RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 MRVI1Q9Y6F6 885 aa8.18□□□□□ -1.1
TM9SF4-202ENST00000398022 PEX14O75381 377 aa8.18□□□□□ -1.1
TM9SF4-202ENST00000398022 SETBP1Q9Y6X0 1596 aa8.18□□□□□ -1.1
TM9SF4-202ENST00000398022 GET4Q7L5D6 327 aaPredicted RBP8.18□□□□□ -1.1
TM9SF4-202ENST00000398022 ZHX1Q9UKY1 873 aaPredicted RBP8.18□□□□□ -1.1
TM9SF4-202ENST00000398022 SENP3-EIF4A1A0A087X0R7 540 aa8.17□□□□□ -1.1
TM9SF4-202ENST00000398022 CSPP1Q1MSJ5 1256 aa8.17□□□□□ -1.1
TM9SF4-202ENST00000398022 DNAJC14Q6Y2X3 702 aaPredicted RBP8.17□□□□□ -1.1
TM9SF4-202ENST00000398022 UBA5Q9GZZ9 404 aa8.17□□□□□ -1.1
TM9SF4-202ENST00000398022 FAM135BQ49AJ0 1406 aa8.17□□□□□ -1.1
TM9SF4-202ENST00000398022 EXOC6Q8TAG9 804 aa8.17□□□□□ -1.1
TM9SF4-202ENST00000398022 CCDC144AA2RUR9 1427 aa8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 PPFIA4O75335 1185 aa8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 PNMA2Q9UL42 364 aa8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 CREBRFQ8IUR6 639 aa8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 RBM28Q9NW13 759 aaKnown RBP8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 PRAG1Q86YV5 1406 aa8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 ZRANB2O95218 330 aaKnown RBP eCLIP8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 MCCD1P59942 119 aaPredicted RBP8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 ZFYVE27Q5T4F4 411 aa8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 SLC24A3Q9HC58 644 aa8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 FRMD4BQ9Y2L6 1034 aa8.16□□□□□ -1.1
TM9SF4-202ENST00000398022 EPB41L2O43491 1005 aaKnown RBP8.15□□□□□ -1.1
TM9SF4-202ENST00000398022 PDE4AP27815 886 aa8.15□□□□□ -1.1
TM9SF4-202ENST00000398022 LTKP29376 864 aa8.15□□□□□ -1.1
TM9SF4-202ENST00000398022 RHBDL3P58872 404 aa8.15□□□□□ -1.1
TM9SF4-202ENST00000398022 LMOD3Q0VAK6 560 aa8.15□□□□□ -1.1
TM9SF4-202ENST00000398022 MKRN3Q13064 507 aaKnown RBP8.15□□□□□ -1.1
TM9SF4-202ENST00000398022 MORC4Q8TE76 937 aa8.15□□□□□ -1.1
TM9SF4-202ENST00000398022 KIF4AO95239 1232 aa8.15□□□□□ -1.11
TM9SF4-202ENST00000398022 DMTNQ08495 405 aa8.15□□□□□ -1.11
TM9SF4-202ENST00000398022 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.15□□□□□ -1.113e-6■■□□□ 14
TM9SF4-202ENST00000398022 RGL2O15211 777 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 TPM2P07951 284 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 TMF1P82094 1093 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 IRF5Q13568 498 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 ATL2Q8NHH9 583 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 SIRT1Q96EB6 747 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 STK24Q9Y6E0 443 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 PARD3Q8TEW0 1356 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 ADAMTS13Q76LX8 1427 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 ABCA3Q99758 1704 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 LIG1P18858 919 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 ZRSR2Q15696 482 aaKnown RBP8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 ZKSCAN2Q63HK3 967 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 INSRP06213 1382 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 CRYBG1Q9Y4K1 1723 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 WDR70Q9NW82 654 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 PPLO60437 1756 aa8.14□□□□□ -1.11
TM9SF4-202ENST00000398022 TMEM2Q9UHN6 1383 aa8.13□□□□□ -1.11
TM9SF4-202ENST00000398022 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.13□□□□□ -1.11
TM9SF4-202ENST00000398022 RNF217Q8TC41 542 aa8.13□□□□□ -1.11
TM9SF4-202ENST00000398022 CCDC97Q96F63 343 aaPredicted RBP8.13□□□□□ -1.11
TM9SF4-202ENST00000398022 BACH2Q9BYV9 841 aa8.13□□□□□ -1.11
TM9SF4-202ENST00000398022 PNNQ9H307 717 aaKnown RBP8.13□□□□□ -1.11
TM9SF4-202ENST00000398022 MAGEC2Q9UBF1 373 aaPredicted RBP8.13□□□□□ -1.11
TM9SF4-202ENST00000398022 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 SH3BP5O60239 455 aa8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 MAP4K4O95819 1239 aaPredicted RBP8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 FOSBP53539 338 aa8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 GOLGA6L3A6NEY3 463 aa8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 NEXMIFQ5QGS0 1516 aa8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 WDR43Q15061 677 aaKnown RBP eCLIP8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 RETREG2Q8NC44 543 aa8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 AMOTL2Q9Y2J4 779 aa8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 CLTCL1P53675 1640 aa8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 PTPRUQ92729 1446 aa8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 HELBQ8NG08 1087 aaPredicted RBP8.12□□□□□ -1.11
TM9SF4-202ENST00000398022 UNCXA6NJT0 531 aa8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 EXOC5O00471 708 aa8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.11□□□□□ -1.112e-7■□□□□ 9
TM9SF4-202ENST00000398022 IFNLR1Q8IU57 520 aaPredicted RBP8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 CACTIN-AS1Q8N1I8 211 aa8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 ZCRB1Q8TBF4 217 aaKnown RBP8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 ERBB3P21860 1342 aa8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 KNDC1Q76NI1 1749 aa8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 RAB11FIP3O75154 756 aa8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 PAX3P23760 479 aa8.11□□□□□ -1.11
TM9SF4-202ENST00000398022 TRPM2O94759 1503 aa8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 PANK3Q9H999 370 aa8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 KNSTRNQ9Y448 316 aa8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 LETM1O95202 739 aaPredicted RBP8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 BARGINQ6ZT62 677 aa8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 PAIP2Q9BPZ3 127 aaKnown RBP8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 IGSF5Q9NSI5 407 aa8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 STK26Q9P289 416 aa8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 GPRASP1Q5JY77 1395 aa8.1□□□□□ -1.11
TM9SF4-202ENST00000398022 NCOA3Q9Y6Q9 1424 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 UBAP1LF5GYI3 381 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 IPO8O15397 1037 aaKnown RBP8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 PRR29P0C7W0 189 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 GGT6Q6P531 493 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 CEP126Q9P2H0 1117 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 RPGRIP1LQ68CZ1 1315 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 PER1O15534 1290 aaPredicted RBP8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 CREB3O43889 395 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 PROCA1Q8NCQ7 364 aaPredicted RBP8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 CDCA7LQ96GN5 454 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 CRBNQ96SW2 442 aa8.09□□□□□ -1.11
TM9SF4-202ENST00000398022 CLEC4GQ6UXB4 293 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms