RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 LARP1Q6PKG0 1096 aaKnown RBP16.14■□□□□ 0.18
RFFL-201ENST00000315249 ATF7IPQ6VMQ6 1270 aa16.14■□□□□ 0.18
RFFL-201ENST00000315249 BIVM-ERCC5R4GMW8 1640 aa16.14■□□□□ 0.17
RFFL-201ENST00000315249 IPO7O95373 1038 aaKnown RBP16.14■□□□□ 0.17
RFFL-201ENST00000315249 STK3Q13188 491 aa16.14■□□□□ 0.17
RFFL-201ENST00000315249 ZBTB3Q9H5J0 574 aa16.14■□□□□ 0.17
RFFL-201ENST00000315249 UHRF1BP1LA0JNW5 1464 aa16.14■□□□□ 0.17
RFFL-201ENST00000315249 CCDC73Q6ZRK6 1079 aa16.14■□□□□ 0.17
RFFL-201ENST00000315249 USP5P45974 858 aa16.14■□□□□ 0.17
RFFL-201ENST00000315249 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.14■□□□□ 0.17
RFFL-201ENST00000315249 WDR7Q9Y4E6 1490 aa16.14■□□□□ 0.17
RFFL-201ENST00000315249 MYCNP04198 464 aaPredicted RBP16.13■□□□□ 0.17
RFFL-201ENST00000315249 CHMP4BP1P59074 171 aa16.13■□□□□ 0.17
RFFL-201ENST00000315249 CRACR2BQ8N4Y2 399 aaPredicted RBP16.13■□□□□ 0.17
RFFL-201ENST00000315249 CTTNBP2Q8WZ74 1663 aa16.13■□□□□ 0.17
RFFL-201ENST00000315249 FMNL2Q96PY5 1086 aa16.13■□□□□ 0.17
RFFL-201ENST00000315249 IFNL2Q8IZJ0 200 aa16.13■□□□□ 0.17
RFFL-201ENST00000315249 KRT18P05783 430 aaKnown RBP16.13■□□□□ 0.17
RFFL-201ENST00000315249 ATP10BO94823 1461 aa16.13■□□□□ 0.17
RFFL-201ENST00000315249 CT47A1Q5JQC4 288 aaPredicted RBP16.13■□□□□ 0.17
RFFL-201ENST00000315249 IFIT5Q13325 482 aaKnown RBP16.12■□□□□ 0.17
RFFL-201ENST00000315249 AAMPQ13685 434 aa16.12■□□□□ 0.17
RFFL-201ENST00000315249 FBLN1P23142 703 aa16.12■□□□□ 0.17
RFFL-201ENST00000315249 SASS6Q6UVJ0 657 aa16.12■□□□□ 0.17
RFFL-201ENST00000315249 DZIP1Q86YF9 867 aaKnown RBP16.12■□□□□ 0.17
RFFL-201ENST00000315249 A2MP01023 1474 aa16.12■□□□□ 0.17
RFFL-201ENST00000315249 WDR78Q5VTH9 848 aa16.12■□□□□ 0.17
RFFL-201ENST00000315249 GCC1Q96CN9 775 aa16.12■□□□□ 0.17
RFFL-201ENST00000315249 WDHD1O75717 1129 aaPredicted RBP16.11■□□□□ 0.17
RFFL-201ENST00000315249 POLR3DP05423 398 aaPredicted RBP16.11■□□□□ 0.17
RFFL-201ENST00000315249 NEK4P51957 841 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 IFIT1P09914 478 aaKnown RBP16.11■□□□□ 0.17
RFFL-201ENST00000315249 ODF2Q5BJF6 829 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 FBXO3Q9UK99 471 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 NCOA1Q15788 1441 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 WDR97A6NE52 1622 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 HSP90AB3PQ58FF7 597 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 PDZRN3Q9UPQ7 1066 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 ITSN2Q9NZM3 1697 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 ZFYVE27Q5T4F4 411 aa16.11■□□□□ 0.17
RFFL-201ENST00000315249 CEBPZQ03701 1054 aaKnown RBP16.11■□□□□ 0.17
RFFL-201ENST00000315249 SOGA3Q5TF21 947 aa16.1■□□□□ 0.17
RFFL-201ENST00000315249 ZHX3Q9H4I2 956 aa16.1■□□□□ 0.17
RFFL-201ENST00000315249 TSPOAP1O95153 1857 aa16.1■□□□□ 0.17
RFFL-201ENST00000315249 NAP1L1P55209 391 aaKnown RBP16.1■□□□□ 0.17
RFFL-201ENST00000315249 GRM1Q13255 1194 aa16.1■□□□□ 0.17
RFFL-201ENST00000315249 AIDAQ96BJ3 306 aa16.1■□□□□ 0.17
RFFL-201ENST00000315249 UBAC1Q9BSL1 405 aa16.1■□□□□ 0.17
RFFL-201ENST00000315249 CWC27Q6UX04 472 aaKnown RBP16.1■□□□□ 0.17
RFFL-201ENST00000315249 ZNF518AQ6AHZ1 1483 aa16.09■□□□□ 0.17
RFFL-201ENST00000315249 SYCP2Q9BX26 1530 aa16.09■□□□□ 0.17
RFFL-201ENST00000315249 MINDY4BA8MYZ0 360 aa16.09■□□□□ 0.17
RFFL-201ENST00000315249 ATP6V1AP38606 617 aa16.09■□□□□ 0.17
RFFL-201ENST00000315249 DDB1Q16531 1140 aa16.09■□□□□ 0.17
RFFL-201ENST00000315249 ZCRB1Q8TBF4 217 aaKnown RBP16.09■□□□□ 0.17
RFFL-201ENST00000315249 SDF4Q9BRK5 362 aa16.09■□□□□ 0.17
RFFL-201ENST00000315249 TXLNAP40222 546 aa16.08■□□□□ 0.17
RFFL-201ENST00000315249 TRIM22Q8IYM9 498 aa16.08■□□□□ 0.17
RFFL-201ENST00000315249 AKAP2Q9Y2D5 859 aa16.08■□□□□ 0.17
RFFL-201ENST00000315249 PLCH2O75038 1416 aa16.08■□□□□ 0.17
RFFL-201ENST00000315249 C14orf93Q9H972 538 aaKnown RBP16.08■□□□□ 0.16
RFFL-201ENST00000315249 PEG3Q9GZU2 1588 aa16.08■□□□□ 0.16
RFFL-201ENST00000315249 ST5P78524 1137 aa16.08■□□□□ 0.16
RFFL-201ENST00000315249 DDX46Q7L014 1031 aaKnown RBP16.08■□□□□ 0.16
RFFL-201ENST00000315249 EXOC6BQ9Y2D4 811 aa16.08■□□□□ 0.16
RFFL-201ENST00000315249 ZNF76P36508 570 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 NUTM1Q86Y26 1132 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 ATP5J2-PTCD1G3V325 749 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 F6X3S4 739 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 GOLGA6L1Q8N7Z2 621 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 MKNK2Q9HBH9 465 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 A0A087WZG4 1122 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 GPATCH8Q9UKJ3 1502 aaKnown RBP16.07■□□□□ 0.16
RFFL-201ENST00000315249 RIMS2Q9UQ26 1411 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 OFD1O75665 1012 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 PDE3AQ14432 1141 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 SKOR2Q2VWA4 1001 aaPredicted RBP16.07■□□□□ 0.16
RFFL-201ENST00000315249 PAF1Q8N7H5 531 aa16.07■□□□□ 0.16
RFFL-201ENST00000315249 OLFM4Q6UX06 510 aa16.06■□□□□ 0.16
RFFL-201ENST00000315249 HYPKQ9NX55 129 aa16.06■□□□□ 0.16
RFFL-201ENST00000315249 ANKRD18BA2A2Z9 1011 aa16.06■□□□□ 0.16
RFFL-201ENST00000315249 CT47B1P0C2W7 299 aaPredicted RBP16.06■□□□□ 0.16
RFFL-201ENST00000315249 NBPF6Q5VWK0 638 aa16.06■□□□□ 0.16
RFFL-201ENST00000315249 NBPF5PQ86XG9 351 aaPredicted RBP16.06■□□□□ 0.16
RFFL-201ENST00000315249 NBPF4Q96M43 638 aa16.06■□□□□ 0.16
RFFL-201ENST00000315249 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.06■□□□□ 0.169e-9■■■■■ 111.8
RFFL-201ENST00000315249 NUCB2P80303 420 aa16.06■□□□□ 0.16
RFFL-201ENST00000315249 MVPQ14764 893 aaKnown RBP16.06■□□□□ 0.16
RFFL-201ENST00000315249 CYP46A1Q9Y6A2 500 aa16.05■□□□□ 0.16
RFFL-201ENST00000315249 TEX13AQ9BXU3 409 aaPredicted RBP16.05■□□□□ 0.16
RFFL-201ENST00000315249 SLC5A1P13866 664 aa16.05■□□□□ 0.16
RFFL-201ENST00000315249 C19orf44Q9H6X5 657 aa16.05■□□□□ 0.16
RFFL-201ENST00000315249 TMEM57Q8N5G2 664 aa16.05■□□□□ 0.16
RFFL-201ENST00000315249 EIF4G3O43432 1585 aaKnown RBP16.05■□□□□ 0.16
RFFL-201ENST00000315249 TSHZ2Q9NRE2 1034 aa16.04■□□□□ 0.16
RFFL-201ENST00000315249 IFT57Q9NWB7 429 aa16.04■□□□□ 0.16
RFFL-201ENST00000315249 ZNF592Q92610 1267 aa16.04■□□□□ 0.16
RFFL-201ENST00000315249 JARID2Q92833 1246 aaPredicted RBP16.04■□□□□ 0.16
RFFL-201ENST00000315249 BOLA2Q9H3K6 86 aa16.04■□□□□ 0.16
RFFL-201ENST00000315249 TTC21BQ7Z4L5 1316 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms