RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 TRIM22Q8IYM9 498 aa11.48□□□□□ -0.57
COL4A6-201ENST00000334504 SMG6Q86US8 1419 aaKnown RBP11.48□□□□□ -0.57
COL4A6-201ENST00000334504 ZNF397Q8NF99 534 aaPredicted RBP11.48□□□□□ -0.57
COL4A6-201ENST00000334504 CCDC69A6NI79 296 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 UBE4AQ14139 1066 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 SPA17Q15506 151 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 CCDC175P0C221 793 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 ERC1Q8IUD2 1116 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 ZNF526Q8TF50 670 aaPredicted RBP11.47□□□□□ -0.57
COL4A6-201ENST00000334504 POTEB2H3BUK9 544 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 CCDC178Q5BJE1 867 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 PSME1Q06323 249 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 NUTM2GQ5VZR2 741 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 LUZP1Q86V48 1076 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 TOP1P11387 765 aaKnown RBP11.47□□□□□ -0.57
COL4A6-201ENST00000334504 IMMTQ16891 758 aaKnown RBP11.47□□□□□ -0.57
COL4A6-201ENST00000334504 TTC39AQ5SRH9 613 aa11.47□□□□□ -0.57
COL4A6-201ENST00000334504 NOL7Q9UMY1 257 aaKnown RBP11.47□□□□□ -0.57
COL4A6-201ENST00000334504 PPM1FP49593 454 aaPredicted RBP11.46□□□□□ -0.57
COL4A6-201ENST00000334504 BLOC1S2Q6QNY1 142 aa11.46□□□□□ -0.57
COL4A6-201ENST00000334504 KRT222Q8N1A0 295 aa11.46□□□□□ -0.57
COL4A6-201ENST00000334504 SSFA2P28290 1259 aa11.46□□□□□ -0.57
COL4A6-201ENST00000334504 CCDC30Q5VVM6 783 aa11.46□□□□□ -0.57
COL4A6-201ENST00000334504 MCM5P33992 734 aa11.46□□□□□ -0.57
COL4A6-201ENST00000334504 SRRTQ9BXP5 876 aaKnown RBP11.46□□□□□ -0.57
COL4A6-201ENST00000334504 ANO10Q9NW15 660 aa11.46□□□□□ -0.57
COL4A6-201ENST00000334504 TSR2Q969E8 191 aaKnown RBP11.46□□□□□ -0.58
COL4A6-201ENST00000334504 GCOM1H8Y6P7 765 aaPredicted RBP11.46□□□□□ -0.58
COL4A6-201ENST00000334504 ADCY5O95622 1261 aa11.46□□□□□ -0.58
COL4A6-201ENST00000334504 MYZAPP0CAP1 466 aa11.46□□□□□ -0.58
COL4A6-201ENST00000334504 CEP135Q66GS9 1140 aa11.46□□□□□ -0.58
COL4A6-201ENST00000334504 ZNF428Q96B54 188 aa11.46□□□□□ -0.58
COL4A6-201ENST00000334504 PRIMPOLQ96LW4 560 aa11.46□□□□□ -0.58
COL4A6-201ENST00000334504 ATP2C2O75185 946 aa11.46□□□□□ -0.58
COL4A6-201ENST00000334504 SSR1P43307 286 aaKnown RBP11.46□□□□□ -0.58
COL4A6-201ENST00000334504 TWISTNBQ3B726 338 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-201ENST00000334504 NUP133Q8WUM0 1156 aa11.45□□□□□ -0.58
COL4A6-201ENST00000334504 TNPO1Q92973 898 aaKnown RBP11.45□□□□□ -0.58
COL4A6-201ENST00000334504 GGNBP2Q9H3C7 697 aa11.45□□□□□ -0.58
COL4A6-201ENST00000334504 MVPQ14764 893 aaKnown RBP11.45□□□□□ -0.58
COL4A6-201ENST00000334504 SLC3A2P08195 630 aaKnown RBP11.45□□□□□ -0.58
COL4A6-201ENST00000334504 DNA2P51530 1060 aa11.45□□□□□ -0.58
COL4A6-201ENST00000334504 GIGYF2Q6Y7W6 1299 aaKnown RBP11.45□□□□□ -0.58
COL4A6-201ENST00000334504 JPH4Q96JJ6 628 aa11.45□□□□□ -0.58
COL4A6-201ENST00000334504 RSPH14Q9UHP6 348 aa11.45□□□□□ -0.58
COL4A6-201ENST00000334504 PPP2R1AP30153 589 aa11.45□□□□□ -0.58
COL4A6-201ENST00000334504 PRDM2Q13029 1718 aa11.45□□□□□ -0.58
COL4A6-201ENST00000334504 FERMT3Q86UX7 667 aa11.44□□□□□ -0.58
COL4A6-201ENST00000334504 SPATA24Q86W54 205 aa11.44□□□□□ -0.58
COL4A6-201ENST00000334504 SMARCA2P51531 1590 aa11.44□□□□□ -0.58
COL4A6-201ENST00000334504 STAMBPO95630 424 aa11.44□□□□□ -0.58
COL4A6-201ENST00000334504 SNW1Q13573 536 aaKnown RBP11.44□□□□□ -0.58
COL4A6-201ENST00000334504 VGFO15240 615 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-201ENST00000334504 CWC27Q6UX04 472 aaKnown RBP11.44□□□□□ -0.58
COL4A6-201ENST00000334504 PLCD3Q8N3E9 789 aa11.44□□□□□ -0.58
COL4A6-201ENST00000334504 GTPBP4Q9BZE4 634 aaKnown RBP11.44□□□□□ -0.58
COL4A6-201ENST00000334504 CASTP20810 708 aaKnown RBP11.44□□□□□ -0.58
COL4A6-201ENST00000334504 CCDC83Q8IWF9 413 aa11.44□□□□□ -0.58
COL4A6-201ENST00000334504 NEMFO60524 1076 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 CCDC57Q2TAC2 916 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 SSBP05455 408 aaKnown RBP eCLIP11.43□□□□□ -0.58
COL4A6-201ENST00000334504 MTHFSP49914 203 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 MYCNP04198 464 aaPredicted RBP11.43□□□□□ -0.58
COL4A6-201ENST00000334504 ATF3P18847 181 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 CLCN1P35523 988 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 MAATS1Q7Z4T9 603 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 WWC2Q6AWC2 1192 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 CDKL5O76039 1030 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 SPECC1LQ69YQ0 1117 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 TMC6Q7Z403 805 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 CKAP2LQ8IYA6 745 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 CPLX3Q8WVH0 158 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 PAXBP1Q9Y5B6 917 aa11.43□□□□□ -0.58
COL4A6-201ENST00000334504 LIG1P18858 919 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 CCDC158Q5M9N0 1113 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 IVLP07476 585 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 PAFAH1B1P43034 410 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 SPECC1Q5M775 1068 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 KLHL10Q6JEL2 608 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 MICALL1Q8N3F8 863 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 SKAP1Q86WV1 359 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 SIL1Q9H173 461 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 RBM27Q9P2N5 1060 aaKnown RBP11.42□□□□□ -0.58
COL4A6-201ENST00000334504 HSPA4P34932 840 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 GSTTP1A0A1W2PQM5 241 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.42□□□□□ -0.58
COL4A6-201ENST00000334504 STRN4Q9NRL3 753 aa11.42□□□□□ -0.58
COL4A6-201ENST00000334504 HLTFQ14527 1009 aaKnown RBP eCLIP11.41□□□□□ -0.58
COL4A6-201ENST00000334504 TTC31Q49AM3 519 aaPredicted RBP11.41□□□□□ -0.58
COL4A6-201ENST00000334504 NUP88Q99567 741 aaPredicted RBP11.41□□□□□ -0.58
COL4A6-201ENST00000334504 SRCIN1Q9C0H9 1055 aa11.41□□□□□ -0.58
COL4A6-201ENST00000334504 ZSWIM4Q9H7M6 989 aa11.41□□□□□ -0.58
COL4A6-201ENST00000334504 GSDMDP57764 484 aa11.41□□□□□ -0.58
COL4A6-201ENST00000334504 TBC1D2Q9BYX2 928 aa11.41□□□□□ -0.58
COL4A6-201ENST00000334504 ZNF830Q96NB3 372 aaPredicted RBP11.41□□□□□ -0.58
COL4A6-201ENST00000334504 BMP2KQ9NSY1 1161 aaPredicted RBP11.41□□□□□ -0.58
COL4A6-201ENST00000334504 SLC4A2P04920 1241 aa11.4□□□□□ -0.58
COL4A6-201ENST00000334504 CHMP4BP1P59074 171 aa11.4□□□□□ -0.58
COL4A6-201ENST00000334504 SOGA3Q5TF21 947 aa11.4□□□□□ -0.58
COL4A6-201ENST00000334504 ATF7IPQ6VMQ6 1270 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms