RNA–Protein interactions for RNA: ENST00000009180.8

CD9-201, Transcript of CD9 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD9, Length 1,169 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-201ENST00000009180 BARGINQ6ZT62 677 aa13.5□□□□□ -0.25
CD9-201ENST00000009180 SEPT12Q8IYM1 358 aa13.5□□□□□ -0.25
CD9-201ENST00000009180 THRAP3Q9Y2W1 955 aaKnown RBP13.5□□□□□ -0.25
CD9-201ENST00000009180 IL2RBP14784 551 aa13.49□□□□□ -0.25
CD9-201ENST00000009180 PARP4Q9UKK3 1724 aaKnown RBP13.49□□□□□ -0.25
CD9-201ENST00000009180 OVOS2A0A0G2JMS6 1433 aa13.48□□□□□ -0.25
CD9-201ENST00000009180 U2AF1L5P0DN76 240 aaPredicted RBP13.48□□□□□ -0.25
CD9-201ENST00000009180 U2AF1Q01081 240 aaKnown RBP eCLIP13.48□□□□□ -0.25
CD9-201ENST00000009180 MIER1Q8N108 512 aa13.48□□□□□ -0.25
CD9-201ENST00000009180 MRS2Q9HD23 443 aa13.48□□□□□ -0.25
CD9-201ENST00000009180 KDRP35968 1356 aa13.47□□□□□ -0.25
CD9-201ENST00000009180 ONECUT3O60422 494 aaPredicted RBP13.47□□□□□ -0.25
CD9-201ENST00000009180 RAPGEF4Q8WZA2 1011 aa13.47□□□□□ -0.25
CD9-201ENST00000009180 NUDCQ9Y266 331 aa13.47□□□□□ -0.25
CD9-201ENST00000009180 TNS2Q63HR2 1409 aa13.47□□□□□ -0.25
CD9-201ENST00000009180 BRWD3Q6RI45 1802 aa13.46□□□□□ -0.25
CD9-201ENST00000009180 TATP17735 454 aaPredicted RBP13.46□□□□□ -0.25
CD9-201ENST00000009180 SHANK3Q9BYB0 1731 aa13.45□□□□□ -0.26
CD9-201ENST00000009180 DDB1Q16531 1140 aa13.45□□□□□ -0.26
CD9-201ENST00000009180 FAM182BQ5T319 152 aa13.45□□□□□ -0.26
CD9-201ENST00000009180 RSPH6AQ9H0K4 717 aa13.45□□□□□ -0.26
CD9-201ENST00000009180 PKD1L3Q7Z443 1732 aa13.44□□□□□ -0.26
CD9-201ENST00000009180 PRKAR2BP31323 418 aa13.44□□□□□ -0.26
CD9-201ENST00000009180 WDR43Q15061 677 aaKnown RBP eCLIP13.44□□□□□ -0.26
CD9-201ENST00000009180 CDCA7Q9BWT1 371 aaPredicted RBP13.44□□□□□ -0.26
CD9-201ENST00000009180 ZCRB1Q8TBF4 217 aaKnown RBP13.43□□□□□ -0.26
CD9-201ENST00000009180 EXOC5O00471 708 aa13.42□□□□□ -0.26
CD9-201ENST00000009180 CCDC146Q8IYE0 955 aa13.42□□□□□ -0.26
CD9-201ENST00000009180 MARCH10Q8NA82 808 aaPredicted RBP13.42□□□□□ -0.26
CD9-201ENST00000009180 DDX54Q8TDD1 881 aaKnown RBP13.42□□□□□ -0.26
CD9-201ENST00000009180 ADAMTS8Q9UP79 889 aa13.42□□□□□ -0.26
CD9-201ENST00000009180 PDE3BQ13370 1112 aa13.41□□□□□ -0.26
CD9-201ENST00000009180 KRT27Q7Z3Y8 459 aa13.41□□□□□ -0.26
CD9-201ENST00000009180 PNISRQ8TF01 805 aaKnown RBP13.41□□□□□ -0.26
CD9-201ENST00000009180 PHACTR3Q96KR7 559 aa13.41□□□□□ -0.26
CD9-201ENST00000009180 EP400Q96L91 3159 aa13.4□□□□□ -0.26
CD9-201ENST00000009180 CYP27B1O15528 508 aa13.4□□□□□ -0.26
CD9-201ENST00000009180 FCHSD2O94868 740 aa13.4□□□□□ -0.26
CD9-201ENST00000009180 ZNF530Q6P9A1 599 aaPredicted RBP13.4□□□□□ -0.26
CD9-201ENST00000009180 PCDH11XQ9BZA7 1347 aa13.39□□□□□ -0.27
CD9-201ENST00000009180 PCDH11YQ9BZA8 1340 aa13.39□□□□□ -0.27
CD9-201ENST00000009180 CCER2I3L3R5 266 aa13.39□□□□□ -0.27
CD9-201ENST00000009180 MTHFSDQ2M296 383 aaKnown RBP13.39□□□□□ -0.27
CD9-201ENST00000009180 PLEKHO1Q53GL0 409 aaPredicted RBP13.39□□□□□ -0.27
CD9-201ENST00000009180 FAM9BQ8IZU0 186 aa13.39□□□□□ -0.27
CD9-201ENST00000009180 SPG7Q9UQ90 795 aa13.39□□□□□ -0.27
CD9-201ENST00000009180 SENP3-EIF4A1A0A087X0R7 540 aa13.38□□□□□ -0.27
CD9-201ENST00000009180 PLEKHF1Q96S99 279 aa13.38□□□□□ -0.27
CD9-201ENST00000009180 PLEKHG2Q9H7P9 1386 aa13.37□□□□□ -0.27
CD9-201ENST00000009180 PHKG2P15735 406 aa13.37□□□□□ -0.27
CD9-201ENST00000009180 AMOTQ4VCS5 1084 aa13.37□□□□□ -0.27
CD9-201ENST00000009180 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.37□□□□□ -0.27
CD9-201ENST00000009180 TOGARAM1Q9Y4F4 1720 aa13.36□□□□□ -0.27
CD9-201ENST00000009180 MAPK8IP3Q9UPT6 1336 aa13.36□□□□□ -0.27
CD9-201ENST00000009180 DOT1LQ8TEK3 1739 aa13.36□□□□□ -0.27
CD9-201ENST00000009180 C1orf141Q5JVX7 400 aa13.35□□□□□ -0.27
CD9-201ENST00000009180 IFNL2Q8IZJ0 200 aa13.35□□□□□ -0.27
CD9-201ENST00000009180 ACSBG1Q96GR2 724 aa13.35□□□□□ -0.27
CD9-201ENST00000009180 RRP7AQ9Y3A4 280 aaKnown RBP13.35□□□□□ -0.27
CD9-201ENST00000009180 KDM6AO15550 1401 aaPredicted RBP13.35□□□□□ -0.27
CD9-201ENST00000009180 MPRIPQ6WCQ1 1025 aa13.34□□□□□ -0.27
CD9-201ENST00000009180 PTF1AQ7RTS3 328 aa13.34□□□□□ -0.27
CD9-201ENST00000009180 GAS2L2Q8NHY3 880 aa13.34□□□□□ -0.27
CD9-201ENST00000009180 RUNDC1Q96C34 613 aa13.34□□□□□ -0.27
CD9-201ENST00000009180 MAP3K5Q99683 1374 aa13.33□□□□□ -0.27
CD9-201ENST00000009180 AKAP4Q5JQC9 854 aa13.33□□□□□ -0.28
CD9-201ENST00000009180 NHSQ6T4R5 1651 aa13.32□□□□□ -0.28
CD9-201ENST00000009180 KCNQ2O43526 872 aa13.32□□□□□ -0.28
CD9-201ENST00000009180 TRIM37O94972 964 aa13.32□□□□□ -0.28
CD9-201ENST00000009180 NEFMP07197 916 aa13.32□□□□□ -0.28
CD9-201ENST00000009180 NKX1-1Q15270 411 aaPredicted RBP13.32□□□□□ -0.28
CD9-201ENST00000009180 NEUROD2Q15784 382 aa13.32□□□□□ -0.28
CD9-201ENST00000009180 NFE2L2Q16236 605 aa13.32□□□□□ -0.28
CD9-201ENST00000009180 FAM196AQ6ZSG2 479 aa13.32□□□□□ -0.28
CD9-201ENST00000009180 PNNQ9H307 717 aaKnown RBP13.32□□□□□ -0.28
CD9-201ENST00000009180 LGR6Q9HBX8 967 aa13.32□□□□□ -0.28
CD9-201ENST00000009180 BCL9O00512 1426 aa13.31□□□□□ -0.28
CD9-201ENST00000009180 GNAT3A8MTJ3 354 aa13.31□□□□□ -0.28
CD9-201ENST00000009180 APAF1O14727 1248 aa13.31□□□□□ -0.28
CD9-201ENST00000009180 DCTN1Q14203 1278 aa13.31□□□□□ -0.28
CD9-201ENST00000009180 SYTL4Q96C24 671 aaPredicted RBP13.31□□□□□ -0.28
CD9-201ENST00000009180 SBF2Q86WG5 1849 aa13.3□□□□□ -0.28
CD9-201ENST00000009180 RNMTO43148 476 aaKnown RBP13.3□□□□□ -0.28
CD9-201ENST00000009180 TMPOP42166 694 aaKnown RBP13.3□□□□□ -0.28
CD9-201ENST00000009180 PRIM1P49642 420 aaKnown RBP13.3□□□□□ -0.28
CD9-201ENST00000009180 CACNB1Q02641 598 aaPredicted RBP13.3□□□□□ -0.28
CD9-201ENST00000009180 MCM10Q7L590 875 aa13.3□□□□□ -0.28
CD9-201ENST00000009180 ADAMTS7Q9UKP4 1686 aa13.3□□□□□ -0.28
CD9-201ENST00000009180 TNS1Q9HBL0 1735 aaKnown RBP13.3□□□□□ -0.28
CD9-201ENST00000009180 DLG5Q8TDM6 1919 aa13.29□□□□□ -0.28
CD9-201ENST00000009180 HSP90AB1P08238 724 aaKnown RBP13.29□□□□□ -0.28
CD9-201ENST00000009180 RIPK4P57078 832 aa13.29□□□□□ -0.28
CD9-201ENST00000009180 IL17REQ8NFR9 667 aa13.29□□□□□ -0.28
CD9-201ENST00000009180 DCAF5Q96JK2 942 aa13.29□□□□□ -0.28
CD9-201ENST00000009180 THUMPD2Q9BTF0 503 aaKnown RBP13.29□□□□□ -0.28
CD9-201ENST00000009180 SCN11AQ9UI33 1791 aa13.28□□□□□ -0.28
CD9-201ENST00000009180 MRC1P22897 1456 aa13.28□□□□□ -0.28
CD9-201ENST00000009180 TRIM35Q9UPQ4 493 aa13.27□□□□□ -0.29
CD9-201ENST00000009180 SALL2Q9Y467 1007 aaPredicted RBP13.27□□□□□ -0.29
CD9-201ENST00000009180 BTAF1O14981 1849 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms