RNA–Protein interactions for RNA: ENSMUST00000187758.6

Usp40-204, Transcript of Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Usp40, Length 3,977 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40-204ENSMUST00000187758 Col15a1O35206 1367 aa9.6□□□□□ -0.87
Usp40-204ENSMUST00000187758 Qtrt2B8ZXI1 415 aa9.6□□□□□ -0.87
Usp40-204ENSMUST00000187758 Hspa1lP16627 641 aa9.6□□□□□ -0.87
Usp40-204ENSMUST00000187758 PrkcshO08795 521 aa9.59□□□□□ -0.87
Usp40-204ENSMUST00000187758 RgmbQ7TQ33 436 aa9.59□□□□□ -0.87
Usp40-204ENSMUST00000187758 Ybx3Q9JKB3 361 aaKnown RBP9.59□□□□□ -0.87
Usp40-204ENSMUST00000187758 Tmco5bQ80X59 307 aa9.59□□□□□ -0.87
Usp40-204ENSMUST00000187758 Cc2d1aQ8K1A6 943 aa9.59□□□□□ -0.87
Usp40-204ENSMUST00000187758 Pank1Q8K4K6 548 aa9.59□□□□□ -0.87
Usp40-204ENSMUST00000187758 Trpm3Q5F4S9 1721 aa9.59□□□□□ -0.88
Usp40-204ENSMUST00000187758 Ggt6Q6PDE7 497 aa9.58□□□□□ -0.88
Usp40-204ENSMUST00000187758 4930572O03RikQ8C5Y0 211 aa9.58□□□□□ -0.88
Usp40-204ENSMUST00000187758 Prim1P20664 417 aa9.58□□□□□ -0.88
Usp40-204ENSMUST00000187758 ThemisQ8BGW0 636 aa9.58□□□□□ -0.88
Usp40-204ENSMUST00000187758 Arfgef2A2A5R2 1792 aa9.58□□□□□ -0.88
Usp40-204ENSMUST00000187758 Vamp4O70480 141 aa9.58□□□□□ -0.88
Usp40-204ENSMUST00000187758 Q3TQI7 289 aaKnown RBP9.58□□□□□ -0.88
Usp40-204ENSMUST00000187758 Fam50bQ9WTJ8 334 aa9.58□□□□□ -0.88
Usp40-204ENSMUST00000187758 Wdr43Q6ZQL4 677 aaKnown RBP9.57□□□□□ -0.88
Usp40-204ENSMUST00000187758 Chmp7Q8R1T1 451 aa9.57□□□□□ -0.88
Usp40-204ENSMUST00000187758 Irx6Q9ER75 438 aa9.57□□□□□ -0.88
Usp40-204ENSMUST00000187758 Arhgef1Q61210 920 aaKnown RBP9.57□□□□□ -0.88
Usp40-204ENSMUST00000187758 Slc5a4bQ91ZP4 660 aa9.57□□□□□ -0.88
Usp40-204ENSMUST00000187758 Prkrip1Q9CWV6 186 aaKnown RBP9.57□□□□□ -0.88
Usp40-204ENSMUST00000187758 Ahnak2E9PYB0 1738 aaKnown RBP9.57□□□□□ -0.88
Usp40-204ENSMUST00000187758 Kcnh8P59111 1102 aa9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 Plekhm2Q80TQ5 1018 aa9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 Slx1bQ8BX32 270 aa9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 Lrrc59Q922Q8 307 aaKnown RBP9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 Slit1Q80TR4 1531 aa9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 Zeb2Q9R0G7 1215 aa9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 Nectin2P32507 530 aa9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 Znf330Q922H9 316 aa9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 KarsQ99MN1 595 aaKnown RBP9.56□□□□□ -0.88
Usp40-204ENSMUST00000187758 Abcc12Q80WJ6 1366 aa9.55□□□□□ -0.88
Usp40-204ENSMUST00000187758 Tnnt1O88346 262 aa9.55□□□□□ -0.88
Usp40-204ENSMUST00000187758 Ppp4r2Q0VGB7 417 aa9.55□□□□□ -0.88
Usp40-204ENSMUST00000187758 Speer4bQ9D9F7 267 aa9.55□□□□□ -0.88
Usp40-204ENSMUST00000187758 Aox2Q5SGK3 1345 aa9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Nup153E9Q3G8 1462 aaKnown RBP9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Znf526Q8BI66 675 aa9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Eif3bQ8JZQ9 803 aaKnown RBP9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Zfp142G5E869 1843 aa9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Marf1Q8BJ34 1730 aaKnown RBP9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Nsd3Q6P2L6 1439 aa9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Btbd11Q6GQW0 1109 aa9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Cavin2Q63918 418 aaKnown RBP9.54□□□□□ -0.88
Usp40-204ENSMUST00000187758 Pard3Q99NH2 1333 aa9.53□□□□□ -0.88
Usp40-204ENSMUST00000187758 Gm21680A0A0G2JGR8 267 aa9.53□□□□□ -0.88
Usp40-204ENSMUST00000187758 Pdzd9Q9D9M4 266 aa9.53□□□□□ -0.88
Usp40-204ENSMUST00000187758 Phkg2Q9DB30 406 aa9.53□□□□□ -0.88
Usp40-204ENSMUST00000187758 Tspyl2Q7TQI8 677 aa9.53□□□□□ -0.88
Usp40-204ENSMUST00000187758 Bcl2l12Q9D3J3 255 aa9.53□□□□□ -0.88
Usp40-204ENSMUST00000187758 Foxp4Q9DBY0 795 aaKnown RBP9.53□□□□□ -0.88
Usp40-204ENSMUST00000187758 Igsf1Q7TQA1 1317 aa9.53□□□□□ -0.88
Usp40-204ENSMUST00000187758 Gm21663A0A0G2JE01 267 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Gm7361D3Z6R1 267 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 5031410I06RikE9Q4E0 267 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Gm1979E9QAN3 267 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 AampJ3QN89 436 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Gm5862K7N5V5 267 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Gm10220K7N660 267 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Q3UPC7 1272 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Aldh1l1Q8R0Y6 902 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Ccdc155Q80VJ8 648 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Ric3Q8BPM6 367 aa9.52□□□□□ -0.89
Usp40-204ENSMUST00000187758 Chpf2Q3UU43 768 aa9.51□□□□□ -0.89
Usp40-204ENSMUST00000187758 Sv2bQ8BG39 683 aa9.51□□□□□ -0.89
Usp40-204ENSMUST00000187758 Maco1Q7TQE6 664 aaKnown RBP9.51□□□□□ -0.89
Usp40-204ENSMUST00000187758 Nutm1Q8BHP2 1126 aa9.51□□□□□ -0.89
Usp40-204ENSMUST00000187758 FocadA2AKG8 1798 aa9.5□□□□□ -0.89
Usp40-204ENSMUST00000187758 Slc5a1Q8C3K6 665 aa9.5□□□□□ -0.89
Usp40-204ENSMUST00000187758 Chmp4bQ9D8B3 224 aaKnown RBP9.5□□□□□ -0.89
Usp40-204ENSMUST00000187758 Asic4Q7TNS7 539 aa9.5□□□□□ -0.89
Usp40-204ENSMUST00000187758 Slc4a3P16283 1227 aa9.49□□□□□ -0.89
Usp40-204ENSMUST00000187758 Chl1P70232 1209 aa9.49□□□□□ -0.89
Usp40-204ENSMUST00000187758 Elp1Q7TT37 1333 aaKnown RBP9.49□□□□□ -0.89
Usp40-204ENSMUST00000187758 Atf5O70191 283 aa9.49□□□□□ -0.89
Usp40-204ENSMUST00000187758 Eif4a1P60843 406 aaKnown RBP9.49□□□□□ -0.89
Usp40-204ENSMUST00000187758 Tns2Q8CGB6 1400 aa9.49□□□□□ -0.89
Usp40-204ENSMUST00000187758 Ppp1r3fQ9JIG4 799 aa9.49□□□□□ -0.89
Usp40-204ENSMUST00000187758 Fkbp4P30416 458 aa9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 Larp1Q6ZQ58 1072 aaKnown RBP9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 Ssfa2Q922B9 1252 aa9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 Sf3b2Q3UJB0 878 aaKnown RBP9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 PsapQ61207 557 aaKnown RBP9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 Supt16hQ920B9 1047 aa9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 MvpQ9EQK5 861 aa9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 Col1a2Q01149 1372 aa9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 MarsQ68FL6 902 aaKnown RBP9.48□□□□□ -0.89
Usp40-204ENSMUST00000187758 Znf521Q6KAS7 1311 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Aplp1Q03157 653 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Cyp2d12Q8BVD2 504 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Emilin2Q8K482 1074 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Fgd1P52734 960 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Bcl2l13P59017 434 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Fam83gQ5SWY7 812 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Adgrb1Q3UHD1 1582 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Duxf3A0A0N4SV92 674 aa9.47□□□□□ -0.89
Usp40-204ENSMUST00000187758 Nkx2-3P97334 362 aa9.47□□□□□ -0.89
Retrieved 100 of 22,080 RNA–protein pairs in 89.9 ms