RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 U2AF1Q01081 240 aaKnown RBP eCLIP17.42■□□□□ 0.38
VPS33A-202ENST00000451053 TNS2Q63HR2 1409 aa17.41■□□□□ 0.38
VPS33A-202ENST00000451053 MRS2Q9HD23 443 aa17.41■□□□□ 0.38
VPS33A-202ENST00000451053 DDB1Q16531 1140 aa17.4■□□□□ 0.38
VPS33A-202ENST00000451053 PKD1L3Q7Z443 1732 aa17.39■□□□□ 0.37
VPS33A-202ENST00000451053 SHANK3Q9BYB0 1731 aa17.39■□□□□ 0.37
VPS33A-202ENST00000451053 EXOC5O00471 708 aa17.39■□□□□ 0.37
VPS33A-202ENST00000451053 ILDR2Q71H61 639 aa17.39■□□□□ 0.37
VPS33A-202ENST00000451053 RSPH6AQ9H0K4 717 aa17.39■□□□□ 0.37
VPS33A-202ENST00000451053 ZCRB1Q8TBF4 217 aaKnown RBP17.38■□□□□ 0.37
VPS33A-202ENST00000451053 PRKAR2BP31323 418 aa17.37■□□□□ 0.37
VPS33A-202ENST00000451053 PDE3BQ13370 1112 aa17.37■□□□□ 0.37
VPS33A-202ENST00000451053 WDR43Q15061 677 aaKnown RBP eCLIP17.37■□□□□ 0.37
VPS33A-202ENST00000451053 KRT27Q7Z3Y8 459 aa17.37■□□□□ 0.37
VPS33A-202ENST00000451053 FCHSD2O94868 740 aa17.36■□□□□ 0.37
VPS33A-202ENST00000451053 FAM182BQ5T319 152 aa17.36■□□□□ 0.37
VPS33A-202ENST00000451053 MARCH10Q8NA82 808 aaPredicted RBP17.36■□□□□ 0.37
VPS33A-202ENST00000451053 PLEKHG2Q9H7P9 1386 aa17.36■□□□□ 0.37
VPS33A-202ENST00000451053 DDX54Q8TDD1 881 aaKnown RBP17.35■□□□□ 0.37
VPS33A-202ENST00000451053 ADAMTS8Q9UP79 889 aa17.35■□□□□ 0.37
VPS33A-202ENST00000451053 PLEKHO1Q53GL0 409 aaPredicted RBP17.34■□□□□ 0.37
VPS33A-202ENST00000451053 PNISRQ8TF01 805 aaKnown RBP17.34■□□□□ 0.37
VPS33A-202ENST00000451053 PHACTR3Q96KR7 559 aa17.34■□□□□ 0.37
VPS33A-202ENST00000451053 PCDH11XQ9BZA7 1347 aa17.34■□□□□ 0.37
VPS33A-202ENST00000451053 PCDH11YQ9BZA8 1340 aa17.34■□□□□ 0.37
VPS33A-202ENST00000451053 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.34■□□□□ 0.37
VPS33A-202ENST00000451053 SPG7Q9UQ90 795 aa17.34■□□□□ 0.37
VPS33A-202ENST00000451053 CYP27B1O15528 508 aa17.33■□□□□ 0.36
VPS33A-202ENST00000451053 PLEKHF1Q96S99 279 aa17.33■□□□□ 0.36
VPS33A-202ENST00000451053 AMOTQ4VCS5 1084 aa17.32■□□□□ 0.36
VPS33A-202ENST00000451053 ZNF530Q6P9A1 599 aaPredicted RBP17.32■□□□□ 0.36
VPS33A-202ENST00000451053 MTHFSDQ2M296 383 aaKnown RBP17.31■□□□□ 0.36
VPS33A-202ENST00000451053 CCDC146Q8IYE0 955 aa17.31■□□□□ 0.36
VPS33A-202ENST00000451053 PHKG2P15735 406 aa17.3■□□□□ 0.36
VPS33A-202ENST00000451053 IFNL2Q8IZJ0 200 aa17.28■□□□□ 0.36
VPS33A-202ENST00000451053 FAM9BQ8IZU0 186 aa17.28■□□□□ 0.36
VPS33A-202ENST00000451053 PNNQ9H307 717 aaKnown RBP17.28■□□□□ 0.36
VPS33A-202ENST00000451053 MAPK8IP3Q9UPT6 1336 aa17.27■□□□□ 0.36
VPS33A-202ENST00000451053 C1orf141Q5JVX7 400 aa17.27■□□□□ 0.36
VPS33A-202ENST00000451053 FAM196AQ6ZSG2 479 aa17.27■□□□□ 0.36
VPS33A-202ENST00000451053 GAS2L2Q8NHY3 880 aa17.27■□□□□ 0.36
VPS33A-202ENST00000451053 RUNDC1Q96C34 613 aa17.27■□□□□ 0.36
VPS33A-202ENST00000451053 BCL9O00512 1426 aa17.27■□□□□ 0.35
VPS33A-202ENST00000451053 NEFMP07197 916 aa17.26■□□□□ 0.35
VPS33A-202ENST00000451053 NKX1-1Q15270 411 aaPredicted RBP17.26■□□□□ 0.35
VPS33A-202ENST00000451053 AKAP4Q5JQC9 854 aa17.26■□□□□ 0.35
VPS33A-202ENST00000451053 DOT1LQ8TEK3 1739 aa17.26■□□□□ 0.35
VPS33A-202ENST00000451053 TOGARAM1Q9Y4F4 1720 aa17.26■□□□□ 0.35
VPS33A-202ENST00000451053 KDM6AO15550 1401 aaPredicted RBP17.25■□□□□ 0.35
VPS33A-202ENST00000451053 ACSBG1Q96GR2 724 aa17.25■□□□□ 0.35
VPS33A-202ENST00000451053 MAP3K5Q99683 1374 aa17.25■□□□□ 0.35
VPS33A-202ENST00000451053 SBF2Q86WG5 1849 aa17.24■□□□□ 0.35
VPS33A-202ENST00000451053 MPRIPQ6WCQ1 1025 aa17.24■□□□□ 0.35
VPS33A-202ENST00000451053 HSP90AB1P08238 724 aaKnown RBP17.23■□□□□ 0.35
VPS33A-202ENST00000451053 NFE2L2Q16236 605 aa17.23■□□□□ 0.35
VPS33A-202ENST00000451053 PTF1AQ7RTS3 328 aa17.23■□□□□ 0.35
VPS33A-202ENST00000451053 NHSQ6T4R5 1651 aa17.23■□□□□ 0.35
VPS33A-202ENST00000451053 DLG5Q8TDM6 1919 aa17.22■□□□□ 0.35
VPS33A-202ENST00000451053 GNAT3A8MTJ3 354 aa17.22■□□□□ 0.35
VPS33A-202ENST00000451053 KCNQ2O43526 872 aa17.22■□□□□ 0.35
VPS33A-202ENST00000451053 TRIM37O94972 964 aa17.22■□□□□ 0.35
VPS33A-202ENST00000451053 DCAF5Q96JK2 942 aa17.22■□□□□ 0.35
VPS33A-202ENST00000451053 RRP7AQ9Y3A4 280 aaKnown RBP17.22■□□□□ 0.35
VPS33A-202ENST00000451053 ADAMTS7Q9UKP4 1686 aa17.22■□□□□ 0.35
VPS33A-202ENST00000451053 SCN11AQ9UI33 1791 aa17.21■□□□□ 0.35
VPS33A-202ENST00000451053 TMPOP42166 694 aaKnown RBP17.21■□□□□ 0.35
VPS33A-202ENST00000451053 LGR6Q9HBX8 967 aa17.21■□□□□ 0.35
VPS33A-202ENST00000451053 VIRMAQ69YN4 1812 aaKnown RBP17.2■□□□□ 0.34
VPS33A-202ENST00000451053 SENP3-EIF4A1A0A087X0R7 540 aa17.2■□□□□ 0.34
VPS33A-202ENST00000451053 APAF1O14727 1248 aa17.2■□□□□ 0.34
VPS33A-202ENST00000451053 RNMTO43148 476 aaKnown RBP17.2■□□□□ 0.34
VPS33A-202ENST00000451053 PRIM1P49642 420 aaKnown RBP17.2■□□□□ 0.34
VPS33A-202ENST00000451053 TNS1Q9HBL0 1735 aaKnown RBP17.2■□□□□ 0.34
VPS33A-202ENST00000451053 ITGB4P16144 1822 aa17.19■□□□□ 0.34
VPS33A-202ENST00000451053 RIPK4P57078 832 aa17.19■□□□□ 0.34
VPS33A-202ENST00000451053 NEUROD2Q15784 382 aa17.19■□□□□ 0.34
VPS33A-202ENST00000451053 IL17REQ8NFR9 667 aa17.19■□□□□ 0.34
VPS33A-202ENST00000451053 SYTL4Q96C24 671 aaPredicted RBP17.19■□□□□ 0.34
VPS33A-202ENST00000451053 DCTN1Q14203 1278 aa17.18■□□□□ 0.34
VPS33A-202ENST00000451053 MCM10Q7L590 875 aa17.18■□□□□ 0.34
VPS33A-202ENST00000451053 BCL11BQ9C0K0 894 aaPredicted RBP17.18■□□□□ 0.34
VPS33A-202ENST00000451053 MRC1P22897 1456 aa17.18■□□□□ 0.34
VPS33A-202ENST00000451053 CEMIPQ8WUJ3 1361 aa17.17■□□□□ 0.34
VPS33A-202ENST00000451053 BTAF1O14981 1849 aa17.17■□□□□ 0.34
VPS33A-202ENST00000451053 ERVV-2B6SEH9 535 aa17.17■□□□□ 0.34
VPS33A-202ENST00000451053 UPF1Q92900 1129 aaKnown RBP eCLIP17.17■□□□□ 0.34
VPS33A-202ENST00000451053 HTATSF1O43719 755 aaKnown RBP17.16■□□□□ 0.34
VPS33A-202ENST00000451053 CABP4P57796 275 aa17.16■□□□□ 0.34
VPS33A-202ENST00000451053 PIGBQ92521 554 aa17.16■□□□□ 0.34
VPS33A-202ENST00000451053 RTF1Q92541 710 aaKnown RBP17.16■□□□□ 0.34
VPS33A-202ENST00000451053 TMOD3Q9NYL9 352 aa17.16■□□□□ 0.34
VPS33A-202ENST00000451053 KAT6BQ8WYB5 2073 aa17.16■□□□□ 0.34
VPS33A-202ENST00000451053 THUMPD2Q9BTF0 503 aaKnown RBP17.15■□□□□ 0.34
VPS33A-202ENST00000451053 SLC52A2Q9HAB3 445 aa17.15■□□□□ 0.34
VPS33A-202ENST00000451053 TRIM35Q9UPQ4 493 aa17.15■□□□□ 0.34
VPS33A-202ENST00000451053 NFATC2IPQ8NCF5 419 aa17.14■□□□□ 0.33
VPS33A-202ENST00000451053 SIPA1L3O60292 1781 aaPredicted RBP17.13■□□□□ 0.33
VPS33A-202ENST00000451053 APBA3O96018 575 aa17.13■□□□□ 0.33
VPS33A-202ENST00000451053 LMOD3Q0VAK6 560 aa17.13■□□□□ 0.33
VPS33A-202ENST00000451053 TEFQ10587 303 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms