RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 GAS2L2Q8NHY3 880 aa23.76■■□□□ 1.39
USP39-201ENST00000323701 SMC4Q9NTJ3 1288 aa23.76■■□□□ 1.39
USP39-201ENST00000323701 MIS18AQ9NYP9 233 aa23.76■■□□□ 1.39
USP39-201ENST00000323701 VAMP4O75379 141 aa23.75■■□□□ 1.39
USP39-201ENST00000323701 KRT24Q2M2I5 525 aa23.75■■□□□ 1.39
USP39-201ENST00000323701 ERBB3P21860 1342 aa23.75■■□□□ 1.39
USP39-201ENST00000323701 CHL1O00533 1208 aa23.75■■□□□ 1.39
USP39-201ENST00000323701 PDE3AQ14432 1141 aa23.75■■□□□ 1.39
USP39-201ENST00000323701 COL18A1P39060 1754 aa23.74■■□□□ 1.39
USP39-201ENST00000323701 COG6Q9Y2V7 657 aa23.74■■□□□ 1.39
USP39-201ENST00000323701 CLUAP1Q96AJ1 413 aa23.74■■□□□ 1.39
USP39-201ENST00000323701 NCAPD2Q15021 1401 aa23.73■■□□□ 1.39
USP39-201ENST00000323701 KIAA0232Q92628 1395 aa23.73■■□□□ 1.39
USP39-201ENST00000323701 IL17REQ8NFR9 667 aa23.72■■□□□ 1.39
USP39-201ENST00000323701 RTF1Q92541 710 aaKnown RBP23.72■■□□□ 1.39
USP39-201ENST00000323701 GNAT3A8MTJ3 354 aa23.71■■□□□ 1.39
USP39-201ENST00000323701 TCERG1O14776 1098 aaKnown RBP23.71■■□□□ 1.39
USP39-201ENST00000323701 LTBP4Q8N2S1 1624 aa23.71■■□□□ 1.39
USP39-201ENST00000323701 TWISTNBQ3B726 338 aaPredicted RBP23.69■■□□□ 1.38
USP39-201ENST00000323701 NOB1Q9ULX3 412 aaKnown RBP23.69■■□□□ 1.38
USP39-201ENST00000323701 MAP3K5Q99683 1374 aa23.69■■□□□ 1.38
USP39-201ENST00000323701 CAMTA1Q9Y6Y1 1673 aa23.69■■□□□ 1.38
USP39-201ENST00000323701 NHSL1Q5SYE7 1610 aa23.69■■□□□ 1.38
USP39-201ENST00000323701 TRIM27P14373 513 aa23.68■■□□□ 1.38
USP39-201ENST00000323701 LRRC37A3O60309 1634 aa23.67■■□□□ 1.38
USP39-201ENST00000323701 ZKSCAN2Q63HK3 967 aa23.67■■□□□ 1.38
USP39-201ENST00000323701 LMO7Q8WWI1 1683 aa23.67■■□□□ 1.38
USP39-201ENST00000323701 CPDO75976 1380 aa23.67■■□□□ 1.38
USP39-201ENST00000323701 HTATSF1O43719 755 aaKnown RBP23.67■■□□□ 1.38
USP39-201ENST00000323701 ALDH1L2Q3SY69 923 aa23.67■■□□□ 1.38
USP39-201ENST00000323701 LGR6Q9HBX8 967 aa23.65■■□□□ 1.38
USP39-201ENST00000323701 NLRP2Q9NX02 1062 aa23.65■■□□□ 1.38
USP39-201ENST00000323701 MRPL50Q8N5N7 158 aaKnown RBP23.64■■□□□ 1.38
USP39-201ENST00000323701 TSPYL4Q9UJ04 414 aa23.64■■□□□ 1.37
USP39-201ENST00000323701 ATF7IPQ6VMQ6 1270 aa23.63■■□□□ 1.37
USP39-201ENST00000323701 ZNF530Q6P9A1 599 aaPredicted RBP23.62■■□□□ 1.37
USP39-201ENST00000323701 DZIP1LQ8IYY4 767 aaKnown RBP23.62■■□□□ 1.37
USP39-201ENST00000323701 ZNF428Q96B54 188 aa23.62■■□□□ 1.37
USP39-201ENST00000323701 FAM208AQ9UK61 1670 aaKnown RBP23.62■■□□□ 1.37
USP39-201ENST00000323701 SKAP1Q86WV1 359 aa23.62■■□□□ 1.37
USP39-201ENST00000323701 ABCA3Q99758 1704 aa23.62■■□□□ 1.37
USP39-201ENST00000323701 ROBO1Q9Y6N7 1651 aa23.61■■□□□ 1.37
USP39-201ENST00000323701 CEMIPQ8WUJ3 1361 aa23.61■■□□□ 1.37
USP39-201ENST00000323701 KDM2BQ8NHM5 1336 aa23.61■■□□□ 1.37
USP39-201ENST00000323701 BRPF1P55201 1214 aaPredicted RBP23.61■■□□□ 1.37
USP39-201ENST00000323701 PLEKHO1Q53GL0 409 aaPredicted RBP23.61■■□□□ 1.37
USP39-201ENST00000323701 PRDM11Q9NQV5 511 aa23.61■■□□□ 1.37
USP39-201ENST00000323701 CSB-PGBD3P0DP91 1061 aa23.6■■□□□ 1.37
USP39-201ENST00000323701 KIF16BQ96L93 1317 aa23.6■■□□□ 1.37
USP39-201ENST00000323701 MPRIPQ6WCQ1 1025 aa23.59■■□□□ 1.37
USP39-201ENST00000323701 FTSJ3Q8IY81 847 aaKnown RBP23.59■■□□□ 1.37
USP39-201ENST00000323701 MEGF6O75095 1541 aa23.58■■□□□ 1.37
USP39-201ENST00000323701 MVPQ14764 893 aaKnown RBP23.58■■□□□ 1.37
USP39-201ENST00000323701 ABCC6O95255 1503 aa23.58■■□□□ 1.37
USP39-201ENST00000323701 AMOTQ4VCS5 1084 aa23.58■■□□□ 1.36
USP39-201ENST00000323701 AKAP4Q5JQC9 854 aa23.58■■□□□ 1.36
USP39-201ENST00000323701 HAP1P54257 671 aaPredicted RBP23.57■■□□□ 1.36
USP39-201ENST00000323701 TMEM57Q8N5G2 664 aa23.57■■□□□ 1.36
USP39-201ENST00000323701 TAF7Q15545 349 aaPredicted RBP23.57■■□□□ 1.36
USP39-201ENST00000323701 IGHDP01880 384 aa23.55■■□□□ 1.36
USP39-201ENST00000323701 PCDHB15Q9Y5E8 787 aa23.55■■□□□ 1.36
USP39-201ENST00000323701 IPO8O15397 1037 aaKnown RBP23.54■■□□□ 1.36
USP39-201ENST00000323701 RAPGEF4Q8WZA2 1011 aa23.54■■□□□ 1.36
USP39-201ENST00000323701 ITPRIPQ8IWB1 547 aa23.53■■□□□ 1.36
USP39-201ENST00000323701 COL5A2P05997 1499 aaPredicted RBP23.53■■□□□ 1.36
USP39-201ENST00000323701 RNMTO43148 476 aaKnown RBP23.52■■□□□ 1.36
USP39-201ENST00000323701 C1orf141Q5JVX7 400 aa23.52■■□□□ 1.36
USP39-201ENST00000323701 KCNQ3O43525 872 aa23.52■■□□□ 1.36
USP39-201ENST00000323701 VIRMAQ69YN4 1812 aaKnown RBP23.51■■□□□ 1.35
USP39-201ENST00000323701 WDR17Q8IZU2 1322 aa23.51■■□□□ 1.35
USP39-201ENST00000323701 MS4A1P11836 297 aa23.5■■□□□ 1.35
USP39-201ENST00000323701 ARHGAP45Q92619 1136 aa23.5■■□□□ 1.35
USP39-201ENST00000323701 AHDC1Q5TGY3 1603 aaPredicted RBP23.5■■□□□ 1.35
USP39-201ENST00000323701 TATP17735 454 aaPredicted RBP23.5■■□□□ 1.35
USP39-201ENST00000323701 CENPQQ7L2Z9 268 aaPredicted RBP23.5■■□□□ 1.35
USP39-201ENST00000323701 TOM1L2Q6ZVM7 507 aa23.48■■□□□ 1.35
USP39-201ENST00000323701 NECTIN2Q92692 538 aa23.48■■□□□ 1.35
USP39-201ENST00000323701 STRN4Q9NRL3 753 aa23.48■■□□□ 1.35
USP39-201ENST00000323701 BABAM1Q9NWV8 329 aa23.48■■□□□ 1.35
USP39-201ENST00000323701 SLC4A2P04920 1241 aa23.47■■□□□ 1.35
USP39-201ENST00000323701 TEFQ10587 303 aa23.47■■□□□ 1.35
USP39-201ENST00000323701 LARP1Q6PKG0 1096 aaKnown RBP23.47■■□□□ 1.35
USP39-201ENST00000323701 G2E3Q7L622 706 aa23.47■■□□□ 1.35
USP39-201ENST00000323701 ABCC4O15439 1325 aa23.47■■□□□ 1.35
USP39-201ENST00000323701 RGS12O14924 1447 aa23.47■■□□□ 1.35
USP39-201ENST00000323701 CYP27B1O15528 508 aa23.47■■□□□ 1.35
USP39-201ENST00000323701 KDM6AO15550 1401 aaPredicted RBP23.46■■□□□ 1.35
USP39-201ENST00000323701 PHKG2P15735 406 aa23.46■■□□□ 1.35
USP39-201ENST00000323701 DDX19BQ9UMR2 479 aa23.46■■□□□ 1.35
USP39-201ENST00000323701 KDM3BQ7LBC6 1761 aa23.45■■□□□ 1.35
USP39-201ENST00000323701 ADAMTS7Q9UKP4 1686 aa23.45■■□□□ 1.35
USP39-201ENST00000323701 BTBD11A6QL63 1104 aa23.45■■□□□ 1.34
USP39-201ENST00000323701 EIF4A1P60842 406 aaKnown RBP23.45■■□□□ 1.34
USP39-201ENST00000323701 PIP4K2BP78356 416 aa23.45■■□□□ 1.34
USP39-201ENST00000323701 ZBTB40Q9NUA8 1239 aa23.45■■□□□ 1.34
USP39-201ENST00000323701 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.44■■□□□ 1.349e-7■□□□□ 10
USP39-201ENST00000323701 SPG7Q9UQ90 795 aa23.44■■□□□ 1.34
USP39-201ENST00000323701 AAMPQ13685 434 aa23.43■■□□□ 1.34
USP39-201ENST00000323701 OVOS2A0A0G2JMS6 1433 aa23.42■■□□□ 1.34
USP39-201ENST00000323701 PKD1L3Q7Z443 1732 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms