RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 DNAAF4Q8WXU2 420 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 K7ELQ4 463 aaPredicted RBP13.56□□□□□ -0.24
VPS13A-205ENST00000376636 NOL3O60936 208 aaKnown RBP13.56□□□□□ -0.24
VPS13A-205ENST00000376636 PAFAH1B1P43034 410 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 PPP4R3AQ6IN85 833 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 IVLP07476 585 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 HMGB2P26583 209 aaKnown RBP13.56□□□□□ -0.24
VPS13A-205ENST00000376636 CEP112Q8N8E3 955 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 KIF3CO14782 793 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 SMARCC1Q92922 1105 aaPredicted RBP13.56□□□□□ -0.24
VPS13A-205ENST00000376636 APAF1O14727 1248 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 ST20-MTHFSA0A0A6YYL1 179 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 GOLGA6L9A6NEM1 432 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 TNIP1Q15025 636 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 TSG101Q99816 390 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 CTNNA2P26232 953 aa13.55□□□□□ -0.24
VPS13A-205ENST00000376636 PPM1FP49593 454 aaPredicted RBP13.55□□□□□ -0.24
VPS13A-205ENST00000376636 SRCIN1Q9C0H9 1055 aa13.55□□□□□ -0.24
VPS13A-205ENST00000376636 NSRP1Q9H0G5 558 aaKnown RBP13.55□□□□□ -0.24
VPS13A-205ENST00000376636 RAB3IL1Q8TBN0 382 aa13.55□□□□□ -0.24
VPS13A-205ENST00000376636 MPHOSPH10O00566 681 aaKnown RBP13.55□□□□□ -0.24
VPS13A-205ENST00000376636 CLGNO14967 610 aa13.55□□□□□ -0.24
VPS13A-205ENST00000376636 ATP2B2Q01814 1243 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 CACNA2D4Q7Z3S7 1137 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 CIZ1Q9ULV3 898 aaPredicted RBP13.54□□□□□ -0.24
VPS13A-205ENST00000376636 NUTM2FA1L443 756 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 SSX2IPQ9Y2D8 614 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 PSME1Q06323 249 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 RAPGEF4Q8WZA2 1011 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 PPP6R1Q9UPN7 881 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 NEMFO60524 1076 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 KRT32Q14532 448 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 FBF1Q8TES7 1133 aa13.54□□□□□ -0.24
VPS13A-205ENST00000376636 PUS7Q96PZ0 661 aaKnown RBP13.54□□□□□ -0.24
VPS13A-205ENST00000376636 GTF2A1P52655 376 aaPredicted RBP13.54□□□□□ -0.24
VPS13A-205ENST00000376636 KDM4AO75164 1064 aa13.53□□□□□ -0.24
VPS13A-205ENST00000376636 EHBP1Q8NDI1 1231 aa13.53□□□□□ -0.24
VPS13A-205ENST00000376636 HMGB1P1B2RPK0 211 aaPredicted RBP13.53□□□□□ -0.24
VPS13A-205ENST00000376636 ZNF76P36508 570 aa13.53□□□□□ -0.24
VPS13A-205ENST00000376636 PPP1R14CQ8TAE6 165 aa13.53□□□□□ -0.24
VPS13A-205ENST00000376636 CTNNBL1Q8WYA6 563 aaPredicted RBP13.53□□□□□ -0.24
VPS13A-205ENST00000376636 CCDC160A6NGH7 325 aa13.52□□□□□ -0.24
VPS13A-205ENST00000376636 GNAI2P04899 355 aa13.52□□□□□ -0.24
VPS13A-205ENST00000376636 PLEKHH1Q9ULM0 1364 aa13.52□□□□□ -0.24
VPS13A-205ENST00000376636 ZNF287Q9HBT7 754 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 RAI14Q9P0K7 980 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 MSL1Q68DK7 614 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 ZSCAN31Q96LW9 406 aaPredicted RBP13.52□□□□□ -0.25
VPS13A-205ENST00000376636 CCDC6Q16204 474 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 LRRC45Q96CN5 670 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 KIF20AO95235 890 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 SETSIPP0DME0 302 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 KIF4BQ2VIQ3 1234 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 SWAP70Q9UH65 585 aa13.52□□□□□ -0.25
VPS13A-205ENST00000376636 SSBP05455 408 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 CETN1Q12798 172 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 STMN4Q9H169 189 aaPredicted RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 CTNNA3Q9UI47 895 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 RBM25P49756 843 aaKnown RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 CBX1P83916 185 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 CEP83Q9Y592 693 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 GSDMDP57764 484 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 AIMP1Q12904 312 aaKnown RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 HLTFQ14527 1009 aaKnown RBP eCLIP13.51□□□□□ -0.251e-6■■□□□ 13.4
VPS13A-205ENST00000376636 RAB34Q9BZG1 259 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 CCDC7Q96M83 1385 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 SURF6O75683 361 aaKnown RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 UBAC1Q9BSL1 405 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 SEC63Q9UGP8 760 aaKnown RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 TMCO5BA8MYB1 307 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 PHAXQ9H814 394 aaKnown RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 NUP88Q99567 741 aaPredicted RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 PLVAPQ9BX97 442 aa13.51□□□□□ -0.25
VPS13A-205ENST00000376636 GTPBP4Q9BZE4 634 aaKnown RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 CPSF2Q9P2I0 782 aaKnown RBP13.51□□□□□ -0.25
VPS13A-205ENST00000376636 CNNM1Q9NRU3 951 aa13.5□□□□□ -0.25
VPS13A-205ENST00000376636 MACROD2A1Z1Q3 448 aa13.5□□□□□ -0.25
VPS13A-205ENST00000376636 ANAPC4Q9UJX5 808 aa13.5□□□□□ -0.25
VPS13A-205ENST00000376636 TOP1P11387 765 aaKnown RBP13.5□□□□□ -0.25
VPS13A-205ENST00000376636 IBSPP21815 317 aaPredicted RBP13.5□□□□□ -0.25
VPS13A-205ENST00000376636 ANO10Q9NW15 660 aa13.5□□□□□ -0.25
VPS13A-205ENST00000376636 MKRN1Q9UHC7 482 aaKnown RBP13.5□□□□□ -0.25
VPS13A-205ENST00000376636 PANK1Q8TE04 598 aa13.5□□□□□ -0.25
VPS13A-205ENST00000376636 NUTM2DQ5VT03 806 aaPredicted RBP13.49□□□□□ -0.25
VPS13A-205ENST00000376636 IQCGQ9H095 443 aaKnown RBP13.49□□□□□ -0.25
VPS13A-205ENST00000376636 SCAPERQ9BY12 1400 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 A0A1W2PRG0 241 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 YEATS4O95619 227 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 IFI16Q16666 785 aaKnown RBP13.49□□□□□ -0.25
VPS13A-205ENST00000376636 NUP133Q8WUM0 1156 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 HSF2BPO75031 334 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 STK3Q13188 491 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 TTC14Q96N46 770 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 CTAGE5O15320 804 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 CKAP4Q07065 602 aaKnown RBP13.49□□□□□ -0.25
VPS13A-205ENST00000376636 PIBF1Q8WXW3 757 aa13.49□□□□□ -0.25
VPS13A-205ENST00000376636 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.49□□□□□ -0.25
VPS13A-205ENST00000376636 ACTN2P35609 894 aa13.48□□□□□ -0.25
VPS13A-205ENST00000376636 BLOC1S2Q6QNY1 142 aa13.48□□□□□ -0.25
VPS13A-205ENST00000376636 CCDC155Q8N6L0 562 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms