RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CLCNKAP51800 687 aa16■□□□□ 0.15
LSM4-206ENST00000600289 ZNF140P52738 457 aaPredicted RBP16■□□□□ 0.15
LSM4-206ENST00000600289 CAMK2BQ13554 666 aa16■□□□□ 0.15
LSM4-206ENST00000600289 SNX1Q13596 522 aa16■□□□□ 0.15
LSM4-206ENST00000600289 HLTFQ14527 1009 aaKnown RBP eCLIP16■□□□□ 0.15
LSM4-206ENST00000600289 C14orf28Q4W4Y0 310 aa16■□□□□ 0.15
LSM4-206ENST00000600289 CCDC157Q569K6 752 aa16■□□□□ 0.15
LSM4-206ENST00000600289 CERCAMQ5T4B2 595 aa16■□□□□ 0.15
LSM4-206ENST00000600289 ADGRG6Q86SQ4 1221 aa16■□□□□ 0.15
LSM4-206ENST00000600289 DCBLD1Q8N8Z6 715 aa16■□□□□ 0.15
LSM4-206ENST00000600289 FAM46DQ8NEK8 389 aa16■□□□□ 0.15
LSM4-206ENST00000600289 DDHD1Q8NEL9 900 aa16■□□□□ 0.15
LSM4-206ENST00000600289 NAP1L3Q99457 506 aaPredicted RBP16■□□□□ 0.15
LSM4-206ENST00000600289 TAAR2Q9P1P5 351 aa16■□□□□ 0.15
LSM4-206ENST00000600289 ATXN10Q9UBB4 475 aa16■□□□□ 0.15
LSM4-206ENST00000600289 APPL1Q9UKG1 709 aa16■□□□□ 0.15
LSM4-206ENST00000600289 TMPRSS11EQ9UL52 423 aa16■□□□□ 0.15
LSM4-206ENST00000600289 ARL5AQ9Y689 179 aa16■□□□□ 0.15
LSM4-206ENST00000600289 AGAP14A8MT82 685 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 GRID2O43424 1007 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 LDB2O43679 373 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 IFNB1P01574 187 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 GLB1P16278 677 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 PSMA3P25788 255 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 AK4P27144 223 aaPredicted RBP15.99■□□□□ 0.15
LSM4-206ENST00000600289 HADHAP40939 763 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 ABCG1P45844 678 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 CYP4F3Q08477 520 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 CCDC173Q0VFZ6 552 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 SPARCL1Q14515 664 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 NR1D2Q14995 579 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 PERM1Q5SV97 790 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 MARK2Q7KZI7 788 aaKnown RBP15.99■□□□□ 0.15
LSM4-206ENST00000600289 PRELID2Q8N945 189 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 CCDC89Q8N998 374 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 LSM14AQ8ND56 463 aaKnown RBP15.99■□□□□ 0.15
LSM4-206ENST00000600289 OR4K2Q8NGD2 314 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 DPEP2Q9H4A9 486 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 ETNK1Q9HBU6 452 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 EIF2B3Q9NR50 452 aaKnown RBP15.99■□□□□ 0.15
LSM4-206ENST00000600289 SPATS2LQ9NUQ6 558 aaKnown RBP15.99■□□□□ 0.15
LSM4-206ENST00000600289 CLCA2Q9UQC9 943 aa15.99■□□□□ 0.15
LSM4-206ENST00000600289 PCYT1BQ9Y5K3 369 aaPredicted RBP15.99■□□□□ 0.15
LSM4-206ENST00000600289 CPED1A4D0V7 1026 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 H7C0S8 307 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 NUDT21O43809 227 aaKnown RBP15.98■□□□□ 0.15
LSM4-206ENST00000600289 TCEA3O75764 348 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 ZNF8P17098 575 aaPredicted RBP15.98■□□□□ 0.15
LSM4-206ENST00000600289 CDH17Q12864 832 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 TCEA2Q15560 299 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 CHRNA6Q15825 494 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 CYP1B1Q16678 543 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 LDLRAP1Q5SW96 308 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 SLC30A9Q6PML9 568 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 FAM151BQ6UXP7 276 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 ZNF438Q7Z4V0 828 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 MARCH9Q86YJ5 346 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 GLIS1Q8NBF1 620 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 MAPK15Q8TD08 544 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 ACTRT1Q8TDG2 376 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 ZDHHC1Q8WTX9 485 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 OSBPL9Q96SU4 736 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 CCDC3Q9BQI4 270 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 TIMM29Q9BSF4 260 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 ZCCHC2Q9C0B9 1178 aaKnown RBP15.98■□□□□ 0.15
LSM4-206ENST00000600289 OR2AG1Q9H205 316 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 PRORYQ9H606 182 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 RAB6BQ9NRW1 208 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 TRMT1Q9NXH9 659 aaKnown RBP15.98■□□□□ 0.15
LSM4-206ENST00000600289 SIRPGQ9P1W8 387 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 GULP1Q9UBP9 304 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 SNX12Q9UMY4 172 aa15.98■□□□□ 0.15
LSM4-206ENST00000600289 PRR19A6NJB7 356 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 USP27XA6NNY8 438 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 B4DGG1 531 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 PGRMC1O00264 195 aaKnown RBP15.97■□□□□ 0.15
LSM4-206ENST00000600289 NTN3O00634 580 aaPredicted RBP15.97■□□□□ 0.15
LSM4-206ENST00000600289 BUD23O43709 281 aaKnown RBP15.97■□□□□ 0.15
LSM4-206ENST00000600289 PRAMEF1O95521 474 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 MT-CO3P00414 261 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 ETS1P14921 441 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 RPL22P35268 128 aaKnown RBP15.97■□□□□ 0.15
LSM4-206ENST00000600289 ACTR1BP42025 376 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 ACTR1AP61163 376 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 XIAPP98170 497 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 KHDC1Q4VXA5 237 aaKnown RBP15.97■□□□□ 0.15
LSM4-206ENST00000600289 LRRTM4Q86VH4 590 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 NAGSQ8N159 534 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 CCDC74AQ96AQ1 378 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 GRAMD1AQ96CP6 724 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 DEPDC7Q96QD5 511 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 RANBP9Q96S59 729 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 SUDS3Q9H7L9 328 aaPredicted RBP15.97■□□□□ 0.15
LSM4-206ENST00000600289 NLE1Q9NVX2 485 aaPredicted RBP15.97■□□□□ 0.15
LSM4-206ENST00000600289 ZNHIT2Q9UHR6 403 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 RIMKLBQ9ULI2 386 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 PLEKHM1Q9Y4G2 1056 aa15.97■□□□□ 0.15
LSM4-206ENST00000600289 A6NCN8 305 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 MROH6A6NGR9 719 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 KMOO15229 486 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms