
CPSF4-207ENST00000451876 RSPH6AQ9H0K4 717 aa32.13■■■□□ 2.73
CPSF4-207ENST00000451876 EXOC5O00471 708 aa32.1■■■□□ 2.73
CPSF4-207ENST00000451876 ILDR2Q71H61 639 aa32.1■■■□□ 2.73
CPSF4-207ENST00000451876 PRKAR2BP31323 418 aa32.08■■■□□ 2.73
CPSF4-207ENST00000451876 PLEKHG2Q9H7P9 1386 aa32.08■■■□□ 2.73
CPSF4-207ENST00000451876 WDR43Q15061 677 aaKnown RBP eCLIP32.08■■■□□ 2.73
CPSF4-207ENST00000451876 KRT27Q7Z3Y8 459 aa32.08■■■□□ 2.73
CPSF4-207ENST00000451876 ZCRB1Q8TBF4 217 aaKnown RBP32.08■■■□□ 2.73
CPSF4-207ENST00000451876 FAM182BQ5T319 152 aa32.07■■■□□ 2.72
CPSF4-207ENST00000451876 FCHSD2O94868 740 aa32.06■■■□□ 2.72
CPSF4-207ENST00000451876 PDE3BQ13370 1112 aa32.06■■■□□ 2.72
CPSF4-207ENST00000451876 ADAMTS8Q9UP79 889 aa32.06■■■□□ 2.72
CPSF4-207ENST00000451876 MARCH10Q8NA82 808 aaPredicted RBP32.04■■■□□ 2.72
CPSF4-207ENST00000451876 PNISRQ8TF01 805 aaKnown RBP32.04■■■□□ 2.72
CPSF4-207ENST00000451876 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.04■■■□□ 2.72
CPSF4-207ENST00000451876 DDX54Q8TDD1 881 aaKnown RBP32.03■■■□□ 2.72
CPSF4-207ENST00000451876 CCER2I3L3R5 266 aa32.02■■■□□ 2.72
CPSF4-207ENST00000451876 PHACTR3Q96KR7 559 aa32.02■■■□□ 2.72
CPSF4-207ENST00000451876 SPG7Q9UQ90 795 aa32.02■■■□□ 2.72
CPSF4-207ENST00000451876 PCDH11XQ9BZA7 1347 aa32.02■■■□□ 2.72
CPSF4-207ENST00000451876 PCDH11YQ9BZA8 1340 aa32.02■■■□□ 2.72
CPSF4-207ENST00000451876 CYP27B1O15528 508 aa32.01■■■□□ 2.72
CPSF4-207ENST00000451876 PLEKHO1Q53GL0 409 aaPredicted RBP32■■■□□ 2.71
CPSF4-207ENST00000451876 PLEKHF1Q96S99 279 aa32■■■□□ 2.71
CPSF4-207ENST00000451876 SBF2Q86WG5 1849 aa32■■■□□ 2.71
CPSF4-207ENST00000451876 VIRMAQ69YN4 1812 aaKnown RBP31.99■■■□□ 2.71
CPSF4-207ENST00000451876 AMOTQ4VCS5 1084 aa31.99■■■□□ 2.71
CPSF4-207ENST00000451876 MTHFSDQ2M296 383 aaKnown RBP31.98■■■□□ 2.71
CPSF4-207ENST00000451876 DOT1LQ8TEK3 1739 aa31.98■■■□□ 2.71
CPSF4-207ENST00000451876 TOGARAM1Q9Y4F4 1720 aa31.97■■■□□ 2.71
CPSF4-207ENST00000451876 DLG5Q8TDM6 1919 aa31.97■■■□□ 2.71
CPSF4-207ENST00000451876 ZNF530Q6P9A1 599 aaPredicted RBP31.97■■■□□ 2.71
CPSF4-207ENST00000451876 CCDC146Q8IYE0 955 aa31.97■■■□□ 2.71
CPSF4-207ENST00000451876 PHKG2P15735 406 aa31.94■■■□□ 2.7
CPSF4-207ENST00000451876 IFNL2Q8IZJ0 200 aa31.93■■■□□ 2.7
CPSF4-207ENST00000451876 FAM9BQ8IZU0 186 aa31.92■■■□□ 2.7
CPSF4-207ENST00000451876 KAT6BQ8WYB5 2073 aa31.92■■■□□ 2.7
CPSF4-207ENST00000451876 SCN11AQ9UI33 1791 aa31.91■■■□□ 2.7
CPSF4-207ENST00000451876 PNNQ9H307 717 aaKnown RBP31.91■■■□□ 2.7
CPSF4-207ENST00000451876 BCL9O00512 1426 aa31.91■■■□□ 2.7
CPSF4-207ENST00000451876 MAPK8IP3Q9UPT6 1336 aa31.91■■■□□ 2.7
CPSF4-207ENST00000451876 GAS2L2Q8NHY3 880 aa31.89■■■□□ 2.7
CPSF4-207ENST00000451876 NHSQ6T4R5 1651 aa31.89■■■□□ 2.7
CPSF4-207ENST00000451876 C1orf141Q5JVX7 400 aa31.89■■■□□ 2.7
CPSF4-207ENST00000451876 FAM196AQ6ZSG2 479 aa31.89■■■□□ 2.7
CPSF4-207ENST00000451876 RUNDC1Q96C34 613 aa31.89■■■□□ 2.7
CPSF4-207ENST00000451876 ITGB4P16144 1822 aa31.89■■■□□ 2.69
CPSF4-207ENST00000451876 KDM6AO15550 1401 aaPredicted RBP31.89■■■□□ 2.69
CPSF4-207ENST00000451876 ADAMTS7Q9UKP4 1686 aa31.88■■■□□ 2.69
CPSF4-207ENST00000451876 NEFMP07197 916 aa31.88■■■□□ 2.69
CPSF4-207ENST00000451876 NKX1-1Q15270 411 aaPredicted RBP31.87■■■□□ 2.69
CPSF4-207ENST00000451876 AKAP4Q5JQC9 854 aa31.87■■■□□ 2.69
CPSF4-207ENST00000451876 MAP3K5Q99683 1374 aa31.85■■■□□ 2.69
CPSF4-207ENST00000451876 TNS1Q9HBL0 1735 aaKnown RBP31.85■■■□□ 2.69
CPSF4-207ENST00000451876 ACSBG1Q96GR2 724 aa31.84■■■□□ 2.69
CPSF4-207ENST00000451876 MPRIPQ6WCQ1 1025 aa31.83■■■□□ 2.69
CPSF4-207ENST00000451876 NFE2L2Q16236 605 aa31.82■■■□□ 2.69
CPSF4-207ENST00000451876 KCNQ2O43526 872 aa31.81■■■□□ 2.68
CPSF4-207ENST00000451876 PTF1AQ7RTS3 328 aa31.81■■■□□ 2.68
CPSF4-207ENST00000451876 DCAF5Q96JK2 942 aa31.81■■■□□ 2.68
CPSF4-207ENST00000451876 RRP7AQ9Y3A4 280 aaKnown RBP31.81■■■□□ 2.68
CPSF4-207ENST00000451876 BTAF1O14981 1849 aa31.8■■■□□ 2.68
CPSF4-207ENST00000451876 GNAT3A8MTJ3 354 aa31.8■■■□□ 2.68
CPSF4-207ENST00000451876 HSP90AB1P08238 724 aaKnown RBP31.8■■■□□ 2.68
CPSF4-207ENST00000451876 TRIM37O94972 964 aa31.79■■■□□ 2.68
CPSF4-207ENST00000451876 TMPOP42166 694 aaKnown RBP31.79■■■□□ 2.68
CPSF4-207ENST00000451876 SENP3-EIF4A1A0A087X0R7 540 aa31.78■■■□□ 2.68
CPSF4-207ENST00000451876 APAF1O14727 1248 aa31.78■■■□□ 2.68
CPSF4-207ENST00000451876 LGR6Q9HBX8 967 aa31.78■■■□□ 2.68
CPSF4-207ENST00000451876 PRIM1P49642 420 aaKnown RBP31.77■■■□□ 2.68
CPSF4-207ENST00000451876 SIPA1L3O60292 1781 aaPredicted RBP31.76■■■□□ 2.68
CPSF4-207ENST00000451876 NEUROD2Q15784 382 aa31.76■■■□□ 2.67
CPSF4-207ENST00000451876 SYTL4Q96C24 671 aaPredicted RBP31.76■■■□□ 2.67
CPSF4-207ENST00000451876 MRC1P22897 1456 aa31.75■■■□□ 2.67
CPSF4-207ENST00000451876 RNMTO43148 476 aaKnown RBP31.75■■■□□ 2.67
CPSF4-207ENST00000451876 RIPK4P57078 832 aa31.75■■■□□ 2.67
CPSF4-207ENST00000451876 IL17REQ8NFR9 667 aa31.75■■■□□ 2.67
CPSF4-207ENST00000451876 DCTN1Q14203 1278 aa31.74■■■□□ 2.67
CPSF4-207ENST00000451876 MCM10Q7L590 875 aa31.74■■■□□ 2.67
CPSF4-207ENST00000451876 CEMIPQ8WUJ3 1361 aa31.73■■■□□ 2.67
CPSF4-207ENST00000451876 BCL11BQ9C0K0 894 aaPredicted RBP31.71■■■□□ 2.67
CPSF4-207ENST00000451876 ERVV-2B6SEH9 535 aa31.71■■■□□ 2.67
CPSF4-207ENST00000451876 RTF1Q92541 710 aaKnown RBP31.71■■■□□ 2.67
CPSF4-207ENST00000451876 UPF1Q92900 1129 aaKnown RBP eCLIP31.7■■■□□ 2.669e-7■■■■□ 23.4
CPSF4-207ENST00000451876 HTATSF1O43719 755 aaKnown RBP31.69■■■□□ 2.66
CPSF4-207ENST00000451876 THUMPD2Q9BTF0 503 aaKnown RBP31.68■■■□□ 2.66
CPSF4-207ENST00000451876 TRIM35Q9UPQ4 493 aa31.68■■■□□ 2.66
CPSF4-207ENST00000451876 PIGBQ92521 554 aa31.67■■■□□ 2.66
CPSF4-207ENST00000451876 TMOD3Q9NYL9 352 aa31.67■■■□□ 2.66
CPSF4-207ENST00000451876 CABP4P57796 275 aa31.67■■■□□ 2.66
CPSF4-207ENST00000451876 NFATC2IPQ8NCF5 419 aa31.67■■■□□ 2.66
CPSF4-207ENST00000451876 SLC52A2Q9HAB3 445 aa31.67■■■□□ 2.66
CPSF4-207ENST00000451876 PAPPAQ13219 1627 aa31.66■■■□□ 2.66
CPSF4-207ENST00000451876 RGPD3A6NKT7 1758 aaPredicted RBP31.63■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms