RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 TSPYL4Q9UJ04 414 aa11.96□□□□□ -0.49
PTCH1-204ENST00000375290 ARHGAP45Q92619 1136 aa11.96□□□□□ -0.49
PTCH1-204ENST00000375290 CSB-PGBD3P0DP91 1061 aa11.96□□□□□ -0.49
PTCH1-204ENST00000375290 NAP1L1P55209 391 aaKnown RBP11.96□□□□□ -0.49
PTCH1-204ENST00000375290 SMAP1Q8IYB5 467 aaPredicted RBP11.96□□□□□ -0.49
PTCH1-204ENST00000375290 FIBPO43427 364 aa11.96□□□□□ -0.5
PTCH1-204ENST00000375290 UBE2HP62256 183 aa11.96□□□□□ -0.5
PTCH1-204ENST00000375290 EPRSP07814 1512 aaKnown RBP11.96□□□□□ -0.5
PTCH1-204ENST00000375290 HDAC1Q13547 482 aaPredicted RBP11.95□□□□□ -0.5
PTCH1-204ENST00000375290 NCBP3Q53F19 620 aaKnown RBP11.95□□□□□ -0.5
PTCH1-204ENST00000375290 NOL7Q9UMY1 257 aaKnown RBP11.95□□□□□ -0.5
PTCH1-204ENST00000375290 PTPRCP08575 1304 aa11.95□□□□□ -0.5
PTCH1-204ENST00000375290 EZRP15311 586 aaKnown RBP11.95□□□□□ -0.5
PTCH1-204ENST00000375290 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTCH1-204ENST00000375290 FSD1Q9BTV5 496 aa11.95□□□□□ -0.5
PTCH1-204ENST00000375290 GBP2P32456 591 aaPredicted RBP11.95□□□□□ -0.5
PTCH1-204ENST00000375290 PDILTQ8N807 584 aa11.95□□□□□ -0.5
PTCH1-204ENST00000375290 TAOK2Q9UL54 1235 aa11.95□□□□□ -0.5
PTCH1-204ENST00000375290 NAA15Q9BXJ9 866 aaKnown RBP11.95□□□□□ -0.5
PTCH1-204ENST00000375290 ABCA10Q8WWZ4 1543 aa11.95□□□□□ -0.5
PTCH1-204ENST00000375290 CCAR1Q8IX12 1150 aaKnown RBP11.94□□□□□ -0.5
PTCH1-204ENST00000375290 TCEAL9Q9UHQ7 104 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 KANK3Q6NY19 840 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 BLOC1S2Q6QNY1 142 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 EPB41L2O43491 1005 aaKnown RBP11.94□□□□□ -0.5
PTCH1-204ENST00000375290 MTHFSP49914 203 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 SLC52A1Q9NWF4 448 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 ZSCAN16Q9H4T2 348 aaPredicted RBP11.94□□□□□ -0.5
PTCH1-204ENST00000375290 ME1P48163 572 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 DYDC1Q8WWB3 177 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 CCDC94Q9BW85 323 aaPredicted RBP11.94□□□□□ -0.5
PTCH1-204ENST00000375290 LRSAM1Q6UWE0 723 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 NACAP1Q9BZK3 213 aa11.94□□□□□ -0.5
PTCH1-204ENST00000375290 CCDC196A0A1B0GTZ2 297 aa11.93□□□□□ -0.5
PTCH1-204ENST00000375290 TUBB2AQ13885 445 aa11.93□□□□□ -0.5
PTCH1-204ENST00000375290 TUBB2BQ9BVA1 445 aa11.93□□□□□ -0.5
PTCH1-204ENST00000375290 GLRX3O76003 335 aaKnown RBP11.93□□□□□ -0.5
PTCH1-204ENST00000375290 FGFR1OPO95684 399 aaKnown RBP11.93□□□□□ -0.5
PTCH1-204ENST00000375290 ZKSCAN5Q9Y2L8 839 aa11.93□□□□□ -0.5
PTCH1-204ENST00000375290 USP25Q9UHP3 1055 aa11.93□□□□□ -0.5
PTCH1-204ENST00000375290 CCDC27Q2M243 656 aa11.92□□□□□ -0.5
PTCH1-204ENST00000375290 HMG20BQ9P0W2 317 aa11.92□□□□□ -0.5
PTCH1-204ENST00000375290 IFT140Q96RY7 1462 aa11.92□□□□□ -0.5
PTCH1-204ENST00000375290 CCDC57Q2TAC2 916 aa11.92□□□□□ -0.5
PTCH1-204ENST00000375290 FMNL2Q96PY5 1086 aa11.92□□□□□ -0.5
PTCH1-204ENST00000375290 GOLIM4O00461 696 aa11.92□□□□□ -0.5
PTCH1-204ENST00000375290 SYCP1Q15431 976 aa11.92□□□□□ -0.5
PTCH1-204ENST00000375290 ATL3Q6DD88 541 aa11.92□□□□□ -0.5
PTCH1-204ENST00000375290 SYCE3A1L190 88 aa11.91□□□□□ -0.5
PTCH1-204ENST00000375290 STX1AQ16623 288 aa11.91□□□□□ -0.5
PTCH1-204ENST00000375290 GIGYF2Q6Y7W6 1299 aaKnown RBP11.91□□□□□ -0.5
PTCH1-204ENST00000375290 NOB1Q9ULX3 412 aaKnown RBP11.91□□□□□ -0.5
PTCH1-204ENST00000375290 ZMYM4Q5VZL5 1548 aa11.91□□□□□ -0.5
PTCH1-204ENST00000375290 VPS36Q86VN1 386 aa11.91□□□□□ -0.5
PTCH1-204ENST00000375290 SCAF11Q99590 1463 aaKnown RBP11.91□□□□□ -0.5
PTCH1-204ENST00000375290 GCOM1H8Y6P7 765 aaPredicted RBP11.91□□□□□ -0.5
PTCH1-204ENST00000375290 MYZAPP0CAP1 466 aa11.91□□□□□ -0.5
PTCH1-204ENST00000375290 PDRG1Q9NUG6 133 aa11.91□□□□□ -0.5
PTCH1-204ENST00000375290 HSP90AB2PQ58FF8 381 aa11.9□□□□□ -0.5
PTCH1-204ENST00000375290 CTAGE1Q96RT6 745 aa11.9□□□□□ -0.5
PTCH1-204ENST00000375290 NESP48681 1621 aa11.9□□□□□ -0.5
PTCH1-204ENST00000375290 NF2P35240 595 aa11.9□□□□□ -0.5
PTCH1-204ENST00000375290 SH3BGRP55822 239 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-204ENST00000375290 TNPO1Q92973 898 aaKnown RBP11.9□□□□□ -0.5
PTCH1-204ENST00000375290 CCDC102AQ96A19 550 aa11.9□□□□□ -0.5
PTCH1-204ENST00000375290 INTS4Q96HW7 963 aaKnown RBP11.9□□□□□ -0.5
PTCH1-204ENST00000375290 UHRF1BP1Q6BDS2 1440 aa11.9□□□□□ -0.5
PTCH1-204ENST00000375290 TULP1O00294 542 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-204ENST00000375290 U3KPZ7 1027 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-204ENST00000375290 SURF6O75683 361 aaKnown RBP11.9□□□□□ -0.5
PTCH1-204ENST00000375290 CCDC43Q96MW1 224 aaKnown RBP11.9□□□□□ -0.5
PTCH1-204ENST00000375290 MSH5O43196 834 aa11.9□□□□□ -0.5
PTCH1-204ENST00000375290 GABPB1Q06547 395 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-204ENST00000375290 SPECC1LQ69YQ0 1117 aa11.9□□□□□ -0.5
PTCH1-204ENST00000375290 SOS1Q07889 1333 aaPredicted RBP11.9□□□□□ -0.51
PTCH1-204ENST00000375290 CTTNBP2Q8WZ74 1663 aa11.9□□□□□ -0.51
PTCH1-204ENST00000375290 CLIP2Q9UDT6 1046 aa11.9□□□□□ -0.51
PTCH1-204ENST00000375290 CASQ1P31415 396 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 CCDC158Q5M9N0 1113 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 FOXD4L6Q3SYB3 417 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-204ENST00000375290 FOXD4L3Q6VB84 417 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-204ENST00000375290 TBC1D2Q9BYX2 928 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 TAOK3Q9H2K8 898 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 ASXL1Q8IXJ9 1541 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 RBM10P98175 930 aaKnown RBP11.89□□□□□ -0.51
PTCH1-204ENST00000375290 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-204ENST00000375290 LIMCH1Q9UPQ0 1083 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 DESP17661 470 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 CKAP4Q07065 602 aaKnown RBP11.89□□□□□ -0.51
PTCH1-204ENST00000375290 RBM33Q96EV2 1170 aaKnown RBP11.89□□□□□ -0.51
PTCH1-204ENST00000375290 EXOSC9Q06265 439 aaKnown RBP11.89□□□□□ -0.51
PTCH1-204ENST00000375290 KIF1BPQ96EK5 621 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 FMNL3Q8IVF7 1028 aa11.89□□□□□ -0.51
PTCH1-204ENST00000375290 PUS7Q96PZ0 661 aaKnown RBP11.89□□□□□ -0.51
PTCH1-204ENST00000375290 CDCA7LQ96GN5 454 aa11.88□□□□□ -0.51
PTCH1-204ENST00000375290 PPP1R12BO60237 982 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-204ENST00000375290 USO1O60763 962 aaKnown RBP11.88□□□□□ -0.51
PTCH1-204ENST00000375290 BMP15O95972 392 aa11.88□□□□□ -0.51
PTCH1-204ENST00000375290 CDK5RAP3Q96JB5 506 aa11.88□□□□□ -0.51
PTCH1-204ENST00000375290 BMP2KQ9NSY1 1161 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms