RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 HLTFQ14527 1009 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 DCAF8Q5TAQ9 597 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 RBM28Q9NW13 759 aaKnown RBP13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 WASHC4Q2M389 1173 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 ARFGAP3Q9NP61 516 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 MAP4K4O95819 1239 aaPredicted RBP13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 CCDC171Q6TFL3 1326 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 MYCBPQ99417 103 aaPredicted RBP13.71□□□□□ -0.21
SHROOM3-201ENST00000296043 OTUD6BQ8N6M0 293 aa13.71□□□□□ -0.21
SHROOM3-201ENST00000296043 CYP46A1Q9Y6A2 500 aa13.71□□□□□ -0.21
SHROOM3-201ENST00000296043 FBF1Q8TES7 1133 aa13.71□□□□□ -0.21
SHROOM3-201ENST00000296043 IMMTQ16891 758 aaKnown RBP13.71□□□□□ -0.21
SHROOM3-201ENST00000296043 ATRIPQ8WXE1 791 aa13.71□□□□□ -0.21
SHROOM3-201ENST00000296043 FKBP5Q13451 457 aaPredicted RBP13.71□□□□□ -0.21
SHROOM3-201ENST00000296043 ZSCAN23Q3MJ62 389 aa13.71□□□□□ -0.21
SHROOM3-201ENST00000296043 STAMBPO95630 424 aa13.71□□□□□ -0.22
SHROOM3-201ENST00000296043 SPA17Q15506 151 aa13.71□□□□□ -0.22
SHROOM3-201ENST00000296043 OGFRQ9NZT2 677 aa13.71□□□□□ -0.22
SHROOM3-201ENST00000296043 XBP1P17861 261 aa13.71□□□□□ -0.22
SHROOM3-201ENST00000296043 MATR3P43243 847 aaKnown RBP eCLIP13.71□□□□□ -0.22
SHROOM3-201ENST00000296043 MRVI1Q9Y6F6 885 aa13.71□□□□□ -0.22
SHROOM3-201ENST00000296043 GSTTP1A0A1W2PQM5 241 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 FAM114A1Q8IWE2 563 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 GON4LQ3T8J9 2241 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 GCOM1H8Y6P7 765 aaPredicted RBP13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 MYZAPP0CAP1 466 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 ABCC8Q09428 1581 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 AMOTL1Q8IY63 956 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 SMG6Q86US8 1419 aaKnown RBP13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 DNAJC21Q5F1R6 531 aaKnown RBP13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 NOLC1Q14978 699 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 CCDC114Q96M63 670 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 SAMD1Q6SPF0 538 aaPredicted RBP13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 CCDC7Q96M83 1385 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 EBAG9O00559 213 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 HSF2BPO75031 334 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 A0A1B0GUA9 196 aa13.7□□□□□ -0.22
SHROOM3-201ENST00000296043 FAM160A1Q05DH4 1040 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 KIF20AO95235 890 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 ZHX3Q9H4I2 956 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 CCDC18Q5T9S5 1454 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 KIF5BP33176 963 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 MAP2K2P36507 400 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 ANKS4BQ8N8V4 417 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 C6orf163Q5TEZ5 329 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 RB1CC1Q8TDY2 1594 aa13.69□□□□□ -0.22
SHROOM3-201ENST00000296043 TMX4Q9H1E5 349 aaPredicted RBP13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 HSP90AB4PQ58FF6 505 aa13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 KLHL10Q6JEL2 608 aa13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 SPECC1Q5M775 1068 aa13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 TBC1D2Q9BYX2 928 aa13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 ZNF397Q8NF99 534 aaPredicted RBP13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 AMPHP49418 695 aa13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 FERMT3Q86UX7 667 aa13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 RRAGDQ9NQL2 400 aaPredicted RBP13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 PHACTR2O75167 634 aa13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 CCDC12Q8WUD4 166 aaPredicted RBP13.68□□□□□ -0.22
SHROOM3-201ENST00000296043 RUNDC1Q96C34 613 aa13.67□□□□□ -0.22
SHROOM3-201ENST00000296043 PDE1CQ14123 709 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-201ENST00000296043 NUTM2DQ5VT03 806 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-201ENST00000296043 NEMFO60524 1076 aa13.67□□□□□ -0.22
SHROOM3-201ENST00000296043 GNG11P61952 73 aa13.67□□□□□ -0.22
SHROOM3-201ENST00000296043 BUB1BO60566 1050 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-201ENST00000296043 VPS37DQ86XT2 251 aa13.67□□□□□ -0.22
SHROOM3-201ENST00000296043 NUP88Q99567 741 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-201ENST00000296043 FAM114A2Q9NRY5 505 aa13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 FAM184BQ9ULE4 1060 aa13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 PDRG1Q9NUG6 133 aa13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 NEUROD6Q96NK8 337 aa13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 CTDP1Q9Y5B0 961 aaPredicted RBP13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 GTF2E1P29083 439 aaPredicted RBP13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 PPM1EQ8WY54 764 aa13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 KIF3CO14782 793 aa13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 CTNNBL1Q8WYA6 563 aaPredicted RBP13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 STX1AQ16623 288 aa13.66□□□□□ -0.22
SHROOM3-201ENST00000296043 ZEB2O60315 1214 aa13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 PAF1Q8N7H5 531 aa13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 DZIP1Q86YF9 867 aaKnown RBP13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 CPLX3Q8WVH0 158 aa13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 NSRP1Q9H0G5 558 aaKnown RBP13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 BRD4O60885 1362 aaPredicted RBP13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 UBTFL1P0CB47 393 aaPredicted RBP13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 GDPD2Q9HCC8 539 aa13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 ZBTB12Q9Y330 459 aaPredicted RBP13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 BCAR3O75815 825 aa13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 GSDMDP57764 484 aa13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 RNF168Q8IYW5 571 aaPredicted RBP13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 NBPF11Q86T75 865 aa13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 JAKMIP1Q96N16 626 aaKnown RBP13.65□□□□□ -0.22
SHROOM3-201ENST00000296043 CASTP20810 708 aaKnown RBP13.65□□□□□ -0.23
SHROOM3-201ENST00000296043 NOB1Q9ULX3 412 aaKnown RBP13.65□□□□□ -0.23
SHROOM3-201ENST00000296043 MXRA7P84157 204 aa13.64□□□□□ -0.23
SHROOM3-201ENST00000296043 SEPT14Q6ZU15 432 aa13.64□□□□□ -0.23
SHROOM3-201ENST00000296043 ZFYP08048 801 aaPredicted RBP13.64□□□□□ -0.23
SHROOM3-201ENST00000296043 APBB1IPQ7Z5R6 666 aaPredicted RBP13.64□□□□□ -0.23
SHROOM3-201ENST00000296043 KIF3BO15066 747 aa13.64□□□□□ -0.23
SHROOM3-201ENST00000296043 GCKP35557 465 aa13.64□□□□□ -0.23
SHROOM3-201ENST00000296043 ADAMTS8Q9UP79 889 aa13.64□□□□□ -0.23
SHROOM3-201ENST00000296043 SART3Q15020 963 aaKnown RBP13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 TMEM132AQ24JP5 1023 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms