RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 RAPGEF4Q8WZA2 1011 aa20.74■□□□□ 0.91
SHOX2-202ENST00000425436 RGPD1P0DJD0 1748 aa20.74■□□□□ 0.91
SHOX2-202ENST00000425436 CDCA7Q9BWT1 371 aaPredicted RBP20.73■□□□□ 0.91
SHOX2-202ENST00000425436 NUDCQ9Y266 331 aa20.73■□□□□ 0.91
SHOX2-202ENST00000425436 EXOC5O00471 708 aa20.73■□□□□ 0.91
SHOX2-202ENST00000425436 DDB1Q16531 1140 aa20.73■□□□□ 0.91
SHOX2-202ENST00000425436 FAM182BQ5T319 152 aa20.73■□□□□ 0.91
SHOX2-202ENST00000425436 MEGF6O75095 1541 aa20.73■□□□□ 0.91
SHOX2-202ENST00000425436 TATP17735 454 aaPredicted RBP20.72■□□□□ 0.91
SHOX2-202ENST00000425436 NCAPD2Q15021 1401 aa20.71■□□□□ 0.91
SHOX2-202ENST00000425436 U2AF1L5P0DN76 240 aaPredicted RBP20.71■□□□□ 0.91
SHOX2-202ENST00000425436 U2AF1Q01081 240 aaKnown RBP eCLIP20.71■□□□□ 0.91
SHOX2-202ENST00000425436 PDE3BQ13370 1112 aa20.71■□□□□ 0.91
SHOX2-202ENST00000425436 PARP4Q9UKK3 1724 aaKnown RBP20.71■□□□□ 0.91
SHOX2-202ENST00000425436 KRT27Q7Z3Y8 459 aa20.7■□□□□ 0.9
SHOX2-202ENST00000425436 LRRC37A3O60309 1634 aa20.69■□□□□ 0.9
SHOX2-202ENST00000425436 ADRA2BP18089 450 aa20.68■□□□□ 0.9
SHOX2-202ENST00000425436 ZCRB1Q8TBF4 217 aaKnown RBP20.68■□□□□ 0.9
SHOX2-202ENST00000425436 DDX54Q8TDD1 881 aaKnown RBP20.68■□□□□ 0.9
SHOX2-202ENST00000425436 OVOS2A0A0G2JMS6 1433 aa20.67■□□□□ 0.9
SHOX2-202ENST00000425436 KDRP35968 1356 aa20.67■□□□□ 0.9
SHOX2-202ENST00000425436 EP400Q96L91 3159 aa20.67■□□□□ 0.9
SHOX2-202ENST00000425436 MARCH10Q8NA82 808 aaPredicted RBP20.67■□□□□ 0.9
SHOX2-202ENST00000425436 NEFLP07196 543 aa20.65■□□□□ 0.9
SHOX2-202ENST00000425436 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.9
SHOX2-202ENST00000425436 TNS2Q63HR2 1409 aa20.64■□□□□ 0.89
SHOX2-202ENST00000425436 PRKAR2BP31323 418 aa20.63■□□□□ 0.89
SHOX2-202ENST00000425436 WDR43Q15061 677 aaKnown RBP eCLIP20.63■□□□□ 0.89
SHOX2-202ENST00000425436 SPG7Q9UQ90 795 aa20.63■□□□□ 0.89
SHOX2-202ENST00000425436 SHANK3Q9BYB0 1731 aa20.62■□□□□ 0.89
SHOX2-202ENST00000425436 FCHSD2O94868 740 aa20.62■□□□□ 0.89
SHOX2-202ENST00000425436 PLEKHO1Q53GL0 409 aaPredicted RBP20.62■□□□□ 0.89
SHOX2-202ENST00000425436 PHACTR3Q96KR7 559 aa20.62■□□□□ 0.89
SHOX2-202ENST00000425436 ADAMTS8Q9UP79 889 aa20.62■□□□□ 0.89
SHOX2-202ENST00000425436 CYP27B1O15528 508 aa20.61■□□□□ 0.89
SHOX2-202ENST00000425436 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.6■□□□□ 0.89
SHOX2-202ENST00000425436 PKD1L3Q7Z443 1732 aa20.6■□□□□ 0.89
SHOX2-202ENST00000425436 KAT6BQ8WYB5 2073 aa20.6■□□□□ 0.89
SHOX2-202ENST00000425436 AMOTQ4VCS5 1084 aa20.59■□□□□ 0.89
SHOX2-202ENST00000425436 PCDH11XQ9BZA7 1347 aa20.59■□□□□ 0.89
SHOX2-202ENST00000425436 PCDH11YQ9BZA8 1340 aa20.59■□□□□ 0.89
SHOX2-202ENST00000425436 MTHFSDQ2M296 383 aaKnown RBP20.58■□□□□ 0.89
SHOX2-202ENST00000425436 ZNF530Q6P9A1 599 aaPredicted RBP20.58■□□□□ 0.89
SHOX2-202ENST00000425436 FAM196AQ6ZSG2 479 aa20.58■□□□□ 0.88
SHOX2-202ENST00000425436 CCDC146Q8IYE0 955 aa20.57■□□□□ 0.88
SHOX2-202ENST00000425436 PLEKHF1Q96S99 279 aa20.57■□□□□ 0.88
SHOX2-202ENST00000425436 SUPT16HQ9Y5B9 1047 aaKnown RBP20.57■□□□□ 0.88
SHOX2-202ENST00000425436 PHKG2P15735 406 aa20.56■□□□□ 0.88
SHOX2-202ENST00000425436 IFNL2Q8IZJ0 200 aa20.56■□□□□ 0.88
SHOX2-202ENST00000425436 ACSBG1Q96GR2 724 aa20.56■□□□□ 0.88
SHOX2-202ENST00000425436 TRIM37O94972 964 aa20.53■□□□□ 0.88
SHOX2-202ENST00000425436 C1orf141Q5JVX7 400 aa20.53■□□□□ 0.88
SHOX2-202ENST00000425436 PTF1AQ7RTS3 328 aa20.53■□□□□ 0.88
SHOX2-202ENST00000425436 PNNQ9H307 717 aaKnown RBP20.53■□□□□ 0.88
SHOX2-202ENST00000425436 KCNQ2O43526 872 aa20.53■□□□□ 0.88
SHOX2-202ENST00000425436 PLEKHG2Q9H7P9 1386 aa20.52■□□□□ 0.88
SHOX2-202ENST00000425436 SBF2Q86WG5 1849 aa20.52■□□□□ 0.88
SHOX2-202ENST00000425436 NEFMP07197 916 aa20.52■□□□□ 0.87
SHOX2-202ENST00000425436 ERICH6BQ5W0A0 696 aa20.52■□□□□ 0.87
SHOX2-202ENST00000425436 MPRIPQ6WCQ1 1025 aa20.52■□□□□ 0.87
SHOX2-202ENST00000425436 NKX1-1Q15270 411 aaPredicted RBP20.51■□□□□ 0.87
SHOX2-202ENST00000425436 AKAP4Q5JQC9 854 aa20.51■□□□□ 0.87
SHOX2-202ENST00000425436 GAS2L2Q8NHY3 880 aa20.51■□□□□ 0.87
SHOX2-202ENST00000425436 SYTL4Q96C24 671 aaPredicted RBP20.51■□□□□ 0.87
SHOX2-202ENST00000425436 MAPK8IP3Q9UPT6 1336 aa20.51■□□□□ 0.87
SHOX2-202ENST00000425436 PRIM1P49642 420 aaKnown RBP20.5■□□□□ 0.87
SHOX2-202ENST00000425436 SENP3-EIF4A1A0A087X0R7 540 aa20.49■□□□□ 0.87
SHOX2-202ENST00000425436 FKBP8Q14318 412 aa20.49■□□□□ 0.87
SHOX2-202ENST00000425436 PELP1Q8IZL8 1130 aaKnown RBP20.49■□□□□ 0.87
SHOX2-202ENST00000425436 UPF1Q92900 1129 aaKnown RBP eCLIP20.49■□□□□ 0.87
SHOX2-202ENST00000425436 RUNDC1Q96C34 613 aa20.49■□□□□ 0.87
SHOX2-202ENST00000425436 LGR6Q9HBX8 967 aa20.49■□□□□ 0.87
SHOX2-202ENST00000425436 BCL9O00512 1426 aa20.48■□□□□ 0.87
SHOX2-202ENST00000425436 DOT1LQ8TEK3 1739 aa20.48■□□□□ 0.87
SHOX2-202ENST00000425436 GNAT3A8MTJ3 354 aa20.48■□□□□ 0.87
SHOX2-202ENST00000425436 RRP7AQ9Y3A4 280 aaKnown RBP20.48■□□□□ 0.87
SHOX2-202ENST00000425436 HSP90AB1P08238 724 aaKnown RBP20.47■□□□□ 0.87
SHOX2-202ENST00000425436 NEUROD2Q15784 382 aa20.47■□□□□ 0.87
SHOX2-202ENST00000425436 DCAF5Q96JK2 942 aa20.47■□□□□ 0.87
SHOX2-202ENST00000425436 TOGARAM1Q9Y4F4 1720 aa20.46■□□□□ 0.87
SHOX2-202ENST00000425436 KDM6AO15550 1401 aaPredicted RBP20.46■□□□□ 0.87
SHOX2-202ENST00000425436 NFE2L2Q16236 605 aa20.46■□□□□ 0.87
SHOX2-202ENST00000425436 BCL11BQ9C0K0 894 aaPredicted RBP20.46■□□□□ 0.87
SHOX2-202ENST00000425436 DLG5Q8TDM6 1919 aa20.46■□□□□ 0.87
SHOX2-202ENST00000425436 MAP3K5Q99683 1374 aa20.45■□□□□ 0.86
SHOX2-202ENST00000425436 NGEFQ8N5V2 710 aa20.45■□□□□ 0.86
SHOX2-202ENST00000425436 VIRMAQ69YN4 1812 aaKnown RBP20.45■□□□□ 0.86
SHOX2-202ENST00000425436 ITGB4P16144 1822 aa20.44■□□□□ 0.86
SHOX2-202ENST00000425436 RNMTO43148 476 aaKnown RBP20.44■□□□□ 0.86
SHOX2-202ENST00000425436 TMPOP42166 694 aaKnown RBP20.44■□□□□ 0.86
SHOX2-202ENST00000425436 DCTN1Q14203 1278 aa20.44■□□□□ 0.86
SHOX2-202ENST00000425436 IL17REQ8NFR9 667 aa20.44■□□□□ 0.86
SHOX2-202ENST00000425436 APAF1O14727 1248 aa20.43■□□□□ 0.86
SHOX2-202ENST00000425436 APBA3O96018 575 aa20.43■□□□□ 0.86
SHOX2-202ENST00000425436 RIPK4P57078 832 aa20.43■□□□□ 0.86
SHOX2-202ENST00000425436 MCM10Q7L590 875 aa20.43■□□□□ 0.86
SHOX2-202ENST00000425436 SCN11AQ9UI33 1791 aa20.43■□□□□ 0.86
SHOX2-202ENST00000425436 NHSQ6T4R5 1651 aa20.43■□□□□ 0.86
SHOX2-202ENST00000425436 SF3B2Q13435 895 aaKnown RBP20.43■□□□□ 0.86
SHOX2-202ENST00000425436 ERVV-2B6SEH9 535 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms