RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CCDC9Q9Y3X0 531 aaKnown RBP16.83■□□□□ 0.28
USP40-205ENST00000430158 USP35Q9P2H5 1018 aa16.82■□□□□ 0.28
USP40-205ENST00000430158 PARP4Q9UKK3 1724 aaKnown RBP16.82■□□□□ 0.28
USP40-205ENST00000430158 SEPT12Q8IYM1 358 aa16.81■□□□□ 0.28
USP40-205ENST00000430158 IGSF1Q8N6C5 1336 aa16.79■□□□□ 0.28
USP40-205ENST00000430158 USHBP1Q8N6Y0 703 aa16.78■□□□□ 0.28
USP40-205ENST00000430158 MYBBP1AQ9BQG0 1328 aaKnown RBP16.77■□□□□ 0.28
USP40-205ENST00000430158 MEGF6O75095 1541 aa16.77■□□□□ 0.28
USP40-205ENST00000430158 CDCA7Q9BWT1 371 aaPredicted RBP16.77■□□□□ 0.28
USP40-205ENST00000430158 LRRC37A3O60309 1634 aa16.77■□□□□ 0.27
USP40-205ENST00000430158 KDRP35968 1356 aa16.76■□□□□ 0.27
USP40-205ENST00000430158 DIAPH1O60610 1272 aaKnown RBP16.75■□□□□ 0.27
USP40-205ENST00000430158 IL2RBP14784 551 aa16.75■□□□□ 0.27
USP40-205ENST00000430158 SHANK3Q9BYB0 1731 aa16.75■□□□□ 0.27
USP40-205ENST00000430158 EP400Q96L91 3159 aa16.74■□□□□ 0.27
USP40-205ENST00000430158 OVOS2A0A0G2JMS6 1433 aa16.74■□□□□ 0.27
USP40-205ENST00000430158 AEBP1Q8IUX7 1158 aa16.74■□□□□ 0.27
USP40-205ENST00000430158 ATF5Q9Y2D1 282 aaPredicted RBP16.73■□□□□ 0.27
USP40-205ENST00000430158 KRT27Q7Z3Y8 459 aa16.72■□□□□ 0.27
USP40-205ENST00000430158 PKD1L3Q7Z443 1732 aa16.72■□□□□ 0.27
USP40-205ENST00000430158 TNS2Q63HR2 1409 aa16.71■□□□□ 0.27
USP40-205ENST00000430158 MARCH10Q8NA82 808 aaPredicted RBP16.71■□□□□ 0.27
USP40-205ENST00000430158 CFAP53Q96M91 514 aa16.71■□□□□ 0.27
USP40-205ENST00000430158 PLEKHG2Q9H7P9 1386 aa16.71■□□□□ 0.27
USP40-205ENST00000430158 DDB1Q16531 1140 aa16.7■□□□□ 0.26
USP40-205ENST00000430158 SULT6B1Q6IMI4 303 aa16.7■□□□□ 0.26
USP40-205ENST00000430158 EXOC5O00471 708 aa16.69■□□□□ 0.26
USP40-205ENST00000430158 CCDC184Q52MB2 194 aa16.69■□□□□ 0.26
USP40-205ENST00000430158 AKT1S1Q96B36 256 aa16.69■□□□□ 0.26
USP40-205ENST00000430158 BCL9O00512 1426 aa16.69■□□□□ 0.26
USP40-205ENST00000430158 TATP17735 454 aaPredicted RBP16.68■□□□□ 0.26
USP40-205ENST00000430158 FAM182BQ5T319 152 aa16.68■□□□□ 0.26
USP40-205ENST00000430158 ZCRB1Q8TBF4 217 aaKnown RBP16.68■□□□□ 0.26
USP40-205ENST00000430158 RAPGEF4Q8WZA2 1011 aa16.68■□□□□ 0.26
USP40-205ENST00000430158 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.68■□□□□ 0.262e-7■■■□□ 16.1
USP40-205ENST00000430158 SBF2Q86WG5 1849 aa16.68■□□□□ 0.26
USP40-205ENST00000430158 A0A0G2JS52 829 aa16.67■□□□□ 0.26
USP40-205ENST00000430158 ANP32CO43423 234 aa16.67■□□□□ 0.26
USP40-205ENST00000430158 MYT1Q01538 1121 aa16.67■□□□□ 0.26
USP40-205ENST00000430158 HMOX1P09601 288 aa16.66■□□□□ 0.26
USP40-205ENST00000430158 PDE3BQ13370 1112 aa16.66■□□□□ 0.26
USP40-205ENST00000430158 RSPH6AQ9H0K4 717 aa16.66■□□□□ 0.26
USP40-205ENST00000430158 KAT6BQ8WYB5 2073 aa16.66■□□□□ 0.26
USP40-205ENST00000430158 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
USP40-205ENST00000430158 CYP27B1O15528 508 aa16.65■□□□□ 0.26
USP40-205ENST00000430158 NUDCQ9Y266 331 aa16.65■□□□□ 0.26
USP40-205ENST00000430158 FCHSD2O94868 740 aa16.63■□□□□ 0.25
USP40-205ENST00000430158 U2AF1L5P0DN76 240 aaPredicted RBP16.63■□□□□ 0.25
USP40-205ENST00000430158 U2AF1Q01081 240 aaKnown RBP eCLIP16.63■□□□□ 0.25
USP40-205ENST00000430158 NKX1-1Q15270 411 aaPredicted RBP16.62■□□□□ 0.25
USP40-205ENST00000430158 FAM196AQ6ZSG2 479 aa16.62■□□□□ 0.25
USP40-205ENST00000430158 SP7Q8TDD2 431 aaPredicted RBP16.62■□□□□ 0.25
USP40-205ENST00000430158 PHACTR3Q96KR7 559 aa16.62■□□□□ 0.25
USP40-205ENST00000430158 PLEKHF1Q96S99 279 aa16.62■□□□□ 0.25
USP40-205ENST00000430158 AMOTQ4VCS5 1084 aa16.61■□□□□ 0.25
USP40-205ENST00000430158 DDX54Q8TDD1 881 aaKnown RBP16.61■□□□□ 0.25
USP40-205ENST00000430158 UPF1Q92900 1129 aaKnown RBP eCLIP16.61■□□□□ 0.25
USP40-205ENST00000430158 SPG7Q9UQ90 795 aa16.61■□□□□ 0.25
USP40-205ENST00000430158 PCDH11XQ9BZA7 1347 aa16.61■□□□□ 0.25
USP40-205ENST00000430158 PCDH11YQ9BZA8 1340 aa16.61■□□□□ 0.25
USP40-205ENST00000430158 PHKG2P15735 406 aa16.6■□□□□ 0.25
USP40-205ENST00000430158 PRKAR2BP31323 418 aa16.6■□□□□ 0.25
USP40-205ENST00000430158 PLEKHO1Q53GL0 409 aaPredicted RBP16.6■□□□□ 0.25
USP40-205ENST00000430158 DIEXFQ68CQ4 756 aaKnown RBP16.6■□□□□ 0.25
USP40-205ENST00000430158 PTF1AQ7RTS3 328 aa16.6■□□□□ 0.25
USP40-205ENST00000430158 MTHFSDQ2M296 383 aaKnown RBP16.59■□□□□ 0.25
USP40-205ENST00000430158 PNISRQ8TF01 805 aaKnown RBP16.59■□□□□ 0.25
USP40-205ENST00000430158 TOGARAM1Q9Y4F4 1720 aa16.59■□□□□ 0.25
USP40-205ENST00000430158 SOCS7O14512 581 aa16.58■□□□□ 0.24
USP40-205ENST00000430158 FOXD4L1Q9NU39 408 aa16.58■□□□□ 0.24
USP40-205ENST00000430158 ADAMTS8Q9UP79 889 aa16.58■□□□□ 0.24
USP40-205ENST00000430158 ZBTB12Q9Y330 459 aaPredicted RBP16.58■□□□□ 0.24
USP40-205ENST00000430158 ADAMTS7Q9UKP4 1686 aa16.58■□□□□ 0.24
USP40-205ENST00000430158 TNS1Q9HBL0 1735 aaKnown RBP16.58■□□□□ 0.24
USP40-205ENST00000430158 ITGB4P16144 1822 aa16.57■□□□□ 0.24
USP40-205ENST00000430158 NHSQ6T4R5 1651 aa16.57■□□□□ 0.24
USP40-205ENST00000430158 ZNF530Q6P9A1 599 aaPredicted RBP16.57■□□□□ 0.24
USP40-205ENST00000430158 IFNL2Q8IZJ0 200 aa16.57■□□□□ 0.24
USP40-205ENST00000430158 VIRMAQ69YN4 1812 aaKnown RBP16.56■□□□□ 0.24
USP40-205ENST00000430158 DOT1LQ8TEK3 1739 aa16.56■□□□□ 0.24
USP40-205ENST00000430158 KDM6AO15550 1401 aaPredicted RBP16.56■□□□□ 0.24
USP40-205ENST00000430158 KCNQ2O43526 872 aa16.56■□□□□ 0.24
USP40-205ENST00000430158 REM2Q8IYK8 340 aaPredicted RBP16.56■□□□□ 0.24
USP40-205ENST00000430158 TRIM37O94972 964 aa16.55■□□□□ 0.24
USP40-205ENST00000430158 SCN11AQ9UI33 1791 aa16.55■□□□□ 0.24
USP40-205ENST00000430158 DLG5Q8TDM6 1919 aa16.55■□□□□ 0.24
USP40-205ENST00000430158 AKAP4Q5JQC9 854 aa16.54■□□□□ 0.24
USP40-205ENST00000430158 CCDC125Q86Z20 511 aa16.54■□□□□ 0.24
USP40-205ENST00000430158 BCL11BQ9C0K0 894 aaPredicted RBP16.54■□□□□ 0.24
USP40-205ENST00000430158 MRS2Q9HD23 443 aa16.54■□□□□ 0.24
USP40-205ENST00000430158 MIER1Q8N108 512 aa16.53■□□□□ 0.24
USP40-205ENST00000430158 ACSBG1Q96GR2 724 aa16.53■□□□□ 0.24
USP40-205ENST00000430158 BTAF1O14981 1849 aa16.53■□□□□ 0.24
USP40-205ENST00000430158 CCER2I3L3R5 266 aa16.52■□□□□ 0.24
USP40-205ENST00000430158 PRIM1P49642 420 aaKnown RBP16.52■□□□□ 0.24
USP40-205ENST00000430158 PIP4P2Q8N4L2 257 aa16.52■□□□□ 0.24
USP40-205ENST00000430158 GAS2L2Q8NHY3 880 aa16.52■□□□□ 0.24
USP40-205ENST00000430158 WDR43Q15061 677 aaKnown RBP eCLIP16.51■□□□□ 0.23
USP40-205ENST00000430158 DCAF5Q96JK2 942 aa16.51■□□□□ 0.23
USP40-205ENST00000430158 LGR6Q9HBX8 967 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms