RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 KIF18AQ8NI77 898 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 NUP62CLQ9H1M0 184 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 LARP1BQ659C4 914 aaKnown RBP8.54□□□□□ -1.04
SYNE1-208ENST00000367256 FILIP1Q7Z7B0 1213 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 SOGA3Q5TF21 947 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 NUTM2GQ5VZR2 741 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 TICAM2Q86XR7 235 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 CASQ1P31415 396 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 SPA17Q15506 151 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 CCDC113Q9H0I3 377 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 ATF3P18847 181 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 MAP3K11Q16584 847 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 TIAM1Q13009 1591 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 GPRASP1Q5JY77 1395 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 SSBP05455 408 aaKnown RBP eCLIP8.54□□□□□ -1.04
SYNE1-208ENST00000367256 MICALCLQ6ZW33 695 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 GAS2L2Q8NHY3 880 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 GOPCQ9HD26 462 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 BMP2KQ9NSY1 1161 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-208ENST00000367256 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.54□□□□□ -1.04
SYNE1-208ENST00000367256 LUZP1Q86V48 1076 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 SPATA24Q86W54 205 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 WASF1Q92558 559 aa8.54□□□□□ -1.04
SYNE1-208ENST00000367256 MAP4K4O95819 1239 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-208ENST00000367256 SFPQP23246 707 aaKnown RBP eCLIP8.53□□□□□ -1.04
SYNE1-208ENST00000367256 IFFO1Q0D2I5 559 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 MVPQ14764 893 aaKnown RBP8.53□□□□□ -1.04
SYNE1-208ENST00000367256 IMMTQ16891 758 aaKnown RBP8.53□□□□□ -1.04
SYNE1-208ENST00000367256 PRIMPOLQ96LW4 560 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 DNAI2Q9GZS0 605 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 NOB1Q9ULX3 412 aaKnown RBP8.53□□□□□ -1.04
SYNE1-208ENST00000367256 ADAMTS8Q9UP79 889 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 CCDC183Q5T5S1 534 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 SIL1Q9H173 461 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 PDRG1Q9NUG6 133 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 CTAGE5O15320 804 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 UBAC1Q9BSL1 405 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 ATAD2BQ9ULI0 1458 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 GOLGA6L9A6NEM1 432 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 VPS36Q86VN1 386 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 FEZ1Q99689 392 aa8.53□□□□□ -1.04
SYNE1-208ENST00000367256 GCOM1H8Y6P7 765 aaPredicted RBP8.52□□□□□ -1.04
SYNE1-208ENST00000367256 KIF5CO60282 957 aa8.52□□□□□ -1.04
SYNE1-208ENST00000367256 MYZAPP0CAP1 466 aa8.52□□□□□ -1.04
SYNE1-208ENST00000367256 SMC1AQ14683 1233 aaKnown RBP8.52□□□□□ -1.04
SYNE1-208ENST00000367256 CEP131Q9UPN4 1083 aa8.52□□□□□ -1.04
SYNE1-208ENST00000367256 SYCE3A1L190 88 aa8.52□□□□□ -1.04
SYNE1-208ENST00000367256 TCP11L2Q8N4U5 519 aa8.52□□□□□ -1.04
SYNE1-208ENST00000367256 CCDC83Q8IWF9 413 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 SCAND2PQ9GZW5 306 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-208ENST00000367256 POLR3GO15318 223 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-208ENST00000367256 CASTP20810 708 aaKnown RBP8.52□□□□□ -1.05
SYNE1-208ENST00000367256 CETN2P41208 172 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 KIAA1107Q9UPP5 1409 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 CCDC178Q5BJE1 867 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 PPM1EQ8WY54 764 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 CABP2Q9NPB3 220 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 GAPVD1Q14C86 1478 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 CAMK4Q16566 473 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 CFAP100Q494V2 611 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 AACSQ86V21 672 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 MPHOSPH10O00566 681 aaKnown RBP8.52□□□□□ -1.05
SYNE1-208ENST00000367256 PPP2R1AP30153 589 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 ZNF76P36508 570 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 PNISRQ8TF01 805 aaKnown RBP8.52□□□□□ -1.05
SYNE1-208ENST00000367256 RBM5P52756 815 aaKnown RBP eCLIP8.52□□□□□ -1.05
SYNE1-208ENST00000367256 GSDMDP57764 484 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 PTPN14Q15678 1187 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 ZSCAN25Q6NSZ9 544 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 SH2B1Q9NRF2 756 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-208ENST00000367256 SEC63Q9UGP8 760 aaKnown RBP8.52□□□□□ -1.05
SYNE1-208ENST00000367256 WDR97A6NE52 1622 aa8.52□□□□□ -1.05
SYNE1-208ENST00000367256 FAM177BA6PVY3 158 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 TDO2P48775 406 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 UBE4AQ14139 1066 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 FANCD2Q9BXW9 1451 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 PTPRGP23470 1445 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 ATF7IPQ6VMQ6 1270 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 CHD1LQ86WJ1 897 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 ABCC11Q96J66 1382 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 GSTTP1A0A1W2PQM5 241 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 IBSPP21815 317 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-208ENST00000367256 CTNNA3Q9UI47 895 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 DAPK1P53355 1430 aa8.51□□□□□ -1.05
SYNE1-208ENST00000367256 RNF187Q5TA31 235 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-208ENST00000367256 BRD2P25440 801 aaKnown RBP8.5□□□□□ -1.05
SYNE1-208ENST00000367256 ALS2CR12Q96Q35 445 aa8.5□□□□□ -1.05
SYNE1-208ENST00000367256 TUBB4AP04350 444 aa8.5□□□□□ -1.05
SYNE1-208ENST00000367256 PRDM10Q9NQV6 1147 aa8.5□□□□□ -1.05
SYNE1-208ENST00000367256 NKTRP30414 1462 aaKnown RBP8.5□□□□□ -1.05
SYNE1-208ENST00000367256 TWISTNBQ3B726 338 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-208ENST00000367256 JAKMIP1Q96N16 626 aaKnown RBP8.5□□□□□ -1.05
SYNE1-208ENST00000367256 TSG101Q99816 390 aa8.5□□□□□ -1.05
SYNE1-208ENST00000367256 FKBP15Q5T1M5 1219 aa8.5□□□□□ -1.05
SYNE1-208ENST00000367256 CCDC150Q8NCX0 1101 aa8.5□□□□□ -1.05
SYNE1-208ENST00000367256 TUBB4BP68371 445 aa8.5□□□□□ -1.05
SYNE1-208ENST00000367256 GIGYF2Q6Y7W6 1299 aaKnown RBP8.49□□□□□ -1.05
SYNE1-208ENST00000367256 HOOK3Q86VS8 718 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 CTNNBL1Q8WYA6 563 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-208ENST00000367256 MPHOSPH8Q99549 860 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms