RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 PLVAPQ9BX97 442 aa20.51■□□□□ 0.87
SMAD4-201ENST00000342988 ZNF287Q9HBT7 754 aa20.51■□□□□ 0.87
SMAD4-201ENST00000342988 FEZ2Q9UHY8 353 aaPredicted RBP20.51■□□□□ 0.87
SMAD4-201ENST00000342988 SMC6Q96SB8 1091 aa20.51■□□□□ 0.87
SMAD4-201ENST00000342988 TNIKQ9UKE5 1360 aa20.5■□□□□ 0.87
SMAD4-201ENST00000342988 RGS22Q8NE09 1264 aa20.5■□□□□ 0.87
SMAD4-201ENST00000342988 HMGB2P26583 209 aaKnown RBP20.5■□□□□ 0.87
SMAD4-201ENST00000342988 RRP7AQ9Y3A4 280 aaKnown RBP20.5■□□□□ 0.87
SMAD4-201ENST00000342988 CEBPZQ03701 1054 aaKnown RBP20.5■□□□□ 0.87
SMAD4-201ENST00000342988 CACNA2D4Q7Z3S7 1137 aa20.5■□□□□ 0.87
SMAD4-201ENST00000342988 STMN4Q9H169 189 aaPredicted RBP20.5■□□□□ 0.87
SMAD4-201ENST00000342988 CCDC158Q5M9N0 1113 aa20.5■□□□□ 0.87
SMAD4-201ENST00000342988 GMNNO75496 209 aa20.5■□□□□ 0.87
SMAD4-201ENST00000342988 ACTN2P35609 894 aa20.5■□□□□ 0.87
SMAD4-201ENST00000342988 A0A1W2PRG0 241 aa20.5■□□□□ 0.87
SMAD4-201ENST00000342988 MAP4K4O95819 1239 aaPredicted RBP20.49■□□□□ 0.87
SMAD4-201ENST00000342988 PSMD1Q99460 953 aa20.49■□□□□ 0.87
SMAD4-201ENST00000342988 CCDC174Q6PII3 467 aa20.49■□□□□ 0.87
SMAD4-201ENST00000342988 PRPF31Q8WWY3 499 aaKnown RBP20.49■□□□□ 0.87
SMAD4-201ENST00000342988 TPD52P55327 224 aaPredicted RBP20.49■□□□□ 0.87
SMAD4-201ENST00000342988 SMG6Q86US8 1419 aaKnown RBP20.49■□□□□ 0.87
SMAD4-201ENST00000342988 IQCGQ9H095 443 aaKnown RBP20.49■□□□□ 0.87
SMAD4-201ENST00000342988 PTPN14Q15678 1187 aa20.49■□□□□ 0.87
SMAD4-201ENST00000342988 TTC39AQ5SRH9 613 aa20.48■□□□□ 0.87
SMAD4-201ENST00000342988 CYP46A1Q9Y6A2 500 aa20.48■□□□□ 0.87
SMAD4-201ENST00000342988 DYNC1I1O14576 645 aa20.48■□□□□ 0.87
SMAD4-201ENST00000342988 PRPF40AO75400 957 aaKnown RBP20.48■□□□□ 0.87
SMAD4-201ENST00000342988 PSMC4P43686 418 aa20.48■□□□□ 0.87
SMAD4-201ENST00000342988 DNAJC2Q99543 621 aaKnown RBP20.48■□□□□ 0.87
SMAD4-201ENST00000342988 LMAN1P49257 510 aa20.48■□□□□ 0.87
SMAD4-201ENST00000342988 MAPK8IP2Q13387 824 aaPredicted RBP20.48■□□□□ 0.87
SMAD4-201ENST00000342988 PLIN1O60240 522 aa20.48■□□□□ 0.87
SMAD4-201ENST00000342988 CCDC14Q49A88 953 aa20.48■□□□□ 0.87
SMAD4-201ENST00000342988 TTC12Q9H892 705 aaPredicted RBP20.48■□□□□ 0.87
SMAD4-201ENST00000342988 COG6Q9Y2V7 657 aa20.48■□□□□ 0.87
SMAD4-201ENST00000342988 SEC63Q9UGP8 760 aaKnown RBP20.47■□□□□ 0.87
SMAD4-201ENST00000342988 GTF2A1P52655 376 aaPredicted RBP20.47■□□□□ 0.87
SMAD4-201ENST00000342988 MXRA7P84157 204 aa20.47■□□□□ 0.87
SMAD4-201ENST00000342988 CCDC155Q8N6L0 562 aa20.47■□□□□ 0.87
SMAD4-201ENST00000342988 SFPQP23246 707 aaKnown RBP eCLIP20.47■□□□□ 0.87
SMAD4-201ENST00000342988 RPUSD2Q8IZ73 545 aaKnown RBP20.47■□□□□ 0.87
SMAD4-201ENST00000342988 FMN1Q68DA7 1419 aa20.47■□□□□ 0.87
SMAD4-201ENST00000342988 RAB34Q9BZG1 259 aa20.47■□□□□ 0.87
SMAD4-201ENST00000342988 FAM184BQ9ULE4 1060 aa20.47■□□□□ 0.87
SMAD4-201ENST00000342988 CWC25Q9NXE8 425 aaPredicted RBP20.47■□□□□ 0.87
SMAD4-201ENST00000342988 KIF4AO95239 1232 aa20.47■□□□□ 0.87
SMAD4-201ENST00000342988 IVLP07476 585 aa20.47■□□□□ 0.87
SMAD4-201ENST00000342988 CNGA1P29973 690 aa20.47■□□□□ 0.87
SMAD4-201ENST00000342988 IFI16Q16666 785 aaKnown RBP20.47■□□□□ 0.87
SMAD4-201ENST00000342988 RBM25P49756 843 aaKnown RBP20.46■□□□□ 0.87
SMAD4-201ENST00000342988 OPA1O60313 960 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 MAP3K9P80192 1104 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 CCDC110Q8TBZ0 833 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 CFAP100Q494V2 611 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 SMC1BQ8NDV3 1235 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 CCDC18Q5T9S5 1454 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 TACC1O75410 805 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 PSME1Q06323 249 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 SSBP05455 408 aaKnown RBP eCLIP20.46■□□□□ 0.87
SMAD4-201ENST00000342988 WDR63Q8IWG1 891 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 MSL1Q68DK7 614 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 MIPOL1Q8TD10 442 aa20.46■□□□□ 0.87
SMAD4-201ENST00000342988 ELL2O00472 640 aaPredicted RBP20.45■□□□□ 0.86
SMAD4-201ENST00000342988 GNAI1P63096 354 aa20.45■□□□□ 0.86
SMAD4-201ENST00000342988 MACROD2A1Z1Q3 448 aa20.45■□□□□ 0.86
SMAD4-201ENST00000342988 TTC36A6NLP5 189 aa20.45■□□□□ 0.86
SMAD4-201ENST00000342988 SMARCC1Q92922 1105 aaPredicted RBP20.45■□□□□ 0.86
SMAD4-201ENST00000342988 CCDC144AA2RUR9 1427 aa20.45■□□□□ 0.86
SMAD4-201ENST00000342988 KIF20AO95235 890 aa20.44■□□□□ 0.86
SMAD4-201ENST00000342988 HLTFQ14527 1009 aaKnown RBP eCLIP20.44■□□□□ 0.86
SMAD4-201ENST00000342988 CKAP4Q07065 602 aaKnown RBP20.44■□□□□ 0.86
SMAD4-201ENST00000342988 TSPYL4Q9UJ04 414 aa20.44■□□□□ 0.86
SMAD4-201ENST00000342988 GOLGA6L9A6NEM1 432 aa20.44■□□□□ 0.86
SMAD4-201ENST00000342988 RAI14Q9P0K7 980 aa20.44■□□□□ 0.86
SMAD4-201ENST00000342988 TTC14Q96N46 770 aa20.44■□□□□ 0.86
SMAD4-201ENST00000342988 USH1CQ9Y6N9 552 aa20.44■□□□□ 0.86
SMAD4-201ENST00000342988 CEP120Q8N960 986 aa20.44■□□□□ 0.86
SMAD4-201ENST00000342988 TCHPQ9BT92 498 aa20.44■□□□□ 0.86
SMAD4-201ENST00000342988 SCLT1Q96NL6 688 aa20.43■□□□□ 0.86
SMAD4-201ENST00000342988 SERPINA10Q9UK55 444 aa20.43■□□□□ 0.86
SMAD4-201ENST00000342988 WRNQ14191 1432 aaPredicted RBP eCLIP20.43■□□□□ 0.86
SMAD4-201ENST00000342988 ARL1P40616 181 aaPredicted RBP20.43■□□□□ 0.86
SMAD4-201ENST00000342988 SATB1Q01826 763 aa20.43■□□□□ 0.86
SMAD4-201ENST00000342988 NECTIN2Q92692 538 aa20.43■□□□□ 0.86
SMAD4-201ENST00000342988 APBB1IPQ7Z5R6 666 aaPredicted RBP20.43■□□□□ 0.86
SMAD4-201ENST00000342988 EHBP1Q8NDI1 1231 aa20.43■□□□□ 0.86
SMAD4-201ENST00000342988 SPATA32Q96LK8 384 aa20.43■□□□□ 0.86
SMAD4-201ENST00000342988 PPFIA2O75334 1257 aa20.43■□□□□ 0.86
SMAD4-201ENST00000342988 NEK4P51957 841 aa20.43■□□□□ 0.86
SMAD4-201ENST00000342988 DNAJC21Q5F1R6 531 aaKnown RBP20.42■□□□□ 0.86
SMAD4-201ENST00000342988 STMN1P16949 149 aa20.42■□□□□ 0.86
SMAD4-201ENST00000342988 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.42■□□□□ 0.86
SMAD4-201ENST00000342988 TTC21AQ8NDW8 1320 aa20.42■□□□□ 0.86
SMAD4-201ENST00000342988 NUP62CLQ9H1M0 184 aa20.42■□□□□ 0.86
SMAD4-201ENST00000342988 PHAXQ9H814 394 aaKnown RBP20.42■□□□□ 0.86
SMAD4-201ENST00000342988 WASHC2CQ9Y4E1 1318 aa20.42■□□□□ 0.86
SMAD4-201ENST00000342988 HSF2BPO75031 334 aa20.42■□□□□ 0.86
SMAD4-201ENST00000342988 SNX16P57768 344 aa20.41■□□□□ 0.86
SMAD4-201ENST00000342988 SARNPP82979 210 aaKnown RBP20.41■□□□□ 0.86
SMAD4-201ENST00000342988 CCDC172P0C7W6 258 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms