RNA–Protein interactions for RNA: ENST00000448572.1

SSBP3-209, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 454 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-209ENST00000448572 RTL1A6NKG5 1358 aa14.5□□□□□ -0.09
SSBP3-209ENST00000448572 TONSLQ96HA7 1378 aa14.5□□□□□ -0.09
SSBP3-209ENST00000448572 PNPLA7Q6ZV29 1317 aa14.5□□□□□ -0.09
SSBP3-209ENST00000448572 MSH5O43196 834 aa14.5□□□□□ -0.09
SSBP3-209ENST00000448572 PRIM1P49642 420 aaKnown RBP14.5□□□□□ -0.09
SSBP3-209ENST00000448572 RAPGEF4Q8WZA2 1011 aa14.5□□□□□ -0.09
SSBP3-209ENST00000448572 LTV1Q96GA3 475 aaPredicted RBP14.5□□□□□ -0.09
SSBP3-209ENST00000448572 BTAF1O14981 1849 aa14.5□□□□□ -0.09
SSBP3-209ENST00000448572 CD163L1Q9NR16 1453 aa14.5□□□□□ -0.09
SSBP3-209ENST00000448572 LTN1O94822 1766 aa14.49□□□□□ -0.09
SSBP3-209ENST00000448572 HOXC9P31274 260 aa14.48□□□□□ -0.09
SSBP3-209ENST00000448572 QSER1Q2KHR3 1735 aa14.46□□□□□ -0.09
SSBP3-209ENST00000448572 MAP3K19Q56UN5 1328 aa14.46□□□□□ -0.09
SSBP3-209ENST00000448572 TATP17735 454 aaPredicted RBP14.46□□□□□ -0.09
SSBP3-209ENST00000448572 CDCA8Q53HL2 280 aa14.46□□□□□ -0.09
SSBP3-209ENST00000448572 NSD3Q9BZ95 1437 aa14.46□□□□□ -0.09
SSBP3-209ENST00000448572 PCDH11XQ9BZA7 1347 aa14.45□□□□□ -0.1
SSBP3-209ENST00000448572 PCDH11YQ9BZA8 1340 aa14.45□□□□□ -0.1
SSBP3-209ENST00000448572 SMARCC1Q92922 1105 aaPredicted RBP14.45□□□□□ -0.1
SSBP3-209ENST00000448572 CD2APQ9Y5K6 639 aa14.45□□□□□ -0.1
SSBP3-209ENST00000448572 KIF24Q5T7B8 1368 aa14.44□□□□□ -0.1
SSBP3-209ENST00000448572 KAT6BQ8WYB5 2073 aa14.43□□□□□ -0.1
SSBP3-209ENST00000448572 TMF1P82094 1093 aa14.42□□□□□ -0.1
SSBP3-209ENST00000448572 NLGN2Q8NFZ4 835 aa14.41□□□□□ -0.1
SSBP3-209ENST00000448572 GPBP1L1Q9HC44 474 aaPredicted RBP14.41□□□□□ -0.1
SSBP3-209ENST00000448572 NSD2O96028 1365 aa14.4□□□□□ -0.1
SSBP3-209ENST00000448572 COL23A1Q86Y22 540 aaPredicted RBP14.4□□□□□ -0.1
SSBP3-209ENST00000448572 AK7Q96M32 723 aa14.4□□□□□ -0.1
SSBP3-209ENST00000448572 INSRP06213 1382 aa14.39□□□□□ -0.11
SSBP3-209ENST00000448572 FLT4P35916 1363 aa14.39□□□□□ -0.11
SSBP3-209ENST00000448572 PALLDQ8WX93 1383 aa14.39□□□□□ -0.11
SSBP3-209ENST00000448572 ST20-MTHFSA0A0A6YYL1 179 aa14.39□□□□□ -0.11
SSBP3-209ENST00000448572 KCNQ4P56696 695 aa14.39□□□□□ -0.11
SSBP3-209ENST00000448572 NBPF6Q5VWK0 638 aa14.39□□□□□ -0.11
SSBP3-209ENST00000448572 NBPF4Q96M43 638 aa14.39□□□□□ -0.11
SSBP3-209ENST00000448572 MEGF6O75095 1541 aa14.39□□□□□ -0.11
SSBP3-209ENST00000448572 COL24A1Q17RW2 1714 aa14.38□□□□□ -0.11
SSBP3-209ENST00000448572 TESK2Q96S53 571 aa14.38□□□□□ -0.11
SSBP3-209ENST00000448572 LY75O60449 1722 aa14.38□□□□□ -0.11
SSBP3-209ENST00000448572 DOT1LQ8TEK3 1739 aa14.38□□□□□ -0.11
SSBP3-209ENST00000448572 IFFO2Q5TF58 517 aa14.37□□□□□ -0.11
SSBP3-209ENST00000448572 MPRIPQ6WCQ1 1025 aa14.37□□□□□ -0.11
SSBP3-209ENST00000448572 SPG7Q9UQ90 795 aa14.37□□□□□ -0.11
SSBP3-209ENST00000448572 UTRNP46939 3433 aa14.37□□□□□ -0.11
SSBP3-209ENST00000448572 FYB1O15117 783 aa14.36□□□□□ -0.11
SSBP3-209ENST00000448572 YBX3P16989 372 aaKnown RBP eCLIP14.36□□□□□ -0.11
SSBP3-209ENST00000448572 SSFA2P28290 1259 aa14.36□□□□□ -0.11
SSBP3-209ENST00000448572 RRS1Q15050 365 aaKnown RBP14.36□□□□□ -0.11
SSBP3-209ENST00000448572 ATP10DQ9P241 1426 aa14.35□□□□□ -0.11
SSBP3-209ENST00000448572 MSL1Q68DK7 614 aa14.35□□□□□ -0.11
SSBP3-209ENST00000448572 GGNBP2Q9H3C7 697 aa14.35□□□□□ -0.11
SSBP3-209ENST00000448572 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.34□□□□□ -0.11
SSBP3-209ENST00000448572 USHBP1Q8N6Y0 703 aa14.33□□□□□ -0.12
SSBP3-209ENST00000448572 HSPA6P17066 643 aa14.32□□□□□ -0.12
SSBP3-209ENST00000448572 HSP90AB2PQ58FF8 381 aa14.32□□□□□ -0.12
SSBP3-209ENST00000448572 TMOD3Q9NYL9 352 aa14.32□□□□□ -0.12
SSBP3-209ENST00000448572 PLEKHG2Q9H7P9 1386 aa14.32□□□□□ -0.12
SSBP3-209ENST00000448572 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.31□□□□□ -0.12
SSBP3-209ENST00000448572 NKX1-1Q15270 411 aaPredicted RBP14.31□□□□□ -0.12
SSBP3-209ENST00000448572 SHANK3Q9BYB0 1731 aa14.31□□□□□ -0.12
SSBP3-209ENST00000448572 C5P01031 1676 aa14.3□□□□□ -0.12
SSBP3-209ENST00000448572 LOC102724428A0A0B4J2F2 783 aa14.3□□□□□ -0.12
SSBP3-209ENST00000448572 PHF14O94880 888 aa14.3□□□□□ -0.12
SSBP3-209ENST00000448572 FBLN1P23142 703 aa14.3□□□□□ -0.12
SSBP3-209ENST00000448572 SIK1P57059 783 aa14.3□□□□□ -0.12
SSBP3-209ENST00000448572 IGSF1Q8N6C5 1336 aa14.3□□□□□ -0.12
SSBP3-209ENST00000448572 CYP27B1O15528 508 aa14.29□□□□□ -0.12
SSBP3-209ENST00000448572 IFNL2Q8IZJ0 200 aa14.29□□□□□ -0.12
SSBP3-209ENST00000448572 TUBGCP6Q96RT7 1819 aa14.29□□□□□ -0.12
SSBP3-209ENST00000448572 PPM1GO15355 546 aaPredicted RBP14.28□□□□□ -0.12
SSBP3-209ENST00000448572 ADCY9O60503 1353 aa14.28□□□□□ -0.12
SSBP3-209ENST00000448572 HSP90AB1P08238 724 aaKnown RBP14.28□□□□□ -0.12
SSBP3-209ENST00000448572 NLGN1Q8N2Q7 840 aa14.28□□□□□ -0.12
SSBP3-209ENST00000448572 GNPATO15228 680 aa14.27□□□□□ -0.13
SSBP3-209ENST00000448572 ADRA2BP18089 450 aa14.27□□□□□ -0.13
SSBP3-209ENST00000448572 ATP6V1AP38606 617 aa14.27□□□□□ -0.13
SSBP3-209ENST00000448572 TGFB2P61812 414 aa14.27□□□□□ -0.13
SSBP3-209ENST00000448572 PIGBQ92521 554 aa14.27□□□□□ -0.13
SSBP3-209ENST00000448572 C4BP0C0L5 1744 aa14.27□□□□□ -0.13
SSBP3-209ENST00000448572 WASHC2AQ641Q2 1341 aa14.26□□□□□ -0.13
SSBP3-209ENST00000448572 ZNF526Q8TF50 670 aaPredicted RBP14.26□□□□□ -0.13
SSBP3-209ENST00000448572 RTCBQ9Y3I0 505 aaKnown RBP14.26□□□□□ -0.13
SSBP3-209ENST00000448572 APLP1P51693 650 aa14.25□□□□□ -0.13
SSBP3-209ENST00000448572 TRAPPC3LQ5T215 181 aa14.25□□□□□ -0.13
SSBP3-209ENST00000448572 CCDC87Q9NVE4 849 aa14.24□□□□□ -0.13
SSBP3-209ENST00000448572 EMILIN1Q9Y6C2 1016 aa14.24□□□□□ -0.13
SSBP3-209ENST00000448572 NCAPD2Q15021 1401 aa14.24□□□□□ -0.13
SSBP3-209ENST00000448572 MMP10P09238 476 aa14.23□□□□□ -0.13
SSBP3-209ENST00000448572 TIMELESSQ9UNS1 1208 aa14.23□□□□□ -0.13
SSBP3-209ENST00000448572 RGPD2P0DJD1 1756 aa14.23□□□□□ -0.13
SSBP3-209ENST00000448572 ERVV-2B6SEH9 535 aa14.22□□□□□ -0.13
SSBP3-209ENST00000448572 TOMM70O94826 608 aa14.22□□□□□ -0.13
SSBP3-209ENST00000448572 PHKG2P15735 406 aa14.22□□□□□ -0.13
SSBP3-209ENST00000448572 RC3H1Q5TC82 1133 aaKnown RBP14.22□□□□□ -0.13
SSBP3-209ENST00000448572 LINC00116Q8NCU8 138 aa14.22□□□□□ -0.13
SSBP3-209ENST00000448572 GOLGB1Q14789 3259 aaKnown RBP14.22□□□□□ -0.13
SSBP3-209ENST00000448572 PKD1L3Q7Z443 1732 aa14.21□□□□□ -0.13
SSBP3-209ENST00000448572 TAF1LQ8IZX4 1826 aa14.21□□□□□ -0.13
SSBP3-209ENST00000448572 KIF20BQ96Q89 1820 aa14.21□□□□□ -0.13
SSBP3-209ENST00000448572 RFC4P35249 363 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms